Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,954,264 |
A→T |
D881E (GAT→GAA) |
ptr ← |
protease III |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,954,264 | 0 | A | T | 99.5%
| 674.4
/ NA
| 189 | D881E (GAT→GAA) | ptr | protease III |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base T (83/105); total (84/105) |
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 190 total aligned reads displayed.
CTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGATCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGC > NC_000913/2954174‑2954353
|
tGATGTATGAAATCAGCAAGTTTTTGCTGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCg < 2:2045846/93‑1 (MQ=255)
aTGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGTGTTCGaa < 2:3650053/93‑1 (MQ=255)
tGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGTGCATATTGCCGCGTTCGaaa < 2:3831977/93‑1 (MQ=255)
tGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGaaa < 1:4636252/93‑1 (MQ=255)
ggAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGTTTTTATCGCGCGAATCGAAGCGCATATTGCCGCGTTCGAAAt < 1:2507648/93‑1 (MQ=255)
ggAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAAt > 2:1653179/1‑93 (MQ=255)
agaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCtt > 1:1475617/1‑93 (MQ=255)
agaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCtt < 2:3168351/93‑1 (MQ=255)
agaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCtt < 1:2252572/93‑1 (MQ=255)
gaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCttt > 1:4466680/1‑93 (MQ=255)
aaaTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTa < 1:464892/93‑1 (MQ=255)
aaTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTAc < 1:2988988/93‑1 (MQ=255)
aaTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTAc < 1:2305124/93‑1 (MQ=255)
aTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACt < 2:2955535/93‑1 (MQ=255)
tCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACtt > 1:3215392/1‑93 (MQ=255)
cAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTa > 1:335152/1‑93 (MQ=255)
gCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAAc > 2:4455373/1‑93 (MQ=255)
gCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAAc < 1:1699391/93‑1 (MQ=255)
gCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAAc < 2:4031913/93‑1 (MQ=255)
aGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTc > 2:2382855/1‑93 (MQ=255)
gTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCg < 2:3588048/93‑1 (MQ=255)
tttttGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGa < 1:3814552/93‑1 (MQ=255)
tttttGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGa < 1:3524322/93‑1 (MQ=255)
ttttGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGAt < 2:2021196/93‑1 (MQ=255)
ttttGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGAt < 1:1619651/93‑1 (MQ=255)
tGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGct < 2:534612/93‑1 (MQ=255)
cggcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttc < 1:1647714/93‑1 (MQ=255)
ggcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCACATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttct > 1:2687150/1‑93 (MQ=255)
ggccTCAGCAGTTTTATCTGGTCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCTCGTTCGAAATCTTTACTTAACTTCGATGcttct < 2:1037413/93‑1 (MQ=255)
gcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttctt > 2:387908/1‑93 (MQ=255)
gcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttctt < 1:588313/93‑1 (MQ=255)
gcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttctt < 2:2744834/93‑1 (MQ=255)
gcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttctt < 2:2314123/93‑1 (MQ=255)
gcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttctt < 1:3082197/93‑1 (MQ=255)
gcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCCATGcttctt > 2:2367680/1‑93 (MQ=255)
gcgTCAGCAGTTTTATCTGGGACACGATTTTATGACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttctt > 2:3064069/1‑93 (MQ=255)
tCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGc > 1:388272/1‑93 (MQ=255)
cagcagTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGcc < 1:3912813/93‑1 (MQ=255)
cagcagTTTTATCGGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGcc < 2:2099676/93‑1 (MQ=255)
gcagTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGa > 1:4582392/1‑93 (MQ=255)
agTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGc < 1:1581963/93‑1 (MQ=255)
ggtttATCTGGGCCACGATGTTATCATGCGAAGCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACATCGATGCTGCTTCGCCGAGCg > 1:4687020/3‑93 (MQ=255)
gTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCg > 2:3322781/1‑93 (MQ=255)
gTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCg > 2:3085145/1‑93 (MQ=255)
gTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCCAGCg > 2:3852422/1‑93 (MQ=255)
ttttATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTNCGATGCTTCTTCGCCGAGCGt > 1:2230162/1‑93 (MQ=255)
tttATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGtt < 1:3809167/93‑1 (MQ=255)
ttATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGttt < 2:963664/93‑1 (MQ=255)
tCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCg > 2:4558178/1‑93 (MQ=255)
tCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCg > 2:571830/1‑93 (MQ=255)
tCTGGGCCACGATTTTATCACGCGAATCGAAGAGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGACGAGCGTTTGCg > 2:4347830/1‑93 (MQ=255)
cTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCgg < 2:4152773/93‑1 (MQ=255)
cTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCgg < 2:507090/93‑1 (MQ=255)
cTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCgg < 2:4534270/93‑1 (MQ=255)
gCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGcc > 2:1577389/1‑93 (MQ=255)
gCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGAGGTGcc > 1:754369/1‑93 (MQ=255)
ccACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCt > 1:106408/1‑93 (MQ=255)
cACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTg > 1:3483773/1‑93 (MQ=255)
cACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTg < 2:3384404/93‑1 (MQ=255)
aCGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgc < 1:1203685/93‑1 (MQ=255)
aCGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgc > 1:4327357/1‑93 (MQ=255)
aCGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgc > 2:2648740/1‑93 (MQ=255)
cGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgca < 2:3491001/93‑1 (MQ=255)
cGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgca < 1:499260/93‑1 (MQ=255)
gATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgcag > 2:63646/1‑93 (MQ=255)
gATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgcag > 1:3425968/1‑93 (MQ=255)
aTTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgcagc > 2:237154/1‑93 (MQ=255)
ttATCACGCGAATCGAAGCGCATATTGCCGCGTTTGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATc < 2:367119/93‑1 (MQ=255)
tATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCt > 1:701174/1‑93 (MQ=255)
tCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTgg < 2:171475/93‑1 (MQ=255)
tCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTgg < 1:280007/93‑1 (MQ=255)
tCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTgg > 2:1589305/1‑93 (MQ=255)
cACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTggg > 1:1979688/1‑93 (MQ=255)
aCGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGt > 1:2042922/1‑93 (MQ=255)
aCGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGt < 1:2045823/93‑1 (MQ=255)
aCGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGt > 2:2662722/1‑93 (MQ=255)
aCGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGt > 1:1969458/1‑93 (MQ=255)
gcgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTaa < 1:363782/93‑1 (MQ=255)
cgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAAt < 2:2556881/93‑1 (MQ=255)
cgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAAt < 2:2481068/93‑1 (MQ=255)
cgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAAt < 1:3086592/93‑1 (MQ=255)
gAATCGAAGCGAATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAAtt > 1:2908962/1‑93 (MQ=255)
aaTCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTa > 2:2830965/1‑93 (MQ=255)
aaTCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTa < 2:76596/93‑1 (MQ=255)
aTCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAc < 2:3951124/93‑1 (MQ=255)
tCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAcc > 1:1109553/1‑93 (MQ=255)
tCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAcc > 2:4507201/1‑93 (MQ=255)
gAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGc > 2:1103690/1‑93 (MQ=255)
aaGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGcc < 2:1489464/93‑1 (MQ=255)
cgcAGATTGCCGCGTTCGAAATCTTTACTTAGCTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCctgc < 1:3186221/93‑1 (MQ=255)
gcATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGgctgct > 1:3562555/1‑93 (MQ=255)
gcATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCctgct > 2:2178959/1‑93 (MQ=255)
cATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCctgctg < 2:1136884/93‑1 (MQ=255)
tGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCACCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGAttt < 2:4096170/93‑1 (MQ=255)
gCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTg > 2:1853944/1‑93 (MQ=255)
gCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTg > 2:1300421/1‑93 (MQ=255)
ccGCGTTCGAAATCTTTACTTAGCTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTgc < 2:4491269/93‑1 (MQ=255)
ccGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTgc < 1:973654/93‑1 (MQ=255)
gcgTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTgcgc > 2:4235337/1‑93 (MQ=255)
gcgATCGAAATCTCTACTTAACTCCGATGCTTCTCCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGTGTAATTACCGACCGCTGGATTcgcga > 2:3115115/1‑92 (MQ=255)
|
CTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGATCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGC > NC_000913/2954174‑2954353
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGATCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAAAC > NC_000913/2954172‑2954357
|
GCCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTT < SRR4302535.3340791/94‑1 (MQ=60)
GCCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTT > SRR4302535.4190511/1‑94 (MQ=60)
CCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTC < SRR4302535.2207136/94‑1 (MQ=60)
CATGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTC < SRR4302535.415913/94‑1 (MQ=60)
TGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAAT < SRR4302535.231533/94‑1 (MQ=60)
TGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAAT < SRR4302535.4667700/94‑1 (MQ=60)
GGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGTTTTTATCGCGCGAATCGAAGCGCATATTGCCGCGTTCGAAATC < SRR4302535.2525726/94‑1 (MQ=60)
AAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTT > SRR4302535.1486183/1‑94 (MQ=60)
AGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTT < SRR4302535.2268612/94‑1 (MQ=60)
AGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTT > SRR4302535.4497325/1‑94 (MQ=60)
AAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTAC < SRR4302535.468142/94‑1 (MQ=60)
AATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACT < SRR4302535.2321613/94‑1 (MQ=60)
AATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACT < SRR4302535.3009944/94‑1 (MQ=60)
ATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTT > SRR4302535.3156/1‑94 (MQ=60)
ATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTT > SRR4302535.3237660/1‑94 (MQ=60)
TCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTA > SRR4302535.337469/1‑94 (MQ=60)
CAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAA > SRR4302535.3442526/1‑94 (MQ=60)
AGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAAC < SRR4302535.3724585/94‑1 (MQ=60)
GCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACT < SRR4302535.1711672/94‑1 (MQ=60)
CAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATAACGCGATTCGAAGGGCATATTGCCGCGTTCGAAATTTTTACTTAACTC > SRR4302535.281725/1‑94 (MQ=60)
GTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGA < SRR4302535.3230851/94‑1 (MQ=60)
GTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGA < SRR4302535.4516111/94‑1 (MQ=60)
TTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGAT < SRR4302535.3548799/94‑1 (MQ=60)
TTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGAT < SRR4302535.3840873/94‑1 (MQ=60)
TTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGAT < SRR4302535.3058574/94‑1 (MQ=60)
TTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGAT < SRR4302535.636079/94‑1 (MQ=60)
TTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATG < SRR4302535.1631332/94‑1 (MQ=60)
TTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATG < SRR4302535.4672739/94‑1 (MQ=60)
TCTTGCGGCGTCAGCAGTTTTGTCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATG < SRR4302535.932401/94‑1 (MQ=60)
TTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCT < SRR4302535.4638202/94‑1 (MQ=60)
CGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCT < SRR4302535.1659626/94‑1 (MQ=60)
CGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCACATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCT > SRR4302535.2706360/1‑94 (MQ=60)
GGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTT < SRR4302535.98066/94‑1 (MQ=60)
GCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTC < SRR4302535.592439/94‑1 (MQ=60)
GCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTC < SRR4302535.4044860/94‑1 (MQ=60)
GCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTC < SRR4302535.3103679/94‑1 (MQ=60)
GTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGC < SRR4302535.3514541/94‑1 (MQ=60)
GTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGC > SRR4302535.390968/1‑94 (MQ=60)
GTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGC > SRR4302535.390969/1‑94 (MQ=60)
CAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCG < SRR4302535.3939595/94‑1 (MQ=60)
AGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGA > SRR4302535.4613600/1‑94 (MQ=60)
AGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGA > SRR4302535.392648/1‑94 (MQ=60)
CAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGC > SRR4302535.4401033/1‑94 (MQ=60)
AGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCG < SRR4302535.1593383/94‑1 (MQ=60)
AGGTTTATCTGGGCCACGATGTTATCATGCGAAGCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACATCGATGCTGCTTCGCCGAGCG > SRR4302535.4718825/1‑94 (MQ=60)
GTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTNCGATGCTTCTTCGCCGAGCGT > SRR4302535.2246021/1‑94 (MQ=60)
TTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTT > SRR4302535.707406/1‑94 (MQ=60)
TTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTT < SRR4302535.1706168/94‑1 (MQ=60)
TTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTT < SRR4302535.1535746/94‑1 (MQ=60)
TTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTT < SRR4302535.1441701/94‑1 (MQ=60)
TTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTT < SRR4302535.3835446/94‑1 (MQ=60)
TTATCTGGGCCACGATTTTATCACGCGAAGCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTG < SRR4302535.2023885/94‑1 (MQ=60)
TCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGG < SRR4302535.3566438/94‑1 (MQ=60)
CTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGT > SRR4302535.1609893/1‑94 (MQ=60)
GGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGAGGTGCC > SRR4302535.759682/1‑94 (MQ=60)
GCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCT > SRR4302535.107163/1‑94 (MQ=60)
gccccATTTTATCACGCCAATCCAAGCGCATAATGGCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTG < SRR4302535.1890882/89‑1 (MQ=60)
CCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTG > SRR4302535.3507962/1‑94 (MQ=60)
CACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGC > SRR4302535.4356951/1‑94 (MQ=60)
ACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCA < SRR4302535.1212326/94‑1 (MQ=60)
CGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAG < SRR4302535.3461204/94‑1 (MQ=60)
CGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAG < SRR4302535.502762/94‑1 (MQ=60)
CGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAG > SRR4302535.3449791/1‑94 (MQ=60)
GATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGC > SRR4302535.499291/1‑94 (MQ=60)
TTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGTGTTTGCGGTGCCTGCAGCATCT < SRR4302535.1202356/94‑1 (MQ=60)
TTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCT > SRR4302535.2775134/1‑94 (MQ=60)
TTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCT > SRR4302535.706090/1‑94 (MQ=60)
TTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCT < SRR4302535.4694872/94‑1 (MQ=60)
TTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCT < SRR4302535.1985941/94‑1 (MQ=60)
TCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGG > SRR4302535.1993942/1‑94 (MQ=60)
TCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGG < SRR4302535.281959/94‑1 (MQ=60)
CACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGT > SRR4302535.1983646/1‑94 (MQ=60)
CACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGT > SRR4302535.2057640/1‑94 (MQ=60)
CACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGT > SRR4302535.2268322/1‑94 (MQ=60)
ACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTA < SRR4302535.2060556/94‑1 (MQ=60)
GCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAAT < SRR4302535.366289/94‑1 (MQ=60)
CGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATT < SRR4302535.3108089/94‑1 (MQ=60)
CGAATCGAAGCGAATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATT > SRR4302535.2929519/1‑94 (MQ=60)
GAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTA < SRR4302535.2166153/94‑1 (MQ=60)
AATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAC > SRR4302535.2441581/1‑94 (MQ=60)
ATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACC > SRR4302535.1117478/1‑94 (MQ=60)
CGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGC > SRR4302535.283301/1‑94 (MQ=60)
AGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTG < SRR4302535.2951652/94‑1 (MQ=60)
AGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTG > SRR4302535.784834/1‑94 (MQ=60)
CGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGGCTGCT > SRR4302535.3587256/1‑94 (MQ=60)
CGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCT > SRR4302535.1852784/1‑94 (MQ=60)
CGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCT < SRR4302535.3261288/94‑1 (MQ=60)
CGCAGATTGCCGCGTTCGAAATCTTTACTTAGCTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCT < SRR4302535.3208255/94‑1 (MQ=60)
GCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTG > SRR4302535.3662925/1‑94 (MQ=60)
TGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTG < SRR4302535.1655477/94‑1 (MQ=60)
CCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCG < SRR4302535.980563/94‑1 (MQ=60)
CCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCG > SRR4302535.2565044/1‑94 (MQ=60)
GCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCA > SRR4302535.2284763/1‑94 (MQ=60)
CGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAA > SRR4302535.3720625/1‑94 (MQ=60)
GTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAAA > SRR4302535.2472494/1‑94 (MQ=60)
GTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAAA > SRR4302535.827859/1‑94 (MQ=60)
TTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTACTTACCGCCTGCTCGATTTGCGCAAAC > SRR4302535.4607883/1‑94 (MQ=60)
TTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAAAC < SRR4302535.2784681/94‑1 (MQ=60)
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GCCTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGATCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGCAAAC > NC_000913/2954172‑2954357
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
