Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,987,057	A→G	Q178Q (CAA→CAG)	yqeI →	putative sensory transducer

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,987,057	0	A	G	100.0%	688.9 / NA	214	Q178Q (CAA→CAG)	yqeI	putative sensory transducer
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (93/121); total (93/121)

Only 100 of 218 total aligned reads displayed.

AATCCTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAACCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGTTGAA  >  NC_000913/2986967‑2987146

aaTCCTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGcc                                                                                         <  1:639979/93‑1 (MQ=255)

aaTCCTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGcc                                                                                         <  1:4565332/93‑1 (MQ=255)

  tCCTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGa                                                                                       >  2:3727357/1‑93 (MQ=255)

   ccTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGaa                                                                                      >  1:2381060/1‑93 (MQ=255)

   ccTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGaa                                                                                      <  2:4379920/93‑1 (MQ=255)

   ccTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGaa                                                                                      <  2:3401704/93‑1 (MQ=255)

    cTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAg                                                                                     >  1:3054125/1‑93 (MQ=255)

       aagcATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCa                                                                                  <  1:4124746/90‑1 (MQ=255)

       aaaCATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCa                                                                                  >  1:1905050/1‑93 (MQ=255)

        aaCATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCAt                                                                                 >  1:2577577/1‑93 (MQ=255)

        aaCATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCAt                                                                                 <  1:2524070/93‑1 (MQ=255)

         aCATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCAtt                                                                                >  2:4123603/1‑93 (MQ=255)

         aCATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCAtt                                                                                <  1:2120092/93‑1 (MQ=255)

            tataAAAAGTTATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCAttttt                                                                             >  2:1257991/1‑93 (MQ=255)

            tataAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCAttttt                                                                             >  1:665834/1‑93 (MQ=255)

               aaaaaGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCaa                                                                          >  1:1588386/1‑93 (MQ=255)

               aaaaaGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCaa                                                                          <  2:3336172/93‑1 (MQ=255)

               aaaaaGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCaa                                                                          <  1:2885903/93‑1 (MQ=255)

                aaaaGTCATCTAATTATGTTGAGCTCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAg                                                                         <  1:4653290/93‑1 (MQ=255)

                  aaGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGa                                                                       >  1:3894042/1‑93 (MQ=255)

                  aaGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGa                                                                       >  2:55838/1‑93 (MQ=255)

                   aGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGAt                                                                      >  1:333175/1‑93 (MQ=255)

                    gTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGCtt                                                                     >  2:1461263/1‑93 (MQ=255)

                     tCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCTTATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTa                                                                    <  1:828094/93‑1 (MQ=255)

                     tCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTa                                                                    <  1:2085025/93‑1 (MQ=255)

                      cATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTAc                                                                   >  1:2585404/1‑93 (MQ=255)

                      cATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTAc                                                                   >  1:426086/1‑93 (MQ=255)

                       aTCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACa                                                                  >  1:1004983/1‑93 (MQ=255)

                        tCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACaa                                                                 <  2:2364728/93‑1 (MQ=255)

                        tCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACaa                                                                 <  1:1102764/93‑1 (MQ=255)

                        tCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACaa                                                                 >  1:329584/1‑93 (MQ=255)

                           aaTTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGAc                                                              <  1:118307/93‑1 (MQ=255)

                           aaTTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGAc                                                              >  1:2467859/1‑93 (MQ=255)

                           aaTTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGAc                                                              <  1:2654987/93‑1 (MQ=255)

                              tATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGt                                                           <  2:3306020/93‑1 (MQ=255)

                              tATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGt                                                           >  2:1535305/1‑93 (MQ=255)

                                tGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTg                                                         >  2:3029098/1‑93 (MQ=255)

                                 gTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGc                                                        <  2:820140/93‑1 (MQ=255)

                                 gTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGc                                                        <  2:2750743/93‑1 (MQ=255)

                                 gTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGc                                                        >  2:1781696/1‑93 (MQ=255)

                                   tGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCgg                                                      >  2:3697024/1‑93 (MQ=255)

                                     aGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGaa                                                    >  1:1675121/1‑93 (MQ=255)

                                     aGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGaa                                                    >  2:2170847/1‑93 (MQ=255)

                                      gcgcATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGaaa                                                   <  2:4607605/93‑1 (MQ=255)

                                       cgcATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAAt                                                  <  2:862572/93‑1 (MQ=255)

                                       cgcATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAAt                                                  <  2:1095233/93‑1 (MQ=255)

                                         cATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTa                                                >  1:1485194/1‑93 (MQ=255)

                                         cATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTa                                                >  2:4489580/1‑93 (MQ=255)

                                          aTTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTaa                                               >  2:4183139/1‑93 (MQ=255)

                                          aTTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTaa                                               >  1:307093/1‑93 (MQ=255)

                                            ttGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATg                                             <  1:4426868/93‑1 (MQ=255)

                                                cATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTg                                         <  1:2015578/93‑1 (MQ=255)

                                                cATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTg                                         >  1:3704397/1‑93 (MQ=255)

                                                 aTAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGc                                        <  1:1832332/93‑1 (MQ=255)

                                                 aTAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGc                                        <  1:4007437/93‑1 (MQ=255)

                                                   aGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCa                                      <  1:3017725/93‑1 (MQ=255)

                                                     gtgcATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCAtt                                    <  2:4542753/91‑1 (MQ=255)

                                                     gcgcATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCAtt                                    >  1:1286137/1‑93 (MQ=255)

                                                      cgcATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCAttt                                   <  2:3501489/93‑1 (MQ=255)

                                                       gcATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCAtttt                                  >  2:162868/1‑93 (MQ=255)

                                                       gcATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCAtttt                                  <  1:871597/93‑1 (MQ=255)

                                                          tatTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAAt                               >  1:3592526/1‑93 (MQ=255)

                                                            ttCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTTCAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGt                             >  1:429865/1‑93 (MQ=255)

                                                            ttCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGt                             <  2:741609/93‑1 (MQ=255)

                                                            ttCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGt                             <  2:2874628/93‑1 (MQ=255)

                                                            ttCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGt                             >  1:4492854/1‑93 (MQ=255)

                                                              cTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTaa                           >  2:2628040/1‑93 (MQ=255)

                                                               tGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAAc                          >  1:2547024/1‑93 (MQ=255)

                                                               tGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAAc                          <  2:1983311/93‑1 (MQ=255)

                                                                gCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACa                         <  2:3923471/93‑1 (MQ=255)

                                                                  atatTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACaga                       <  2:3620459/93‑1 (MQ=255)

                                                                   tatTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACagaa                      >  1:4229059/1‑93 (MQ=255)

                                                                     ttGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACagaaga                    <  1:178650/93‑1 (MQ=255)

                                                                     ttGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACagaaga                    >  2:2894338/1‑93 (MQ=255)

                                                                      tGGCTATGCAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGAt                   <  2:2995559/93‑1 (MQ=255)

                                                                       ggCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATa                  <  2:1402369/93‑1 (MQ=255)

                                                                       ggCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATa                  <  1:2891764/93‑1 (MQ=255)

                                                                        gCTATGTAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATAc                 <  2:3849785/93‑1 (MQ=255)

                                                                        gCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATAc                 <  1:1795635/93‑1 (MQ=255)

                                                                          tATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACaa               <  1:3203308/93‑1 (MQ=255)

                                                                          tATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACaa               <  1:2843147/93‑1 (MQ=255)

                                                                            tGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAAtt             <  2:1916474/93‑1 (MQ=255)

                                                                            tGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAAtt             <  2:28339/93‑1 (MQ=255)

                                                                              gAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGa           >  2:3214062/1‑93 (MQ=255)

                                                                              gAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGa           >  1:278939/1‑93 (MQ=255)

                                                                              gAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGa           <  2:2946340/93‑1 (MQ=255)

                                                                               aataataatCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGAt          >  2:3114316/1‑93 (MQ=255)

                                                                                ataataatCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATg         >  2:1051590/1‑93 (MQ=255)

                                                                                 taataatCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATgg        <  1:1413626/93‑1 (MQ=255)

                                                                                 taataatCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATgg        <  2:3062328/93‑1 (MQ=255)

                                                                                 taataatCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATgg        <  2:500864/93‑1 (MQ=255)

                                                                                 taataatCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATgg        <  1:1173199/93‑1 (MQ=255)

                                                                                 taataatCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATgg        <  1:2228983/93‑1 (MQ=255)

                                                                                  aataatCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATggg       <  1:973026/93‑1 (MQ=255)

                                                                                   ataatCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGt      >  2:2239392/1‑93 (MQ=255)

                                                                                   ataatCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGt      >  2:1162693/1‑93 (MQ=255)

                                                                                    taatCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGtt     <  2:380151/93‑1 (MQ=255)

                                                                                    taatCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGtt     <  2:1549551/93‑1 (MQ=255)

                                                                                    taatCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGtt     >  1:378399/1‑93 (MQ=255)

                                                                                      atCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGTTGa   >  1:4102656/1‑93 (MQ=255)

AATCCTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAACCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGTTGAA  >  NC_000913/2986967‑2987146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAAAATCCTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAACCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGTTGAAAGAG  >  NC_000913/2986964‑2987150

CAAAATCCTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAG                                                                                               <  SRR4302535.2505219/94‑1 (MQ=60)

CAAAATCCTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAG                                                                                               <  SRR4302535.1260102/94‑1 (MQ=60)

 AAAATCCTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGC                                                                                              <  SRR4302535.701861/94‑1 (MQ=60)

   AATCCTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCG                                                                                            <  SRR4302535.4596480/94‑1 (MQ=60)

   AATCCTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCG                                                                                            <  SRR4302535.644451/94‑1 (MQ=60)

     TCCTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAA                                                                                          >  SRR4302535.2398159/1‑94 (MQ=60)

      CCTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAG                                                                                         >  SRR4302535.3075506/1‑94 (MQ=60)

         CAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCA                                                                                      >  SRR4302535.1918761/1‑94 (MQ=60)

          AAGCATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCAT                                                                                     <  SRR4302535.4152974/94‑1 (MQ=60)

          AAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCAT                                                                                     >  SRR4302535.1173648/1‑94 (MQ=60)

          AAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCAT                                                                                     >  SRR4302535.2596098/1‑94 (MQ=60)

          AAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCAT                                                                                     <  SRR4302535.181170/94‑1 (MQ=60)

           AACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATT                                                                                    <  SRR4302535.2542258/94‑1 (MQ=60)

           AACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATT                                                                                    >  SRR4302535.2084313/1‑94 (MQ=60)

           AACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATT                                                                                    >  SRR4302535.1870296/1‑94 (MQ=60)

            ACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTT                                                                                   <  SRR4302535.2135383/94‑1 (MQ=60)

              ATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTT                                                                                 >  SRR4302535.670478/1‑94 (MQ=60)

               TATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTC                                                                                <  SRR4302535.2615965/94‑1 (MQ=60)

                 TAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAA                                                                              >  SRR4302535.1599851/1‑94 (MQ=60)

                  AAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAG                                                                             <  SRR4302535.2906322/94‑1 (MQ=60)

                  AAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAG                                                                             <  SRR4302535.3650365/94‑1 (MQ=60)

                   AAAAGTCATCTAATTATGTTGAGCTCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGG                                                                            <  SRR4302535.4684794/94‑1 (MQ=60)

                   AAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGG                                                                            <  SRR4302535.2225192/94‑1 (MQ=60)

                   AAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGG                                                                            >  SRR4302535.3351607/1‑94 (MQ=60)

                   AAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGG                                                                            >  SRR4302535.3598804/1‑94 (MQ=60)

                    AAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGA                                                                           >  SRR4302535.3920733/1‑94 (MQ=60)

                     AAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGAT                                                                          >  SRR4302535.335482/1‑94 (MQ=60)

                      AGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATT                                                                         >  SRR4302535.659814/1‑94 (MQ=60)

                      AGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATT                                                                         >  SRR4302535.4208674/1‑94 (MQ=60)

                       GTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTA                                                                        <  SRR4302535.3066900/94‑1 (MQ=60)

                        TCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCTTATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTAC                                                                       <  SRR4302535.833892/94‑1 (MQ=60)

                        TCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTAC                                                                       >  SRR4302535.2603972/1‑94 (MQ=60)

                        TCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTAC                                                                       <  SRR4302535.2100042/94‑1 (MQ=60)

                        TCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTAC                                                                       >  SRR4302535.429055/1‑94 (MQ=60)

                         CATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACA                                                                      >  SRR4302535.1012125/1‑94 (MQ=60)

                          ATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAA                                                                     <  SRR4302535.4487127/94‑1 (MQ=60)

                          ATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAA                                                                     >  SRR4302535.3891376/1‑94 (MQ=60)

                          ATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAA                                                                     >  SRR4302535.331869/1‑94 (MQ=60)

                           TCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAG                                                                    <  SRR4302535.1110644/94‑1 (MQ=60)

                           TCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAG                                                                    <  SRR4302535.2515949/94‑1 (MQ=60)

                           TCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAG                                                                    <  SRR4302535.1737897/94‑1 (MQ=60)

                            CTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGA                                                                   >  SRR4302535.2598263/1‑94 (MQ=60)

                            CTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGA                                                                   >  SRR4302535.2456896/1‑94 (MQ=60)

                             TAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGAC                                                                  >  SRR4302535.2485650/1‑94 (MQ=60)

                             TAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGAC                                                                  >  SRR4302535.4148005/1‑94 (MQ=60)

                              AATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACT                                                                 <  SRR4302535.2674011/94‑1 (MQ=60)

                              AATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACT                                                                 <  SRR4302535.119137/94‑1 (MQ=60)

                               ATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTG                                                                <  SRR4302535.1661324/94‑1 (MQ=60)

                               ATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTG                                                                >  SRR4302535.1198934/1‑94 (MQ=60)

                               ATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTG                                                                <  SRR4302535.2651167/94‑1 (MQ=60)

                                TTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGT                                                               <  SRR4302535.1543522/94‑1 (MQ=60)

                                 TATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTT                                                              <  SRR4302535.4287822/94‑1 (MQ=60)

                                 TATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTT                                                              <  SRR4302535.2586840/94‑1 (MQ=60)

                                  ATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTG                                                             >  SRR4302535.964205/1‑94 (MQ=60)

                                  ATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTG                                                             <  SRR4302535.2268953/94‑1 (MQ=60)

                                   TGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGC                                                            >  SRR4302535.118441/1‑94 (MQ=60)

                                   TGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGC                                                            <  SRR4302535.2127248/94‑1 (MQ=60)

                                    GTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCG                                                           <  SRR4302535.4311045/94‑1 (MQ=60)

                                       GAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAA                                                        >  SRR4302535.1687248/1‑94 (MQ=60)

                                         GCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAAT                                                      <  SRR4302535.3989691/94‑1 (MQ=60)

                                          CGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATT                                                     <  SRR4302535.607352/94‑1 (MQ=60)

                                           GCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTA                                                    >  SRR4302535.1495824/1‑94 (MQ=60)

                                           GCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTA                                                    >  SRR4302535.743487/1‑94 (MQ=60)

                                            CATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAA                                                   >  SRR4302535.309217/1‑94 (MQ=60)

                                            CATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAA                                                   <  SRR4302535.3259586/94‑1 (MQ=60)

                                             ATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAAT                                                  <  SRR4302535.1807106/94‑1 (MQ=60)

                                              TTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATG                                                 <  SRR4302535.865094/94‑1 (MQ=60)

                                               TTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGG                                                <  SRR4302535.4457193/94‑1 (MQ=60)

                                                TGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGC                                               <  SRR4302535.2867264/94‑1 (MQ=60)

                                                TGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGC                                               >  SRR4302535.1456046/1‑94 (MQ=60)

                                                  TCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTG                                             >  SRR4302535.3730051/1‑94 (MQ=60)

                                                   CATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGC                                            <  SRR4302535.2030101/94‑1 (MQ=60)

                                                    ATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCC                                           <  SRR4302535.4034855/94‑1 (MQ=60)

                                                    ATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCC                                           <  SRR4302535.1845554/94‑1 (MQ=60)

                                                      AGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCAT                                         <  SRR4302535.3038865/94‑1 (MQ=60)

                                                       GGCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATT                                        >  SRR4302535.1295304/1‑94 (MQ=60)

                                                        GCGCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTT                                       <  SRR4302535.2705961/94‑1 (MQ=60)

                                                          GCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTA                                     >  SRR4302535.755584/1‑94 (MQ=60)

                                                          GCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTA                                     <  SRR4302535.877773/94‑1 (MQ=60)

                                                          GCATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTA                                     <  SRR4302535.4536615/94‑1 (MQ=60)

                                                           CATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTCA                                    >  SRR4302535.4361102/1‑94 (MQ=60)

                                                            ATATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAAT                                   >  SRR4302535.3617442/1‑94 (MQ=60)

                                                             TATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATG                                  >  SRR4302535.1034605/1‑94 (MQ=60)

                                                              ATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTTCAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGT                                 >  SRR4302535.432856/1‑94 (MQ=60)

                                                              ATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGT                                 <  SRR4302535.3730263/94‑1 (MQ=60)

                                                              ATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGT                                 >  SRR4302535.4523693/1‑94 (MQ=60)

                                                              ATTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGT                                 >  SRR4302535.4476132/1‑94 (MQ=60)

                                                               TTCTGCATATTTGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTA                                <  SRR4302535.4128345/94‑1 (MQ=60)

                                                               TTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTA                                >  SRR4302535.98094/1‑94 (MQ=60)

                                                               TTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTA                                <  SRR4302535.201777/94‑1 (MQ=60)

                                                               TTCTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTA                                >  SRR4302535.3077854/1‑94 (MQ=60)

                                                                 CTGCATATTGGCTATGGAATAATAATCCGCCTAAGCCATTTTTCAAGGCTTACAAGACTGTTACGGACATTCATGGCTGCCATTTTAATGTAAC                              >  SRR4302535.2565349/1‑94 (MQ=60)

                                                                 CTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAAC                              <  SRR4302535.4064126/94‑1 (MQ=60)

                                                                 CTGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAAC                              >  SRR4302535.2565350/1‑94 (MQ=60)

                                                                  TGCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACA                             <  SRR4302535.2981489/94‑1 (MQ=60)

                                                                   GCATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAG                            <  SRR4302535.2344242/94‑1 (MQ=60)

                                                                     ATATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAA                          >  SRR4302535.4258003/1‑94 (MQ=60)

                                                                       ATTGGCTATGTAATAATAATCAGCCGAAGCCATTTTTCAAGGATCACAAGCCTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGA                        <  SRR4302535.1363797/94‑1 (MQ=60)

                                                                       ATTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGA                        >  SRR4302535.2906809/1‑94 (MQ=60)

                                                                        TTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGAT                       <  SRR4302535.179890/94‑1 (MQ=60)

                                                                        TTGGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGAT                       <  SRR4302535.1908351/94‑1 (MQ=60)

                                                                          GGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATAC                     <  SRR4302535.2912222/94‑1 (MQ=60)

                                                                          GGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATAC                     <  SRR4302535.2918631/94‑1 (MQ=60)

                                                                          GGCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATAC                     <  SRR4302535.465922/94‑1 (MQ=60)

                                                                           GCTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACA                    <  SRR4302535.1808617/94‑1 (MQ=60)

                                                                            CTATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAA                   >  SRR4302535.3468770/1‑94 (MQ=60)

                                                                             TATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAAT                  <  SRR4302535.3225489/94‑1 (MQ=60)

                                                                             TATGGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAAT                  <  SRR4302535.2863307/94‑1 (MQ=60)

                                                                                GGAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGA               >  SRR4302535.280882/1‑94 (MQ=60)

                                                                                 GAATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGAT              >  SRR4302535.1429466/1‑94 (MQ=60)

                                                                                  AATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATG             >  SRR4302535.3141567/1‑94 (MQ=60)

                                                                                   ATAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGG            <  SRR4302535.2830059/94‑1 (MQ=60)

                                                                                    TAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGG           <  SRR4302535.1181576/94‑1 (MQ=60)

                                                                                    TAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGG           <  SRR4302535.2244835/94‑1 (MQ=60)

                                                                                    TAATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGG           <  SRR4302535.1423717/94‑1 (MQ=60)

                                                                                     AATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGT          <  SRR4302535.979930/94‑1 (MQ=60)

                                                                                      ATAATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGTT         >  SRR4302535.381020/1‑94 (MQ=60)

                                                                                        AATCAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGTTGA       >  SRR4302535.4130746/1‑94 (MQ=60)

                                                                                           CAGCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGTTGAAAG    <  SRR4302535.1544673/94‑1 (MQ=60)

                                                                                             GCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGTTGAAAGAG  <  SRR4302535.2297589/94‑1 (MQ=60)

                                                                                             GCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGTTGAAAGAG  <  SRR4302535.253623/94‑1 (MQ=60)

                                                                                             GCCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGTTGAAAGAG  <  SRR4302535.3011764/94‑1 (MQ=60)

CAAAATCCTCAAACATATAAAAAGTCATCTAATTATGTTGAGCGCATTTGTCATAGGCGCATATTCTGCATATTGGCTATGGAATAATAATCAACCGAAGCCATTTTTCAAGGATTACAAGACTGTTGCGGAAATTAATGGCTGCCATTTTAATGTAACAGAAGATACAATTGATGGGTTGAAAGAG  >  NC_000913/2986964‑2987150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`