Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,319,474 |
T→C |
V471A (GTA→GCA) |
atoS → |
AtoS |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,319,474 | 0 | T | C | 100.0%
| 434.2
/ NA
| 136 | V471A (GTA→GCA) | atoS | AtoS |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (58/78); total (58/78) |
Only 100 of 150 total aligned reads displayed.
AGCAATTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGTACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTGCT > NC_000913/2319387‑2319561
|
aGCAATTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACaaa > 2:2617151/1‑93 (MQ=255)
aGCAATTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACaaa > 2:273262/1‑93 (MQ=255)
gCAATTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAAc < 1:3540273/93‑1 (MQ=255)
aaTTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAAccg > 1:1500739/1‑93 (MQ=255)
aaTTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAAccg < 2:3008762/93‑1 (MQ=255)
aaTTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAAcag > 1:287607/1‑91 (MQ=255)
aaTTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGGACTGGCACAAAccg > 2:22517/1‑93 (MQ=255)
ttGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAAccgcc < 1:582549/93‑1 (MQ=255)
tcTCGATTCTTCACGCCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCgg < 2:2285664/92‑1 (MQ=255)
gCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCgg > 2:2268219/1‑93 (MQ=255)
gCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCgg > 2:3452742/1‑93 (MQ=255)
tCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCg > 2:2077999/1‑93 (MQ=255)
gAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTa > 1:1275290/1‑93 (MQ=255)
aTTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACa > 2:2806138/1‑93 (MQ=255)
aTTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACa > 2:1487799/1‑93 (MQ=255)
tttCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAg < 1:4468841/93‑1 (MQ=255)
tttCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAg < 2:4316020/93‑1 (MQ=255)
tttCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAg < 1:3471136/93‑1 (MQ=255)
ttCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAgc < 2:2785679/93‑1 (MQ=255)
cACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAgcgc < 2:1038274/93‑1 (MQ=255)
cGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCgg < 2:3888818/93‑1 (MQ=255)
gTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCggg < 2:264904/93‑1 (MQ=255)
gTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCggg < 1:2774007/93‑1 (MQ=255)
gTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCggg < 1:4273619/93‑1 (MQ=255)
gTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCggg < 1:4351924/93‑1 (MQ=255)
tCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGt > 1:570873/1‑93 (MQ=255)
tCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGt < 2:900207/93‑1 (MQ=255)
tCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGt < 1:3506584/93‑1 (MQ=255)
cGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGAc < 1:3897016/93‑1 (MQ=255)
cGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGAc > 2:207075/1‑93 (MQ=255)
gCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACt < 1:660534/93‑1 (MQ=255)
gCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACt > 2:1929176/1‑93 (MQ=255)
ccACAGTCAATGACAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACtt < 2:3723887/93‑1 (MQ=255)
acaGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCa > 2:2444156/1‑93 (MQ=255)
acaGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCa > 2:3469411/1‑93 (MQ=255)
acaGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCa > 1:4279653/1‑93 (MQ=255)
acaGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCa < 1:4323990/93‑1 (MQ=255)
acaGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCa < 1:4649409/93‑1 (MQ=255)
acaGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCa < 2:4324689/93‑1 (MQ=255)
caGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCAt > 1:3212156/1‑93 (MQ=255)
aGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATa < 1:3763776/93‑1 (MQ=255)
gTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATaa < 1:3980197/93‑1 (MQ=255)
gTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATaa < 2:1281128/93‑1 (MQ=255)
gTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATaa < 2:683602/93‑1 (MQ=255)
tGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGaa < 2:171306/93‑1 (MQ=255)
tGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGaa < 1:2191820/93‑1 (MQ=255)
ggCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAAc < 1:917240/93‑1 (MQ=255)
acaaGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGa > 2:1790317/1‑93 (MQ=255)
caaGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGAt < 2:2998460/93‑1 (MQ=255)
caaGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGAt > 2:1688428/1‑93 (MQ=255)
aGTCAGCCTCAATGCATTGGTTGAAGAATCTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATaa < 2:3957151/93‑1 (MQ=255)
gTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAAt < 1:30037/93‑1 (MQ=255)
gTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAAt < 1:4211508/93‑1 (MQ=255)
tCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATg > 2:2297998/1‑93 (MQ=255)
cAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGa < 2:3511903/93‑1 (MQ=255)
aGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGaa > 1:2635996/1‑93 (MQ=255)
aGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGaa < 2:3313216/93‑1 (MQ=255)
aGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGaa < 1:1131053/93‑1 (MQ=255)
ccTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAAtt < 1:1002106/93‑1 (MQ=255)
cTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTa > 2:483420/1‑93 (MQ=255)
cTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTa > 2:3376873/1‑93 (MQ=255)
tCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTaa > 1:2375560/1‑93 (MQ=255)
tCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTaa < 1:1322846/93‑1 (MQ=255)
tCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTaa < 1:3813948/93‑1 (MQ=255)
aaTGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGc > 1:2895425/1‑93 (MQ=255)
aTGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGcc > 1:2827907/1‑93 (MQ=255)
tGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGccc > 2:2882316/1‑93 (MQ=255)
tGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGccc > 1:3203091/1‑93 (MQ=255)
tGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGccc > 1:613926/1‑93 (MQ=255)
tGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGccc > 1:705326/1‑93 (MQ=255)
gCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCg > 1:3943341/1‑93 (MQ=255)
cATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGa < 2:4626217/93‑1 (MQ=255)
aTTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGAt < 1:4062857/93‑1 (MQ=255)
ttGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGAtt < 2:863500/93‑1 (MQ=255)
ggTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTaa < 2:2911648/93‑1 (MQ=255)
gTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAAc > 1:4481318/1‑93 (MQ=255)
gTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAAc < 2:3523207/93‑1 (MQ=255)
gTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAAc < 2:32963/93‑1 (MQ=255)
tGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGc < 1:3035658/93‑1 (MQ=255)
tGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGc > 1:4217099/1‑93 (MQ=255)
gaagaaACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGcc < 1:1612916/93‑1 (MQ=255)
gaagaaACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGcc < 1:3002312/93‑1 (MQ=255)
aagaaACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGGTAATGAATTAAGCCCGATTAACGCCg > 1:634644/1‑93 (MQ=255)
agaaACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGa < 2:2036813/93‑1 (MQ=255)
gaaACTCTGGTACTGGCACAAGCCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGAt < 2:2201889/93‑1 (MQ=255)
gaaACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGAt > 2:2813418/1‑93 (MQ=255)
aaaCTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATc > 2:1827531/1‑93 (MQ=255)
aCTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGt < 1:3884941/93‑1 (MQ=255)
aCTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGt < 2:4242134/93‑1 (MQ=255)
tctGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGa > 1:3552173/1‑93 (MQ=255)
ctggtactggcaCAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGaa > 1:4649542/1‑93 (MQ=255)
tggtactggcacAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAAc < 2:1606831/93‑1 (MQ=255)
ggtactggcacAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACt < 1:2730657/93‑1 (MQ=255)
gtactggcacAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTg > 1:2385663/1‑93 (MQ=255)
tactggcacAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTGc < 1:2065609/93‑1 (MQ=255)
tactggcacAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTGc > 1:999754/1‑93 (MQ=255)
tactggcacAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTGc < 2:599643/93‑1 (MQ=255)
tactggcacAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTGc > 1:4135335/1‑93 (MQ=255)
actggcacAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTGCt < 2:3317126/93‑1 (MQ=255)
actggcacAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTGCt > 1:309328/1‑93 (MQ=255)
|
AGCAATTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGTACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTGCT > NC_000913/2319387‑2319561
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTATTCAGCAATTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGTACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTGCTCAAACA > NC_000913/2319381‑2319567
|
TTATTCAGCAATTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGC > SRR4302535.1663906/1‑94 (MQ=60)
AGCAATTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAAC > SRR4302535.287748/1‑94 (MQ=60)
GCAATTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACC < SRR4302535.3564873/94‑1 (MQ=60)
GCAATTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACC < SRR4302535.485096/94‑1 (MQ=60)
CAATTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCG > SRR4302535.1511535/1‑94 (MQ=60)
CAATTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACAG > SRR4302535.289622/1‑94 (MQ=60)
ATTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCG > SRR4302535.3954015/1‑94 (MQ=60)
ATTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCC > SRR4302535.1222326/1‑94 (MQ=60)
TTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCG < SRR4302535.586634/94‑1 (MQ=60)
CTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCG > SRR4302535.3726371/1‑94 (MQ=60)
CGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTA > SRR4302535.1284396/1‑94 (MQ=60)
ATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGACGGCGTACAA > SRR4302535.2380691/1‑94 (MQ=60)
TTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGC < SRR4302535.4499505/94‑1 (MQ=60)
TTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGC < SRR4302535.3495258/94‑1 (MQ=60)
ACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGG < SRR4302535.3440620/94‑1 (MQ=60)
ACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGG > SRR4302535.277326/1‑94 (MQ=60)
CGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGG < SRR4302535.643061/94‑1 (MQ=60)
GTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGT < SRR4302535.4381703/94‑1 (MQ=60)
GTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGT > SRR4302535.574881/1‑94 (MQ=60)
GTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGT < SRR4302535.2793760/94‑1 (MQ=60)
GTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGT < SRR4302535.4302873/94‑1 (MQ=60)
GCCCACGCCACAGTCAAGGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTCCTGGCACAAACCGCCGGCGTACAAGCGCGGGT < SRR4302535.427961/94‑1 (MQ=60)
TCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTC < SRR4302535.3530953/94‑1 (MQ=60)
CGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACT < SRR4302535.3923721/94‑1 (MQ=60)
GCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTT < SRR4302535.665144/94‑1 (MQ=60)
CACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCA > SRR4302535.4308938/1‑94 (MQ=60)
ACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCAT < SRR4302535.4353567/94‑1 (MQ=60)
ACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCAT < SRR4302535.4680898/94‑1 (MQ=60)
ACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCAT > SRR4302535.3234401/1‑94 (MQ=60)
AGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAA > SRR4302535.4400803/1‑94 (MQ=60)
AGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAA < SRR4302535.3789777/94‑1 (MQ=60)
AGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAA > SRR4302535.3532301/1‑94 (MQ=60)
AGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAA < SRR4302535.188917/94‑1 (MQ=60)
GTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAG < SRR4302535.4007391/94‑1 (MQ=60)
TCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGC < SRR4302535.3044521/94‑1 (MQ=60)
CAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCG > SRR4302535.386703/1‑94 (MQ=60)
TGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAAC < SRR4302535.2207417/94‑1 (MQ=60)
GGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACT < SRR4302535.923747/94‑1 (MQ=60)
GCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTG < SRR4302535.84066/94‑1 (MQ=60)
AACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGA > SRR4302535.4321159/1‑94 (MQ=60)
GTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATG < SRR4302535.4240333/94‑1 (MQ=60)
GTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATG > SRR4302535.1508038/1‑94 (MQ=60)
GTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATG < SRR4302535.30269/94‑1 (MQ=60)
TCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGA < SRR4302535.3221631/94‑1 (MQ=60)
CAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAA > SRR4302535.4181164/1‑94 (MQ=60)
CAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAA > SRR4302535.2654883/1‑94 (MQ=60)
AGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAAT < SRR4302535.1139126/94‑1 (MQ=60)
GCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATT < SRR4302535.4059310/94‑1 (MQ=60)
GCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCATACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATT < SRR4302535.2537845/94‑1 (MQ=60)
CCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTA < SRR4302535.1009224/94‑1 (MQ=60)
CTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAA > SRR4302535.2392627/1‑94 (MQ=60)
CTCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAA > SRR4302535.4636058/1‑94 (MQ=60)
TCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAG < SRR4302535.3840265/94‑1 (MQ=60)
TCAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAG < SRR4302535.1332288/94‑1 (MQ=60)
CAATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGC > SRR4302535.2915904/1‑94 (MQ=60)
AATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCC > SRR4302535.2847975/1‑94 (MQ=60)
AATGCATTGGTTGAAGAAACTCTAGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCC < SRR4302535.594999/94‑1 (MQ=60)
ATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCC > SRR4302535.618194/1‑94 (MQ=60)
ATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCC > SRR4302535.3225270/1‑94 (MQ=60)
ATGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCC > SRR4302535.710279/1‑94 (MQ=60)
TGCATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCG > SRR4302535.3970262/1‑94 (MQ=60)
ATTGGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATT < SRR4302535.4090662/94‑1 (MQ=60)
GGTTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAAC > SRR4302535.4512077/1‑94 (MQ=60)
TTGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGC > SRR4302535.4245956/1‑94 (MQ=60)
TGAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCC < SRR4302535.3056913/94‑1 (MQ=60)
GAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGGTAATGAATTAAGCCCGATTAACGCCG > SRR4302535.639065/1‑94 (MQ=60)
GAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCG < SRR4302535.3023359/94‑1 (MQ=60)
GAAGAAACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCG < SRR4302535.1624543/94‑1 (MQ=60)
ACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTG < SRR4302535.3016953/94‑1 (MQ=60)
ACTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTG < SRR4302535.3911591/94‑1 (MQ=60)
CTCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGA > SRR4302535.3576824/1‑94 (MQ=60)
TCTGGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAA > SRR4302535.4681032/1‑94 (MQ=60)
GGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTG < SRR4302535.2750149/94‑1 (MQ=60)
GGTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTG > SRR4302535.2402806/1‑94 (MQ=60)
GTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTGC > SRR4302535.4163650/1‑94 (MQ=60)
GTACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTGC > SRR4302535.1006862/1‑94 (MQ=60)
TACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTGCT < SRR4302535.2080499/94‑1 (MQ=60)
TACTGGCACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTGCT > SRR4302535.311474/1‑94 (MQ=60)
CACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTGCTCAAACA > SRR4302535.3105870/1‑94 (MQ=60)
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TTATTCAGCAATTGCTCGAATTTTCACGTCCACGCCACAGTCAATGGCAACAAGTCAGCCTCAATGCATTGGTTGAAGAAACTCTGGTACTGGTACAAACCGCCGGCGTACAAGCGCGGGTCGACTTCATAAGCGAACTGGATAATGAATTAAGCCCGATTAACGCCGATCGTGAACTGCTCAAACA > NC_000913/2319381‑2319567
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
