Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,011,893 G→A A123V (GCG→GTG)  b2875 ← putative synthases

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,011,8930GA100.0% 584.9 / NA 169A123V (GCG→GTG) b2875putative synthases
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (91/78);  total (91/78)

Only 100 of 176 total aligned reads displayed.

GCATGGAGAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGAC  >  NC_000913/3011803‑3011982
                                                                                          |                                                                                         
  aTGGAGAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGcaccgc                                                                                       <  2:1790818/93‑1 (MQ=255)
   tGGAGAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCa                                                                                      <  2:2655296/93‑1 (MQ=255)
   tGGAGAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCa                                                                                      >  2:4570904/1‑93 (MQ=255)
     gagaAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCAct                                                                                    >  2:1678689/1‑93 (MQ=255)
       gaAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCActct                                                                                  <  1:2636079/93‑1 (MQ=255)
        aaGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTg                                                                                 <  1:4634225/93‑1 (MQ=255)
        aaGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTg                                                                                 >  1:4082924/1‑93 (MQ=255)
         aGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTgg                                                                                <  1:4225060/93‑1 (MQ=255)
           cGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGc                                                                              <  2:1912633/93‑1 (MQ=255)
           cGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGc                                                                              <  2:2090633/93‑1 (MQ=255)
             tGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTa                                                                            <  2:4081848/93‑1 (MQ=255)
             tGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTa                                                                            >  2:2813768/1‑93 (MQ=255)
              ggTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTAt                                                                           <  1:130340/93‑1 (MQ=255)
              ggTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTAt                                                                           >  2:1494089/1‑93 (MQ=255)
                  gATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGcc                                                                       <  2:3975684/93‑1 (MQ=255)
                  gATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGcc                                                                       >  1:2989208/1‑93 (MQ=255)
                  gATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGcc                                                                       >  1:3456922/1‑93 (MQ=255)
                   aTGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGccc                                                                      >  1:3916770/1‑93 (MQ=255)
                      gtggGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGt                                                                   <  1:4526282/93‑1 (MQ=255)
                       tggGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGtt                                                                  >  1:2708954/1‑93 (MQ=255)
                         ggAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGa                                                                <  2:3211949/93‑1 (MQ=255)
                          gAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGAc                                                               <  2:688276/93‑1 (MQ=255)
                           aaTAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACa                                                              >  2:3288520/1‑93 (MQ=255)
                           aaTAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACa                                                              <  1:2305643/93‑1 (MQ=255)
                            aTAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACAt                                                             <  2:2324628/93‑1 (MQ=255)
                            aTAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACAt                                                             <  1:3837518/93‑1 (MQ=255)
                            aTAGTCCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACAt                                                             >  2:2143063/1‑93 (MQ=255)
                              aGTTCAGGATTGAGGCTTTCGCGATAAAGATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGc                                                           <  1:1664260/93‑1 (MQ=255)
                                ttCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGccc                                                         <  2:548142/93‑1 (MQ=255)
                                  cAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGAAATGCCCcg                                                       <  2:4553488/93‑1 (MQ=255)
                                   aGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCGTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCcgc                                                      >  2:1538831/1‑93 (MQ=255)
                                    ggATTGAGGCTTTCGCGATAAATATCAGCAAGGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGACCcgcg                                                     >  2:3054677/1‑93 (MQ=255)
                                    ggATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCcgcg                                                     >  1:2266553/1‑93 (MQ=255)
                                    ggATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCcgcg                                                     >  1:4026001/1‑93 (MQ=255)
                                     gATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCgcgc                                                    <  2:812060/93‑1 (MQ=255)
                                     gATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCgcgc                                                    <  2:600719/93‑1 (MQ=255)
                                     gATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCgcgc                                                    >  2:912771/1‑93 (MQ=255)
                                     gATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCgcgc                                                    >  1:334132/1‑93 (MQ=255)
                                       ttGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCa                                                  >  2:736003/1‑93 (MQ=255)
                                       ttGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCa                                                  >  1:2311786/1‑93 (MQ=255)
                                          aGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATc                                               >  2:646547/1‑93 (MQ=255)
                                              tttCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAaca                                           <  1:25603/93‑1 (MQ=255)
                                               ttCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAacac                                          <  1:1183999/93‑1 (MQ=255)
                                               ttCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAacac                                          <  2:4332956/93‑1 (MQ=255)
                                               ttCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAacac                                          <  2:2581609/93‑1 (MQ=255)
                                                tCGCTATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACAcc                                         <  2:3400492/93‑1 (MQ=255)
                                                 cgcgATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCa                                        <  1:725246/93‑1 (MQ=255)
                                                  gcgATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAg                                       >  2:2707218/1‑93 (MQ=255)
                                                  gcgATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAg                                       >  2:3772696/1‑93 (MQ=255)
                                                   cgATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGa                                      >  1:4309533/1‑93 (MQ=255)
                                                   cgATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGa                                      >  1:845867/1‑93 (MQ=255)
                                                    gATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGAc                                     >  2:4437516/1‑93 (MQ=255)
                                                    gATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGAc                                     >  1:2105781/1‑93 (MQ=255)
                                                     aTAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGaag                                    >  2:2293550/1‑91 (MQ=255)
                                                     aTAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACg                                    >  2:4256707/1‑93 (MQ=255)
                                                      tAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGt                                   >  2:1314240/1‑93 (MQ=255)
                                                      tAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGt                                   >  1:1865533/1‑93 (MQ=255)
                                                       aaaTATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTg                                  <  1:2887103/93‑1 (MQ=255)
                                                       aaaTATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTg                                  >  1:3144180/1‑93 (MQ=255)
                                                        aaTATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTgg                                 >  1:1886346/1‑93 (MQ=255)
                                                         atatCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGa                                <  1:280201/93‑1 (MQ=255)
                                                            tCAGCAACGGCAATATGAAATCCTAATACCACCGCACTCTCGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGc                             >  1:2460655/1‑93 (MQ=255)
                                                             cAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCa                            <  2:348526/93‑1 (MQ=255)
                                                             cAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGGGGACGCa                            <  1:1345946/93‑1 (MQ=255)
                                                              aGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCAt                           >  2:4468127/1‑93 (MQ=255)
                                                                 aaCGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATAcc                        >  2:1620223/1‑93 (MQ=255)
                                                                 aaCGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATAcc                        >  2:3270608/1‑93 (MQ=255)
                                                                 aaCGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATAcc                        >  1:3594647/1‑93 (MQ=255)
                                                                   cGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCACCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCAt                      >  1:3856281/1‑93 (MQ=255)
                                                                    ggCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATg                     >  2:1724171/1‑93 (MQ=255)
                                                                     gCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATgg                    >  2:2963122/1‑93 (MQ=255)
                                                                     gCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATgg                    <  1:3536191/93‑1 (MQ=255)
                                                                     gCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATAACATgg                    >  2:2058605/1‑93 (MQ=255)
                                                                      cAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGa                   <  2:4434820/93‑1 (MQ=255)
                                                                       aaTATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGAc                  <  2:4393366/93‑1 (MQ=255)
                                                                        atatCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGAGGCATACCATGGACg                 >  1:1193768/1‑93 (MQ=255)
                                                                        atatCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACg                 >  1:977566/1‑93 (MQ=255)
                                                                        atatCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACg                 <  1:1743871/93‑1 (MQ=255)
                                                                         tatCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCATCACCAGACGTGGACGCATACCATGGACGc                <  2:806652/93‑1 (MQ=255)
                                                                         tatCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGc                <  2:480982/93‑1 (MQ=255)
                                                                            cAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGa             <  1:1989270/93‑1 (MQ=255)
                                                                            cAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATACCCCGCGCCAATCAACACCAGACGTGGACGGATACCATGGACGCTgg             >  1:3463904/1‑92 (MQ=255)
                                                                             aaaTCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGAt            >  2:1558468/1‑93 (MQ=255)
                                                                              aaTCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATa           <  2:3722269/93‑1 (MQ=255)
                                                                               aTCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAGTCAACACCAGACGTGGACGCATACCATGGACGCTGATaa          <  1:1683608/93‑1 (MQ=255)
                                                                               aTCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGAtca          >  2:710640/1‑91 (MQ=255)
                                                                                tCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATaaa         <  2:1127849/93‑1 (MQ=255)
                                                                                tCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATaaa         <  2:2381114/93‑1 (MQ=255)
                                                                                  cTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATa       >  2:1280591/1‑93 (MQ=255)
                                                                                  cTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATa       >  1:3319507/1‑93 (MQ=255)
                                                                                   tAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATAc      >  1:68183/1‑93 (MQ=255)
                                                                                   tAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATAc      >  2:3814145/1‑93 (MQ=255)
                                                                                   tAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATAc      >  2:1459714/1‑93 (MQ=255)
                                                                                    aaTAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACt     <  2:1179621/93‑1 (MQ=255)
                                                                                    aaTAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACt     <  1:2599562/93‑1 (MQ=255)
                                                                                    aaTAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACt     <  1:4515477/93‑1 (MQ=255)
                                                                                    aaTAGCACCGCACTCAGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACt     <  1:435967/93‑1 (MQ=255)
                                                                                      tAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGa   <  1:512433/93‑1 (MQ=255)
                                                                                      tAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGa   >  2:2657552/1‑93 (MQ=255)
                                                                                       aGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGAc  >  2:2193235/1‑93 (MQ=255)
                                                                                          |                                                                                         
GCATGGAGAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGAC  >  NC_000913/3011803‑3011982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCAGCATGGAGAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTG  >  NC_000913/3011800‑3011986
                                                                                             |                                                                                             
TCAGCATGGAGAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCA                                                                                               <  SRR4302535.1920739/94‑1 (MQ=60)
TCAGCATGGAGAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCA                                                                                               >  SRR4302535.4169298/1‑94 (MQ=60)
TCAGCATGGAGAAGCGT‑GTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCAC                                                                                              <  SRR4302535.359515/94‑1 (MQ=60)
 CAGCATGGAGAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCAC                                                                                              <  SRR4302535.1507729/94‑1 (MQ=60)
 CAGCATGGAGAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCAC                                                                                              <  SRR4302535.4253554/94‑1 (MQ=60)
    CATGGAGAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGC                                                                                           <  SRR4302535.2599476/94‑1 (MQ=60)
         AGAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCT                                                                                      >  SRR4302535.1715580/1‑94 (MQ=60)
          GAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTG                                                                                     <  SRR4302535.2654966/94‑1 (MQ=60)
          GAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTG                                                                                     >  SRR4302535.4110849/1‑94 (MQ=60)
          GAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTG                                                                                     <  SRR4302535.4283983/94‑1 (MQ=60)
           AAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGG                                                                                    <  SRR4302535.4665660/94‑1 (MQ=60)
           AAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGG                                                                                    <  SRR4302535.4663469/94‑1 (MQ=60)
            AGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGG                                                                                   <  SRR4302535.4253968/94‑1 (MQ=60)
                TGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTAT                                                                               <  SRR4302535.4363957/94‑1 (MQ=60)
                TGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTAT                                                                               <  SRR4302535.3584884/94‑1 (MQ=60)
                 GGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATC                                                                              <  SRR4302535.131256/94‑1 (MQ=60)
                 GGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATC                                                                              <  SRR4302535.240483/94‑1 (MQ=60)
                  GTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCG                                                                             <  SRR4302535.2780391/94‑1 (MQ=60)
                  GTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCG                                                                             >  SRR4302535.3980994/1‑94 (MQ=60)
                   TTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGC                                                                            <  SRR4302535.1438727/94‑1 (MQ=60)
                    TGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCC                                                                           >  SRR4302535.3010165/1‑94 (MQ=60)
                    TGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCC                                                                           >  SRR4302535.3480952/1‑94 (MQ=60)
                     GATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCC                                                                          >  SRR4302535.3943572/1‑94 (MQ=60)
                         GTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTT                                                                      >  SRR4302535.2728315/1‑94 (MQ=60)
                         GTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTT                                                                      <  SRR4302535.4557288/94‑1 (MQ=60)
                          TGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTG                                                                     <  SRR4302535.2893174/94‑1 (MQ=60)
                            GGGATAGTGCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGAC                                                                   <  SRR4302535.185987/94‑1 (MQ=60)
                              AATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACAT                                                                 <  SRR4302535.2322134/94‑1 (MQ=60)
                               ATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATG                                                                <  SRR4302535.3863973/94‑1 (MQ=60)
                                 AGTTCAGGATTGAGGCTTTCGCGATAAAGATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCC                                                              <  SRR4302535.1676286/94‑1 (MQ=60)
                                  GTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCC                                                             >  SRR4302535.3232139/1‑94 (MQ=60)
                                  GTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCC                                                             <  SRR4302535.96621/94‑1 (MQ=60)
                                      AGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCG                                                         <  SRR4302535.3552578/94‑1 (MQ=60)
                                      AGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCG                                                         >  SRR4302535.4053546/1‑94 (MQ=60)
                                      AGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCG                                                         >  SRR4302535.2282707/1‑94 (MQ=60)
                                       GGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGC                                                        <  SRR4302535.2299136/94‑1 (MQ=60)
                                       GGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGC                                                        >  SRR4302535.336443/1‑94 (MQ=60)
                                       GGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGC                                                        >  SRR4302535.336442/1‑94 (MQ=60)
                                         ATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCA                                                      >  SRR4302535.2328335/1‑94 (MQ=60)
                                           TGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAAT                                                    <  SRR4302535.126574/94‑1 (MQ=60)
                                            GAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATC                                                   <  SRR4302535.4091690/94‑1 (MQ=60)
                                            GAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATC                                                   >  SRR4302535.248097/1‑94 (MQ=60)
                                                 TTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACAC                                              <  SRR4302535.3078948/94‑1 (MQ=60)
                                                 TTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACAC                                              <  SRR4302535.25801/94‑1 (MQ=60)
                                                  TTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACC                                             <  SRR4302535.1192457/94‑1 (MQ=60)
                                                   TCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCA                                            >  SRR4302535.2234566/1‑94 (MQ=60)
                                                    CGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAG                                           <  SRR4302535.730336/94‑1 (MQ=60)
                                                    CGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAG                                           <  SRR4302535.564126/94‑1 (MQ=60)
                                                     GCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGA                                          >  SRR4302535.851806/1‑94 (MQ=60)
                                                     GCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGA                                          >  SRR4302535.4339015/1‑94 (MQ=60)
                                                      CGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGAC                                         >  SRR4302535.344334/1‑94 (MQ=60)
                                                      CGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGAC                                         >  SRR4302535.2120971/1‑94 (MQ=60)
                                                        ATAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGT                                       >  SRR4302535.1878979/1‑94 (MQ=60)
                                                         TAAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTG                                      >  SRR4302535.3166049/1‑94 (MQ=60)
                                                          AAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGG                                     <  SRR4302535.2907529/94‑1 (MQ=60)
                                                          AAATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGG                                     >  SRR4302535.1899935/1‑94 (MQ=60)
                                                            ATATCAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGAC                                   <  SRR4302535.282154/94‑1 (MQ=60)
                                                              ATCAGCAACGGCAATATGAAATCCTAATACCACCGCACTCTCGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGC                                 >  SRR4302535.2478395/1‑94 (MQ=60)
                                                                CAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCAT                               <  SRR4302535.1315287/94‑1 (MQ=60)
                                                                CAGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGGGGACGCAT                               <  SRR4302535.1355556/94‑1 (MQ=60)
                                                                 AGCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATA                              <  SRR4302535.4495344/94‑1 (MQ=60)
                                                                  GCAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCCCCAATCAACACCAGACGTGGACGCATAC                             <  SRR4302535.1885987/94‑1 (MQ=60)
                                                                   CAACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACC                            >  SRR4302535.3619592/1‑94 (MQ=60)
                                                                     ACGGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCACCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCAT                          >  SRR4302535.3882833/1‑94 (MQ=60)
                                                                       GGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGG                        <  SRR4302535.391373/94‑1 (MQ=60)
                                                                       GGCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGG                        >  SRR4302535.782937/1‑94 (MQ=60)
                                                                        GCAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGA                       <  SRR4302535.3560738/94‑1 (MQ=60)
                                                                         CAATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGAC                      >  SRR4302535.4711781/1‑94 (MQ=60)
                                                                          AATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGAGGCATACCATGGACG                     >  SRR4302535.1202321/1‑94 (MQ=60)
                                                                          AATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACG                     >  SRR4302535.984512/1‑94 (MQ=60)
                                                                           ATATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGC                    <  SRR4302535.1756488/94‑1 (MQ=60)
                                                                            TATCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCT                   >  SRR4302535.265466/1‑94 (MQ=60)
                                                                              TCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGA                 >  SRR4302535.2066871/1‑94 (MQ=60)
                                                                              TCAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATACCCCGCGCCAATCAACACCAGACGTGGACGGATACCATGGACGCTGG                 >  SRR4302535.3487980/1‑94 (MQ=60)
                                                                               CAAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGAT                <  SRR4302535.2003594/94‑1 (MQ=60)
                                                                                AAATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATA               >  SRR4302535.3741705/1‑94 (MQ=60)
                                                                                  ATCCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAGTCAACACCAGACGTGGACGCATACCATGGACGCTGATAAA             <  SRR4302535.1695802/94‑1 (MQ=60)
                                                                                    CCTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATA           >  SRR4302535.3342603/1‑94 (MQ=60)
                                                                                     CTAATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATAC          >  SRR4302535.68688/1‑94 (MQ=60)
                                                                                       AATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTG        <  SRR4302535.4546436/94‑1 (MQ=60)
                                                                                       AATAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTG        <  SRR4302535.2618224/94‑1 (MQ=60)
                                                                                       AATAGCACCGCACTCAGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTG        <  SRR4302535.439005/94‑1 (MQ=60)
                                                                                         TAGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGAC      <  SRR4302535.516016/94‑1 (MQ=60)
                                                                                          AGCACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACA     >  SRR4302535.3422894/1‑94 (MQ=60)
                                                                                             ACCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTG  <  SRR4302535.4511124/94‑1 (MQ=60)
                                                                                             |                                                                                             
TCAGCATGGAGAAGCGTGGTTGATGGTGGGAATAGTTCAGGATTGAGGCTTTCGCGATAAATATCAGCAACGGCAATATCAAATCCTAATAGCGCCGCACTCTGGGCTATCGCCCGGTTGACATGCCCCGCGCCAATCAACACCAGACGTGGACGCATACCATGGACGCTGATAAATACTGACATTG  >  NC_000913/3011800‑3011986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑