Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,977,854 |
T→C |
L271P (CTG→CCG) |
lysR → |
LysR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,977,854 | 0 | T | C | 99.7%
| 884.3
/ NA
| 287 | L271P (CTG→CCG) | lysR | LysR |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (131/155); minor base A (1/0); total (132/155) |
| Fisher's exact test for biased strand distribution p-value = 4.60e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 302 total aligned reads displayed.
CGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTC > NC_000913/2977764‑2977943
|
cGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGa > 1:6064222/1‑93 (MQ=255)
cGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGa < 1:6155067/93‑1 (MQ=255)
ggtggtTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGAt < 2:1865690/93‑1 (MQ=255)
gtggtTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATc > 2:7412666/1‑93 (MQ=255)
gtggtTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATc > 1:4157371/1‑93 (MQ=255)
tgtttAACCCGCTCACCGCACTAGTTTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATcc < 2:6309672/90‑1 (MQ=255)
ttAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCCATCCGcc > 1:7175576/1‑93 (MQ=255)
aaCCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGcccc < 1:3856525/93‑1 (MQ=255)
cccGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCt > 2:1498886/1‑93 (MQ=255)
cccGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCt < 2:5014345/93‑1 (MQ=255)
cGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGc > 1:1782460/1‑93 (MQ=255)
cGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGc > 2:3436751/1‑93 (MQ=255)
cTCACCGCACTAGATTATGCGACAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCAc < 2:4773817/93‑1 (MQ=255)
tCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCAcc > 1:5076003/1‑93 (MQ=255)
tCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCAcc > 2:3256546/1‑93 (MQ=255)
aCCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGc > 2:5895655/1‑93 (MQ=255)
aCCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGc > 1:6862012/1‑93 (MQ=255)
cGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGccc < 1:7507524/93‑1 (MQ=255)
cACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGt > 2:7097946/1‑93 (MQ=255)
aCTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCCGCCCGATCCGCCCCCTGCACCGCCCGtc > 1:3966236/1‑93 (MQ=255)
aCTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtc > 2:674033/1‑93 (MQ=255)
cTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtca > 1:5246769/1‑93 (MQ=255)
tAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtcat > 1:328262/1‑93 (MQ=255)
tAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtcat > 2:3749903/1‑93 (MQ=255)
tAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtcat > 1:3631969/1‑93 (MQ=255)
tAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtcat < 1:3650876/93‑1 (MQ=255)
tAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtcat > 2:6558467/1‑93 (MQ=255)
tAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGGTCCGTTCACCGTCAGCCCGATCCGCACCCTGCACCGCCCGgcat > 2:7744308/1‑93 (MQ=255)
aGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtcatc < 1:5829801/93‑1 (MQ=255)
gATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtcatca > 1:547118/1‑93 (MQ=255)
aaTTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGtcatca < 1:2121524/92‑1 (MQ=255)
ttATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAgc < 2:1071712/93‑1 (MQ=255)
ttATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAgc > 2:1608314/1‑93 (MQ=255)
aTGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAgcgc < 2:7931454/93‑1 (MQ=255)
aTGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAgcgc > 1:4375152/1‑93 (MQ=255)
aTGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCACCAgcgc > 2:2715797/1‑93 (MQ=255)
tGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCt > 2:3611898/1‑93 (MQ=255)
tGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCt < 1:7551583/93‑1 (MQ=255)
gCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTg < 2:2383549/93‑1 (MQ=255)
cGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTgg < 1:2976231/93‑1 (MQ=255)
cGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTgg < 2:169347/93‑1 (MQ=255)
cGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTgg < 2:5746654/93‑1 (MQ=255)
gCAAGCGGTCTAGTGGTGCGGCGATTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGtt < 1:5107794/93‑1 (MQ=255)
cAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTc < 1:3051361/93‑1 (MQ=255)
aaGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCa < 1:6645665/93‑1 (MQ=255)
aGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAg < 1:7027212/93‑1 (MQ=255)
gCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAgg < 2:2324362/93‑1 (MQ=255)
cGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGc < 1:7698933/93‑1 (MQ=255)
gTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGt > 2:4503128/1‑93 (MQ=255)
gTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGt > 2:5987708/1‑93 (MQ=255)
gTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCAGCCCCCTGCACCGCCCGTCATCCGCGCTGGTTCAGGCGt > 2:5316645/1‑93 (MQ=255)
tttAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGtt > 1:776090/1‑93 (MQ=255)
tttAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGtt > 2:2006807/1‑93 (MQ=255)
ttAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGCTCAGGCGgtt > 2:2139252/1‑93 (MQ=255)
tAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTa < 1:736257/93‑1 (MQ=255)
tAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTa < 1:1721371/93‑1 (MQ=255)
aGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAg < 1:2132452/93‑1 (MQ=255)
aGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAg < 1:4274843/93‑1 (MQ=255)
gtggtgCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGt > 2:4154127/1‑93 (MQ=255)
gtggtgCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGt < 1:4522577/93‑1 (MQ=255)
cggcggTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCAt < 2:7247021/93‑1 (MQ=255)
ggcggTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCAtt > 1:7833321/1‑93 (MQ=255)
gcggTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCAttt > 1:5549129/1‑93 (MQ=255)
ggTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTAc > 1:1346686/1‑93 (MQ=255)
gTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACa > 2:180749/1‑93 (MQ=255)
tCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTTGTTCAGGCGTTTAGTGGGCATTTACAAg < 1:1442689/93‑1 (MQ=255)
tCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAg > 2:7343884/1‑93 (MQ=255)
tCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAg < 1:3499395/93‑1 (MQ=255)
tCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAg < 1:6568134/93‑1 (MQ=255)
aGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCg > 2:6288809/1‑93 (MQ=255)
gTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCgg > 1:626001/1‑93 (MQ=255)
gTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCgg < 1:4666904/93‑1 (MQ=255)
gaTTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCggg < 1:1879616/92‑1 (MQ=255)
ttGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGt < 1:1530237/93‑1 (MQ=255)
ttGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGt < 2:2462104/93‑1 (MQ=255)
ttGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGt < 2:5459467/93‑1 (MQ=255)
gCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTa < 2:2879683/93‑1 (MQ=255)
gCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTa < 2:277851/93‑1 (MQ=255)
gTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCg > 1:227820/1‑93 (MQ=255)
gTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCg < 1:3196285/93‑1 (MQ=255)
ccGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGaaa > 1:6310303/1‑93 (MQ=255)
ccGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGaaa > 2:370781/1‑93 (MQ=255)
cGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAAc < 1:2535829/93‑1 (MQ=255)
cGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAAc > 2:4027164/1‑93 (MQ=255)
cGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAAc > 2:706098/1‑93 (MQ=255)
gTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACt > 2:5553408/1‑93 (MQ=255)
gTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACt > 2:6962441/1‑93 (MQ=255)
ttCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTg < 2:175845/93‑1 (MQ=255)
tCACCGTCAGCCCGATCCGCCCCGTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTgg < 2:4294525/93‑1 (MQ=255)
tCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTgg < 2:3808189/93‑1 (MQ=255)
cACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGt < 2:5669060/93‑1 (MQ=255)
aCCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTc > 2:7520627/1‑93 (MQ=255)
aCCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTc < 2:4666365/93‑1 (MQ=255)
aCCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTc > 2:5157424/1‑93 (MQ=255)
ccGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCa < 2:2939772/93‑1 (MQ=255)
tCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACtt > 1:5756978/1‑93 (MQ=255)
tCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACtt > 2:4216912/1‑93 (MQ=255)
tCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACtt > 1:116613/1‑93 (MQ=255)
aGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTtct < 1:4878240/93‑1 (MQ=255)
gCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTtctc < 1:124811/93‑1 (MQ=255)
|
CGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTC > NC_000913/2977764‑2977943
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGA > NC_000913/2977761‑2977947
|
TTTTGGTCGTTAACCGTCTCACCGCACTAGATTATGCGGCAAGCTGGTTAGTGGTGCGTCGGTTCAGGATTGCGGTTCCGTTCACCGTCAGCCC < SRR4302543.4489563/94‑1 (MQ=60)
TTTCGGTGGTTATCCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCC < SRR4302543.5343153/94‑1 (MQ=60)
TTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCC < SRR4302543.2869453/94‑1 (MQ=60)
TCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGA > SRR4302543.6121690/1‑94 (MQ=60)
TCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGA > SRR4302543.2358944/1‑94 (MQ=60)
CGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGAT < SRR4302543.6213337/94‑1 (MQ=60)
CGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCAACGTCAGCCCGAT > SRR4302543.7831711/1‑94 (MQ=60)
GGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATC < SRR4302543.562750/94‑1 (MQ=60)
GGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATC > SRR4302543.4194969/1‑94 (MQ=60)
GGTCGTGAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATC < SRR4302543.1525950/94‑1 (MQ=60)
agtTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTGCCGTGCACCGTCAGCCCGATCCG < SRR4302543.6597303/91‑1 (MQ=60)
TGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCG < SRR4302543.2499625/94‑1 (MQ=60)
GTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCCATCCGCC > SRR4302543.7245238/1‑94 (MQ=60)
TAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCC > SRR4302543.7436817/1‑94 (MQ=60)
AACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCC < SRR4302543.3890600/94‑1 (MQ=60)
AACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCC < SRR4302543.3890598/94‑1 (MQ=60)
AACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCC < SRR4302543.2143998/94‑1 (MQ=60)
ACCCTCTCACCGAACTATAGTATGCTGCAAGCGGTTGAGTGGTGCGGCGGTTCAGTATGGCGGTGCCGTGCACCGTCAGCCCGATCCGCCCCCT < SRR4302543.1483750/94‑1 (MQ=42)
ACCCGCTCGCCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCT < SRR4302543.3047514/94‑1 (MQ=60)
ACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCT < SRR4302543.7368159/94‑1 (MQ=60)
ACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCT < SRR4302543.320304/94‑1 (MQ=60)
CCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGC > SRR4302543.1798398/1‑94 (MQ=60)
CCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGC > SRR4302543.7819886/1‑94 (MQ=60)
CTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCCCCGTCAGCCCGATCCGCCCCCTGCACC < SRR4302543.6358922/94‑1 (MQ=60)
CTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACC > SRR4302543.6575434/1‑94 (MQ=60)
CTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACC > SRR4302543.1915057/1‑94 (MQ=60)
CTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACC > SRR4302543.5122060/1‑94 (MQ=60)
CTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCAATCCGCCCCCTGCACC > SRR4302543.6072691/1‑94 (MQ=60)
TCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCG < SRR4302543.1791053/94‑1 (MQ=60)
CACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGC > SRR4302543.7872005/1‑94 (MQ=60)
CACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGC > SRR4302543.6926678/1‑94 (MQ=60)
CGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCG < SRR4302543.7579271/94‑1 (MQ=60)
CGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCG > SRR4302543.4133887/1‑94 (MQ=60)
CACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCCGCCCGATCCGCCCCCTGCACCGCCCGTC > SRR4302543.4001375/1‑94 (MQ=60)
CACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTC < SRR4302543.558428/94‑1 (MQ=60)
CACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTC < SRR4302543.469757/94‑1 (MQ=60)
ACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCA > SRR4302543.1810005/1‑94 (MQ=60)
ACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCA > SRR4302543.6665638/1‑94 (MQ=60)
ACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCA > SRR4302543.5294068/1‑94 (MQ=60)
CTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCAT > SRR4302543.665552/1‑94 (MQ=60)
CTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCAT > SRR4302543.3663945/1‑94 (MQ=60)
CTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCAT > SRR4302543.331267/1‑94 (MQ=60)
CTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTAAGCCACGTCCGCCCCCTGCACCGCCCGTCAT > SRR4302543.331264/1‑94 (MQ=60)
CTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTAACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCAC > SRR4302543.6483973/1‑94 (MQ=60)
TAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATC > SRR4302543.7422344/1‑94 (MQ=60)
TAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATC > SRR4302543.7668308/1‑94 (MQ=60)
TAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATC < SRR4302543.3682958/94‑1 (MQ=60)
TAGATTATGCGGCAAGCGGTTTAGCGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATC > SRR4302543.4727905/1‑94 (MQ=60)
AGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCA < SRR4302543.5882825/94‑1 (MQ=60)
AGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCA > SRR4302543.552164/1‑94 (MQ=60)
AGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCA < SRR4302543.953715/94‑1 (MQ=60)
AGATTATGCGGAAAGCGGTTTAGGGGTGTGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCA < SRR4302543.5882824/94‑1 (MQ=60)
GATTATGCGGCAAGCGGTTTAGTGGTGCGGCCGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAG < SRR4302543.7588168/94‑1 (MQ=60)
AATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAG < SRR4302543.2140519/94‑1 (MQ=60)
ATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGC > SRR4302543.4552435/1‑94 (MQ=60)
TATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGC > SRR4302543.4414790/1‑94 (MQ=60)
ATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCT < SRR4302543.2188713/94‑1 (MQ=60)
ATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCT < SRR4302543.5869714/94‑1 (MQ=60)
TGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTG < SRR4302543.6241534/94‑1 (MQ=60)
TGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTG < SRR4302543.7623507/94‑1 (MQ=60)
TGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTG > SRR4302543.7611152/1‑94 (MQ=60)
CGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGT < SRR4302543.3003260/94‑1 (MQ=60)
GCAAGCGGTCTAGTGGTGCGGCGATTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTC < SRR4302543.5154011/94‑1 (MQ=60)
CAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCA < SRR4302543.3078848/94‑1 (MQ=60)
AAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAG < SRR4302543.6708389/94‑1 (MQ=60)
AAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAG > SRR4302543.1247589/1‑94 (MQ=60)
AGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGG > SRR4302543.2029/1‑94 (MQ=60)
AGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGG < SRR4302543.7094669/94‑1 (MQ=60)
AGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGG < SRR4302543.3278547/94‑1 (MQ=60)
AGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGG > SRR4302543.43137/1‑94 (MQ=60)
AGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGG < SRR4302543.3573711/94‑1 (MQ=60)
CGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCG < SRR4302543.7771802/94‑1 (MQ=60)
CGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCG > SRR4302543.6957270/1‑94 (MQ=60)
GGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGT < SRR4302543.695991/94‑1 (MQ=60)
GGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGT > SRR4302543.1530751/1‑94 (MQ=60)
GGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGCCATCAGCGCTGGTTCAGGCGT > SRR4302543.613952/1‑94 (MQ=60)
GTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTT > SRR4302543.782910/1‑94 (MQ=60)
TTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTT > SRR4302543.4498449/1‑94 (MQ=60)
TTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTT > SRR4302543.1443270/1‑94 (MQ=60)
TAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAG < SRR4302543.1736728/94‑1 (MQ=60)
TAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAG < SRR4302543.742849/94‑1 (MQ=60)
TAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAG < SRR4302543.1847936/94‑1 (MQ=60)
TAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAG < SRR4302543.6301148/94‑1 (MQ=60)
TAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAG < SRR4302543.2834700/94‑1 (MQ=60)
AGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGT < SRR4302543.2151544/94‑1 (MQ=60)
AGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGT < SRR4302543.1645947/94‑1 (MQ=60)
AGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGT < SRR4302543.4313695/94‑1 (MQ=60)
AGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGT < SRR4302543.3198188/94‑1 (MQ=60)
AGTGGTGCGGCCGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGT < SRR4302543.2151543/94‑1 (MQ=60)
GTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTG < SRR4302543.3937922/94‑1 (MQ=60)
GTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTG < SRR4302543.5550823/94‑1 (MQ=60)
GTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTG < SRR4302543.5234308/94‑1 (MQ=60)
GTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTG < SRR4302543.4563711/94‑1 (MQ=60)
TGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGG < SRR4302543.5365525/94‑1 (MQ=60)
GTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGC < SRR4302543.7545075/94‑1 (MQ=60)
TGCGGCGGTTCAGTATTGCGGTTCCGTTCCCCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCA < SRR4302543.5007847/94‑1 (MQ=60)
GCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCAT < SRR4302543.5144491/94‑1 (MQ=60)
GCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCAT < SRR4302543.3711649/94‑1 (MQ=60)
CGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATT > SRR4302543.7907070/1‑94 (MQ=60)
GGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTT < SRR4302543.6752910/94‑1 (MQ=60)
GGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTT > SRR4302543.5599594/1‑94 (MQ=60)
CGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTAC > SRR4302543.1358725/1‑94 (MQ=60)
GGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACA < SRR4302543.6852559/94‑1 (MQ=60)
GGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACA > SRR4302543.4599128/1‑94 (MQ=60)
TTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAG < SRR4302543.354440/94‑1 (MQ=60)
TTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAG > SRR4302543.5468234/1‑94 (MQ=60)
TTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAG < SRR4302543.6055981/94‑1 (MQ=60)
TTCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCCGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAG > SRR4302543.1400569/1‑94 (MQ=60)
TCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTTGTTCAGGCGTTTAGTGGGCATTTACAAGC < SRR4302543.1455718/94‑1 (MQ=60)
TCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGC < SRR4302543.3530696/94‑1 (MQ=60)
TCAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGC < SRR4302543.6629960/94‑1 (MQ=60)
CAGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCG < SRR4302543.3805016/94‑1 (MQ=60)
AGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGG < SRR4302543.1332012/94‑1 (MQ=60)
AGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGG > SRR4302543.631729/1‑94 (MQ=60)
AGTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGCGGGCATTTACAAGCGG > SRR4302543.7113669/1‑94 (MQ=60)
GTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGG < SRR4302543.4709439/94‑1 (MQ=60)
GTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGG < SRR4302543.4182131/94‑1 (MQ=60)
GTATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGG < SRR4302543.1697702/94‑1 (MQ=60)
TATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGG > SRR4302543.36784/1‑94 (MQ=60)
TATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGG > SRR4302543.36783/1‑94 (MQ=60)
GATTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGG < SRR4302543.1896507/94‑1 (MQ=60)
TTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTT < SRR4302543.1543957/94‑1 (MQ=60)
TTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTT < SRR4302543.7975416/94‑1 (MQ=60)
TTGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTT < SRR4302543.1742274/94‑1 (MQ=60)
TGCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTA > SRR4302543.5852450/1‑94 (MQ=60)
TCGGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTAC < SRR4302543.7682306/94‑1 (MQ=60)
GGTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCG > SRR4302543.229790/1‑94 (MQ=60)
GTTCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGA < SRR4302543.3225101/94‑1 (MQ=60)
TCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAA > SRR4302543.6369649/1‑94 (MQ=60)
TCCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAA > SRR4302543.5185296/1‑94 (MQ=60)
CCGTTCGCCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAAC < SRR4302543.5126035/94‑1 (MQ=60)
CCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGTGGTTAGCGAAAC > SRR4302543.3492375/1‑94 (MQ=60)
CCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAAC < SRR4302543.2249645/94‑1 (MQ=60)
CCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAAC < SRR4302543.7861587/94‑1 (MQ=60)
CCGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAAC < SRR4302543.3025795/94‑1 (MQ=60)
CGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACT < SRR4302543.2558931/94‑1 (MQ=60)
CGTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACT < SRR4302543.2938057/94‑1 (MQ=60)
GTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTG < SRR4302543.6332801/94‑1 (MQ=60)
GTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTG < SRR4302543.1240630/94‑1 (MQ=60)
GTTCACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTG < SRR4302543.4289228/94‑1 (MQ=60)
ACCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCA < SRR4302543.4953023/94‑1 (MQ=60)
CCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCAC < SRR4302543.4404073/94‑1 (MQ=60)
CCGTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCAC < SRR4302543.4404072/94‑1 (MQ=60)
GTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTT > SRR4302543.117667/1‑94 (MQ=60)
GTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTT > SRR4302543.6130525/1‑94 (MQ=60)
GTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTT > SRR4302543.5809437/1‑94 (MQ=60)
GTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTT > SRR4302543.5688494/1‑94 (MQ=60)
GTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTT < SRR4302543.4860050/94‑1 (MQ=60)
GTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGGTACCGAAACTGGTCACTT > SRR4302543.333839/1‑94 (MQ=60)
GTCAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGATACCGAAACTGGTCACTT > SRR4302543.1320013/1‑94 (MQ=60)
CAGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCT > SRR4302543.7126153/1‑94 (MQ=60)
AGCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTC < SRR4302543.4922703/94‑1 (MQ=60)
GCCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCT < SRR4302543.125938/94‑1 (MQ=60)
CCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTT < SRR4302543.201124/94‑1 (MQ=60)
CCCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTT < SRR4302543.4760264/94‑1 (MQ=60)
CCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTG > SRR4302543.6778906/1‑94 (MQ=60)
CCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTG > SRR4302543.4613302/1‑94 (MQ=60)
CCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTG < SRR4302543.5035227/94‑1 (MQ=60)
CCGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTG < SRR4302543.21248/94‑1 (MQ=60)
CGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTTGTGGTCATTTACAAGCGGGGTTACCGAAACTCGTCACTTCTCTTGA > SRR4302543.2257482/1‑94 (MQ=60)
CGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGA < SRR4302543.4915454/94‑1 (MQ=60)
CGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGA > SRR4302543.7754570/1‑94 (MQ=60)
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TTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGA > NC_000913/2977761‑2977947
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
