Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,977,854	T→C	L271P (CTG→CCG)	lysR →	LysR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,977,854	0	T	C	100.0%	526.4 / NA	170	L271P (CTG→CCG)	lysR	LysR
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (79/91); total (79/91)

Only 100 of 179 total aligned reads displayed.

CGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTC  >  NC_000913/2977764‑2977943

cGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGa                                                                                         <  1:1095584/93‑1 (MQ=255)

 ggtggtTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGac                                                                                        >  2:3138196/1‑92 (MQ=255)

 ggtggtTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGAt                                                                                        <  2:560107/93‑1 (MQ=255)

  gtggtTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATc                                                                                       <  1:822648/93‑1 (MQ=255)

  gtggtTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATc                                                                                       <  2:4329910/93‑1 (MQ=255)

     gtTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGc                                                                                    >  1:3174998/1‑93 (MQ=255)

         aCCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGccccc                                                                                >  2:1717609/1‑93 (MQ=255)

          cccGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCt                                                                               >  2:1022256/1‑93 (MQ=255)

           ccGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTg                                                                              <  2:3246631/93‑1 (MQ=255)

            cGCTCACCGCACTAGATTATGCGGCAAGTGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGc                                                                             >  2:4393229/1‑93 (MQ=255)

             gCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCa                                                                            >  1:91852/1‑93 (MQ=255)

             gCTCACCGCACTAGATTATGCGGCAAGCGGGTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGGTCACCGTCAGCCCGATCAGCCCCCTGcc                                                                            >  1:890225/1‑92 (MQ=255)

              cTCACCGCACTAGATTATGCGGCAAGCGGTTTTGTGGGGCGGCGGTTCAGTATTTCGGGTCCTTTCACCGTGAGCCCGCTCCGTCCACTGCag                                                                           >  2:1514957/1‑92 (MQ=255)

              cTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCAc                                                                           <  1:336111/93‑1 (MQ=255)

               tCACCGCACTAGATTATGCGGCAAGCGGATTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTGCCCGTCAGCCCGATACGCCCCCTGCagc                                                                          >  1:1620790/1‑91 (MQ=255)

                  ccGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGcc                                                                       >  1:76200/1‑93 (MQ=255)

                   cGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCNCGATCCGCCCCCTGCACCGncc                                                                      >  1:3291246/1‑93 (MQ=255)

                   cGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGccc                                                                      >  1:428822/1‑93 (MQ=255)

                   cGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGccc                                                                      <  2:1219275/93‑1 (MQ=255)

                    gCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCg                                                                     >  1:1040931/1‑93 (MQ=255)

                     cACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGt                                                                    >  1:1746369/1‑93 (MQ=255)

                      aCTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtc                                                                   <  2:4054082/93‑1 (MQ=255)

                      aCTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtc                                                                   >  2:2483685/1‑93 (MQ=255)

                       cTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtca                                                                  >  1:169312/1‑93 (MQ=255)

                       cTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtca                                                                  >  1:1846385/1‑93 (MQ=255)

                       cTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtca                                                                  <  1:2096789/93‑1 (MQ=255)

                         aGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCTCCCCCTGCACCGCCCGtcatc                                                                <  1:566574/93‑1 (MQ=255)

                         aGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtcatc                                                                >  2:3636164/1‑93 (MQ=255)

                         aGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtcatc                                                                >  1:3938557/1‑93 (MQ=255)

                         aGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtcatc                                                                <  1:4125470/93‑1 (MQ=255)

                            ttATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAgc                                                             >  2:1361517/1‑93 (MQ=255)

                            ttATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAgc                                                             <  1:4495361/93‑1 (MQ=255)

                            ttATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAgc                                                             <  1:2107542/93‑1 (MQ=255)

                             tATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAgcg                                                            <  2:1939135/93‑1 (MQ=255)

                              aTGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAgcgc                                                           <  2:4485205/93‑1 (MQ=255)

                                 cGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTgg                                                        >  1:895282/1‑93 (MQ=255)

                                   gCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCATTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGtt                                                      <  1:1537516/93‑1 (MQ=255)

                                      aGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAg                                                   <  1:286554/93‑1 (MQ=255)

                                      aGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAg                                                   <  2:2647327/93‑1 (MQ=255)

                                        cGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGc                                                 <  2:181128/93‑1 (MQ=255)

                                          gTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGt                                               >  1:838012/1‑93 (MQ=255)

                                          gTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGt                                               <  2:3567477/93‑1 (MQ=255)

                                            ttAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTCCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGttt                                             <  2:3192270/93‑1 (MQ=255)

                                             tAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTa                                            >  2:1936275/1‑93 (MQ=255)

                                               gtggtgCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGt                                          <  2:787433/93‑1 (MQ=255)

                                                tggtgCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTg                                         >  1:1652294/1‑93 (MQ=255)

                                                 ggtgCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTgg                                        <  2:4433421/93‑1 (MQ=255)

                                                 ggtgCGGCGGGTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTgg                                        >  1:3667760/1‑93 (MQ=255)

                                                  gtgCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTggg                                       <  2:63681/93‑1 (MQ=255)

                                                   tgCGGCGTTTCAGTATTGCGGTTCCGTTCTCCGTCAGCCCGATCCTCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGc                                      <  2:2320883/93‑1 (MQ=255)

                                                   tgCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGc                                      <  1:3250122/93‑1 (MQ=255)

                                                    gcggcgGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCa                                     >  1:200067/1‑93 (MQ=255)

                                                        cggTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTa                                 <  2:3271022/93‑1 (MQ=255)

                                                        cggTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTa                                 <  2:4088628/93‑1 (MQ=255)

                                                        cggTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTa                                 <  2:703832/93‑1 (MQ=255)

                                                        cggTTCAGTATTGCGGCTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTa                                 <  2:3010707/93‑1 (MQ=255)

                                                         ggTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTAc                                >  2:3710192/1‑93 (MQ=255)

                                                         ggTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTAc                                >  2:2264270/1‑93 (MQ=255)

                                                          gTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACa                               >  2:4260338/1‑93 (MQ=255)

                                                          gTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACa                               >  2:1957882/1‑93 (MQ=255)

                                                           ttCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACaa                              >  2:3041709/1‑93 (MQ=255)

                                                           ttCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACaa                              <  2:1674757/93‑1 (MQ=255)

                                                           ttCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACaa                              <  1:4506978/93‑1 (MQ=255)

                                                            tCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAg                             >  2:4209981/1‑93 (MQ=255)

                                                            tCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAg                             <  2:461778/93‑1 (MQ=255)

                                                             cAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGc                            <  1:1949089/93‑1 (MQ=255)

                                                              aGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCg                           >  2:1290358/1‑93 (MQ=255)

                                                               gTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCgg                          <  2:756833/93‑1 (MQ=255)

                                                                tATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCggg                         <  2:2990162/93‑1 (MQ=255)

                                                                tATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCggg                         >  1:480400/1‑93 (MQ=255)

                                                                tATGGCGGTTCCGTTCACCGTCAGCCCGACCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCggg                         <  1:1267808/93‑1 (MQ=255)

                                                                  ttGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGt                       >  2:2063083/1‑93 (MQ=255)

                                                                  ttGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGt                       >  2:154848/1‑93 (MQ=255)

                                                                  ttGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGt                       <  1:4254358/93‑1 (MQ=255)

                                                                   tGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGtt                      >  2:885341/1‑93 (MQ=255)

                                                                   tGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGtt                      <  2:3352265/93‑1 (MQ=255)

                                                                   tGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGtt                      <  1:2457327/93‑1 (MQ=255)

                                                                    gCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTa                     <  2:2502020/93‑1 (MQ=255)

                                                                     cGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTAc                    <  1:1818978/93‑1 (MQ=255)

                                                                       gTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCg                  <  2:3043884/93‑1 (MQ=255)

                                                                       gTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCg                  >  1:1928701/1‑93 (MQ=255)

                                                                         tCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGaa                >  2:1423843/1‑93 (MQ=255)

                                                                           cGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAAc              >  2:2616467/1‑93 (MQ=255)

                                                                            gTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACt             >  1:746218/1‑93 (MQ=255)

                                                                            gTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACt             >  1:3453785/1‑93 (MQ=255)

                                                                            gTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACt             <  2:1121767/93‑1 (MQ=255)

                                                                             ttCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTg            >  1:4024660/1‑93 (MQ=255)

                                                                             ttCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTg            >  2:3684149/1‑93 (MQ=255)

                                                                             ttCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTg            >  1:1764437/1‑93 (MQ=255)

                                                                             ttCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTg            <  1:30476/93‑1 (MQ=255)

                                                                             ttCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTg            >  2:1164076/1‑93 (MQ=255)

                                                                              tCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTgg           <  2:3458247/93‑1 (MQ=255)

                                                                                aCCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTc         <  1:4633053/93‑1 (MQ=255)

                                                                                   gTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACt      >  2:3020249/1‑93 (MQ=255)

                                                                                    tCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACtt     <  1:3974126/93‑1 (MQ=255)

                                                                                     cAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTtc    <  2:2143423/93‑1 (MQ=255)

                                                                                     cAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTtc    <  2:3633257/93‑1 (MQ=255)

                                                                                      aGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTtct   >  1:3556313/1‑93 (MQ=255)

                                                                                       gCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTtctc  >  2:3848979/1‑93 (MQ=255)

                                                                                       gCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTtctc  >  1:515872/1‑93 (MQ=255)

CGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTC  >  NC_000913/2977764‑2977943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGA  >  NC_000913/2977764‑2977947

CGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGAT                                                                                            <  SRR4302535.1103379/94‑1 (MQ=60)

  GTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCC                                                                                          <  SRR4302535.828415/94‑1 (MQ=60)

  GTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCC                                                                                          >  SRR4302535.2380697/1‑94 (MQ=60)

   TGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCG                                                                                         <  SRR4302535.803744/94‑1 (MQ=60)

    GGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGC                                                                                        >  SRR4302535.3196969/1‑94 (MQ=60)

     GTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCC                                                                                       >  SRR4302535.3979758/1‑94 (MQ=60)

         ACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCT                                                                                   <  SRR4302535.4414340/94‑1 (MQ=60)

            CGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCA                                                                                >  SRR4302535.92501/1‑94 (MQ=60)

            CGCTCACCGCACTAGATTATGCGGCAAGCGGGTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGGTCACCGTCAGCCCGATCAGCCCCCTGCC                                                                                >  SRR4302535.896533/1‑94 (MQ=60)

             GCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCAC                                                                               >  SRR4302535.1797260/1‑94 (MQ=60)

             GCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCAC                                                                               >  SRR4302535.3751851/1‑94 (MQ=60)

              CTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACC                                                                              <  SRR4302535.338437/94‑1 (MQ=60)

              CTCACCGCACTAGATTATGCGGCAAGCGGATTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTGCCCGTCAGCCCGATACGCCCCCTGCAGC                                                                              >  SRR4302535.1632483/1‑94 (MQ=60)

                 ACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCC                                                                           >  SRR4302535.76753/1‑94 (MQ=60)

                  CCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCNCGATCCGCCCCCTGCACCGNCC                                                                          >  SRR4302535.3314130/1‑94 (MQ=60)

                  CCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCC                                                                          >  SRR4302535.431804/1‑94 (MQ=60)

                  CCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCC                                                                          <  SRR4302535.2493142/94‑1 (MQ=60)

                   CGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCG                                                                         >  SRR4302535.1048312/1‑94 (MQ=60)

                    GCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGT                                                                        >  SRR4302535.1759003/1‑94 (MQ=60)

                      ACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCA                                                                      >  SRR4302535.1859692/1‑94 (MQ=60)

                      ACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCA                                                                      >  SRR4302535.170488/1‑94 (MQ=60)

                       CTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCAT                                                                     <  SRR4302535.2111910/94‑1 (MQ=60)

                        TAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATC                                                                    >  SRR4302535.3965438/1‑94 (MQ=60)

                         AGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCTCCCCCTGCACCGCCCGTCATCA                                                                   <  SRR4302535.570538/94‑1 (MQ=60)

                         AGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCA                                                                   >  SRR4302535.910877/1‑94 (MQ=60)

                         AGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCA                                                                   <  SRR4302535.4153704/94‑1 (MQ=60)

                         AGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCA                                                                   <  SRR4302535.3313702/94‑1 (MQ=60)

                            TTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCG                                                                <  SRR4302535.1614025/94‑1 (MQ=60)

                            TTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCG                                                                <  SRR4302535.4526217/94‑1 (MQ=60)

                            TTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCG                                                                <  SRR4302535.2122744/94‑1 (MQ=60)

                                GCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGG                                                            >  SRR4302535.901632/1‑94 (MQ=60)

                                   GCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCATTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTC                                                         <  SRR4302535.1548595/94‑1 (MQ=60)

                                     AAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAG                                                       <  SRR4302535.1924953/94‑1 (MQ=60)

                                      AGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGG                                                      >  SRR4302535.833562/1‑94 (MQ=60)

                                      AGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGG                                                      <  SRR4302535.863238/94‑1 (MQ=60)

                                      AGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGG                                                      <  SRR4302535.288559/94‑1 (MQ=60)

                                         GGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGT                                                   >  SRR4302535.843895/1‑94 (MQ=60)

                                           TTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCGTCAGCGCTGGTTCAGGCGGTT                                                 >  SRR4302535.3671799/1‑94 (MQ=60)

                                           TTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTT                                                 <  SRR4302535.52635/94‑1 (MQ=60)

                                           GTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTT                                                 <  SRR4302535.3460708/94‑1 (MQ=60)

                                             TAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAG                                               <  SRR4302535.1984435/94‑1 (MQ=60)

                                               GTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTG                                             >  SRR4302535.1664245/1‑94 (MQ=60)

                                                TGGTGCGGCGGGTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGG                                            >  SRR4302535.3693161/1‑94 (MQ=60)

                                                 GGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGG                                           <  SRR4302535.1772730/94‑1 (MQ=60)

                                                 GGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGG                                           <  SRR4302535.65939/94‑1 (MQ=60)

                                                   TGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCA                                         >  SRR4302535.201437/1‑94 (MQ=60)

                                                   TGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCA                                         <  SRR4302535.3272703/94‑1 (MQ=60)

                                                        CGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTAC                                    >  SRR4302535.1212079/1‑94 (MQ=60)

                                                         GGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACA                                   <  SRR4302535.311013/94‑1 (MQ=60)

                                                           TTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAG                                 <  SRR4302535.4537912/94‑1 (MQ=60)

                                                           TTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAG                                 >  SRR4302535.486937/1‑94 (MQ=60)

                                                            TCAGTATGGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGC                                <  SRR4302535.2038101/94‑1 (MQ=60)

                                                             CAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCG                               <  SRR4302535.1963119/94‑1 (MQ=60)

                                                              AGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGG                              >  SRR4302535.1673256/1‑94 (MQ=60)

                                                               GTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGG                             >  SRR4302535.483769/1‑94 (MQ=60)

                                                                TATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGG                            >  SRR4302535.4704422/1‑94 (MQ=60)

                                                                TATGGCGGTTCCGTTCACCGTCAGCCCGACCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGG                            <  SRR4302535.1276879/94‑1 (MQ=60)

                                                                 ATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGT                           >  SRR4302535.4009549/1‑94 (MQ=60)

                                                                  TTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTT                          <  SRR4302535.4283505/94‑1 (MQ=60)

                                                                   TGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTA                         <  SRR4302535.2475050/94‑1 (MQ=60)

                                                                     CGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACC                       <  SRR4302535.1832123/94‑1 (MQ=60)

                                                                      GGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCG                      >  SRR4302535.1942601/1‑94 (MQ=60)

                                                                          CCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAAC                  <  SRR4302535.1478739/94‑1 (MQ=60)

                                                                           CGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACT                 >  SRR4302535.751465/1‑94 (MQ=60)

                                                                           CGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACT                 >  SRR4302535.3477794/1‑94 (MQ=60)

                                                                            GTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTG                >  SRR4302535.1777224/1‑94 (MQ=60)

                                                                            GTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTG                >  SRR4302535.4052196/1‑94 (MQ=60)

                                                                            GTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTG                <  SRR4302535.1752476/94‑1 (MQ=60)

                                                                             TTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGG               <  SRR4302535.30711/94‑1 (MQ=60)

                                                                                ACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCA            <  SRR4302535.4288221/94‑1 (MQ=60)

                                                                                ACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCA            <  SRR4302535.4664485/94‑1 (MQ=60)

                                                                                 CCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCAC           <  SRR4302535.4265417/94‑1 (MQ=60)

                                                                                 CCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGGTACCGAAACTGGTCAC           >  SRR4302535.1947164/1‑94 (MQ=60)

                                                                                  CGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACT          <  SRR4302535.928500/94‑1 (MQ=60)

                                                                                  CGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACT          >  SRR4302535.4528869/1‑94 (MQ=60)

                                                                                   GTCAGCCCGATCCGACCCCCGCAACGCCCGTCATCAGCGCTCGTTCAGGCGTGTAGTGTGCATTTACAAGCGGGGTTACCGAAACTGGTCACTT         >  SRR4302535.1872105/1‑94 (MQ=60)

                                                                                    TCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTC        <  SRR4302535.4001272/94‑1 (MQ=60)

                                                                                     CAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCT       >  SRR4302535.3580980/1‑94 (MQ=60)

                                                                                      AGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCCGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTC      >  SRR4302535.3330709/1‑94 (MQ=60)

                                                                                      AGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTC      >  SRR4302535.519478/1‑94 (MQ=60)

                                                                                       GCCCGATCCGCCCCCTGCCCCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCT     <  SRR4302535.2948995/94‑1 (MQ=60)

                                                                                         CCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTG   <  SRR4302535.3578116/94‑1 (MQ=60)

                                                                                         CCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTG   >  SRR4302535.896615/1‑94 (MQ=60)

                                                                                         CCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTG   >  SRR4302535.4616244/1‑94 (MQ=60)

                                                                                          CGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGA  <  SRR4302535.3232599/94‑1 (MQ=60)

                                                                                          CGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGA  >  SRR4302535.3776451/1‑94 (MQ=60)

CGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGA  >  NC_000913/2977764‑2977947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`