Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,028,397	A→G	S190S (AGT→AGC)	ygfT ←	putative oxidoreductase Fe‑S subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,028,397	0	A	G	97.7%	637.7 / 1.3	214	S190S (AGT→AGC)	ygfT	putative oxidoreductase Fe‑S subunit
Reads supporting (aligned to +/- strand): ref base A (3/2); new base G (117/92); total (120/94)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01

Only 100 of 218 total aligned reads displayed.

TCGGCACAATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCACTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCTTTTCC  >  NC_000913/3028308‑3028486

tCGGCACAATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTc                                                                                        <  2:3737125/93‑1 (MQ=255)

    cacaATAAACACAGAGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTg                                                                                    >  2:2922025/1‑93 (MQ=255)

      caATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGaa                                                                                  >  2:2187502/1‑93 (MQ=255)

       aaTAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGaaa                                                                                 >  2:1434682/1‑93 (MQ=255)

       aaTAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGaaa                                                                                 >  1:4372221/1‑93 (MQ=255)

        aTAAACACAGCGGTCGCTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAAt                                                                                <  1:763165/93‑1 (MQ=255)

        aTAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAAt                                                                                >  1:3473370/1‑93 (MQ=255)

         tAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAAtt                                                                               >  1:4154301/1‑93 (MQ=255)

         tAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAAtt                                                                               <  2:3005539/93‑1 (MQ=255)

         tAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAAtt                                                                               >  1:2054016/1‑93 (MQ=255)

          aaaCACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAAttt                                                                              <  1:2178957/93‑1 (MQ=255)

            acacAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTa                                                                            >  2:1665297/1‑93 (MQ=255)

              acaGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTAtt                                                                          >  1:564185/1‑92 (MQ=255)

              acaGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATc                                                                          >  2:2723572/1‑93 (MQ=255)

               caGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCt                                                                         <  1:4644331/93‑1 (MQ=255)

                 gctgTCACTCTCATAAGGCGCTTGTGGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTgc                                                                       <  2:1927810/90‑1 (MQ=255)

                 gCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTgc                                                                       <  2:4047615/93‑1 (MQ=255)

                    gTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGcc                                                                    <  2:4236982/93‑1 (MQ=255)

                       aCTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCttt                                                                 >  2:1161049/1‑93 (MQ=255)

                       aCTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCttt                                                                 >  2:2544773/1‑93 (MQ=255)

                        ctctCATAAGTTGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCACTCGCTGAAATTTTATCTGCGCCTTTa                                                                <  1:537375/93‑1 (MQ=255)

                        ctctCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTa                                                                >  1:2317015/1‑93 (MQ=255)

                        ctctCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTa                                                                >  1:4026260/1‑93 (MQ=255)

                        ctctCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTa                                                                <  1:3316340/93‑1 (MQ=255)

                        ctctCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCACTCGCTGAAATTTTATCTGCGCCTTTa                                                                <  1:593718/93‑1 (MQ=255)

                         tctcATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTAc                                                               >  1:4654741/1‑93 (MQ=255)

                         tctcATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTAc                                                               <  2:625306/93‑1 (MQ=255)

                         tctcATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTAc                                                               >  2:1080036/1‑93 (MQ=255)

                          ctcATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTAcg                                                              >  2:2082152/1‑93 (MQ=255)

                          ctcATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTAcg                                                              >  2:4448875/1‑93 (MQ=255)

                          ctcATAAGTCGCTTGTTGGGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTAcg                                                              <  2:45241/93‑1 (MQ=255)

                           tcATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTAcgc                                                             >  1:3547934/1‑93 (MQ=255)

                           tcATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTAcgc                                                             >  1:2764184/1‑93 (MQ=255)

                           tcATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTAcgc                                                             <  2:503200/93‑1 (MQ=255)

                            cATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTAcgcg                                                            >  1:4350636/1‑93 (MQ=255)

                             aTAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGa                                                           <  1:798788/93‑1 (MQ=255)

                             aTAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGGTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGa                                                           >  1:1366458/1‑93 (MQ=255)

                              tAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAg                                                          >  1:3930262/1‑93 (MQ=255)

                               aaGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCACTCGCTGAAATTTTATCTGCGCCTTTACGCGAGt                                                         >  1:2028365/1‑93 (MQ=255)

                                aGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGtt                                                        <  1:1538393/93‑1 (MQ=255)

                                  tCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTaa                                                      <  2:3333916/93‑1 (MQ=255)

                                  tCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTaa                                                      <  1:994287/93‑1 (MQ=255)

                                  tCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTaa                                                      <  1:3461000/93‑1 (MQ=255)

                                     cTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACgg                                                   <  2:1890893/93‑1 (MQ=255)

                                     cTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACgg                                                   <  1:1270433/93‑1 (MQ=255)

                                     cTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACgg                                                   <  1:1934954/93‑1 (MQ=255)

                                     cTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCACTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACgg                                                   >  2:3244756/1‑93 (MQ=255)

                                      ttgttgTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACggg                                                  >  2:1949149/1‑93 (MQ=255)

                                      ttgttgTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACggg                                                  <  2:3866452/93‑1 (MQ=255)

                                       tgttgtGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGGTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACgggg                                                 >  2:4345625/1‑93 (MQ=255)

                                         ttgtGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAg                                               >  1:3294281/1‑93 (MQ=255)

                                           gtgGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCa                                             <  1:4164956/93‑1 (MQ=255)

                                            tgGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGATGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCaa                                            <  1:2514562/93‑1 (MQ=255)

                                             ggATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAAc                                           <  2:4195198/93‑1 (MQ=255)

                                             ggATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAAc                                           <  2:825790/93‑1 (MQ=255)

                                              gATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACg                                          >  2:4427704/1‑93 (MQ=255)

                                               aTCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGc                                         <  2:3933160/93‑1 (MQ=255)

                                                tCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCt                                        >  2:4165584/1‑93 (MQ=255)

                                                tCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCt                                        >  2:3721646/1‑93 (MQ=255)

                                                 ccAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTg                                       <  2:2381555/93‑1 (MQ=255)

                                                    gCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCAc                                    <  2:748374/93‑1 (MQ=255)

                                                    gCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCAc                                    >  1:3365671/1‑93 (MQ=255)

                                                        gCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCg                                >  2:2856445/1‑93 (MQ=255)

                                                          aaTATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCgag                              >  1:1524948/1‑93 (MQ=255)

                                                          aaTATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCgag                              >  1:1341014/1‑93 (MQ=255)

                                                          aaTATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCgag                              <  1:701353/93‑1 (MQ=255)

                                                           atatatTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCgaga                             <  1:3207114/93‑1 (MQ=255)

                                                            tatatTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGAt                            >  1:4587843/1‑93 (MQ=255)

                                                            tatatTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGAt                            >  2:370120/1‑93 (MQ=255)

                                                              tatTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATgg                          >  2:1288348/1‑93 (MQ=255)

                                                               atTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGc                         <  1:1987045/93‑1 (MQ=255)

                                                               atTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGc                         <  1:2373509/93‑1 (MQ=255)

                                                                tttCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCt                        >  2:860126/1‑93 (MQ=255)

                                                                tttCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCt                        >  2:2696133/1‑93 (MQ=255)

                                                                 ttCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTg                       <  2:2943939/93‑1 (MQ=255)

                                                                  tCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGa                      <  1:3847762/93‑1 (MQ=255)

                                                                   cGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAg                     <  1:3514148/93‑1 (MQ=255)

                                                                    gCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGc                    <  2:459190/93‑1 (MQ=255)

                                                                    gCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGc                    >  1:2700625/1‑93 (MQ=255)

                                                                    gCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGc                    >  1:4096733/1‑93 (MQ=255)

                                                                      cAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGt                  >  1:371041/1‑93 (MQ=255)

                                                                       aaaGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGtt                 >  1:950843/1‑92 (MQ=255)

                                                                       aaaGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTc                 >  1:4401055/1‑93 (MQ=255)

                                                                       aaaGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTc                 <  1:1095245/93‑1 (MQ=255)

                                                                        aaGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCt                >  2:1217070/1‑93 (MQ=255)

                                                                            gggTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCtgatg            >  1:4279926/1‑93 (MQ=255)

                                                                            gggTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCtgatg            <  2:3149002/93‑1 (MQ=255)

                                                                             ggTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCtgatga           <  1:3640406/93‑1 (MQ=255)

                                                                             ggTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCtgatga           >  1:3091695/1‑93 (MQ=255)

                                                                             ggTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCtgatga           <  1:1738105/93‑1 (MQ=255)

                                                                             ggTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCtgatga           >  1:161625/1‑93 (MQ=255)

                                                                              gTTTTCCGGTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGAc          >  2:4570912/1‑93 (MQ=255)

                                                                                tttCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGc        >  2:1598052/1‑93 (MQ=255)

                                                                                  tCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCtt      <  1:3418919/93‑1 (MQ=255)

                                                                                  tCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCtt      >  1:2080166/1‑93 (MQ=255)

                                                                                  tCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCtt      >  1:119858/1‑93 (MQ=255)

                                                                                   ccGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCttt     <  2:357476/93‑1 (MQ=255)

                                                                                   ccGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCttt     <  2:4293551/93‑1 (MQ=255)

                                                                                   ccGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCttt     >  1:599583/1‑93 (MQ=255)

                                                                                    cGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCtttt    <  2:1330190/93‑1 (MQ=255)

TCGGCACAATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCACTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCTTTTCC  >  NC_000913/3028308‑3028486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTTTTCGGCACAATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCACTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCTTTTCCTGCT  >  NC_000913/3028304‑3028490

TTTTTCGGCACAATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCG                                                                                               <  SRR4302535.2395053/94‑1 (MQ=60)

     CGGCACAATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGC                                                                                          >  SRR4302535.201483/1‑94 (MQ=60)

         ACAATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAA                                                                                      >  SRR4302535.2473030/1‑94 (MQ=60)

          CAATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAA                                                                                     >  SRR4302535.4402136/1‑94 (MQ=60)

          CAATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAA                                                                                     >  SRR4302535.589490/1‑94 (MQ=60)

          CAATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAA                                                                                     >  SRR4302535.2242786/1‑94 (MQ=60)

          CAATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAA                                                                                     >  SRR4302535.1361401/1‑94 (MQ=60)

           AATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAAT                                                                                    >  SRR4302535.3497504/1‑94 (MQ=60)

           AATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAAT                                                                                    <  SRR4302535.3898774/94‑1 (MQ=60)

            ATAAACACAGCGGTCGCTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATT                                                                                   <  SRR4302535.768541/94‑1 (MQ=60)

            ATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATT                                                                                   >  SRR4302535.4182742/1‑94 (MQ=60)

            ATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATT                                                                                   <  SRR4302535.968211/94‑1 (MQ=60)

            ATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATT                                                                                   >  SRR4302535.2068811/1‑94 (MQ=60)

              AAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTT                                                                                 <  SRR4302535.2194515/94‑1 (MQ=60)

                ACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTAT                                                                               <  SRR4302535.4130228/94‑1 (MQ=60)

                 CACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATT                                                                              >  SRR4302535.568136/1‑94 (MQ=60)

                 CACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATT                                                                              >  SRR4302535.2426447/1‑94 (MQ=60)

                 CACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATC                                                                              >  SRR4302535.3627481/1‑94 (MQ=60)

                  ACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCT                                                                             <  SRR4302535.735416/94‑1 (MQ=60)

                  ACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCT                                                                             >  SRR4302535.35516/1‑94 (MQ=60)

                   CAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTG                                                                            <  SRR4302535.4675807/94‑1 (MQ=60)

                     GCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCG                                                                          <  SRR4302535.3485711/94‑1 (MQ=60)

                       GGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCC                                                                        >  SRR4302535.1243254/1‑94 (MQ=60)

                         TCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTT                                                                      <  SRR4302535.621934/94‑1 (MQ=60)

                          CACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTT                                                                     >  SRR4302535.4683653/1‑94 (MQ=60)

                           ACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTA                                                                    >  SRR4302535.4189652/1‑94 (MQ=60)

                           ACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTA                                                                    >  SRR4302535.4053808/1‑94 (MQ=60)

                           ACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTA                                                                    >  SRR4302535.2333596/1‑94 (MQ=60)

                           ACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTA                                                                    >  SRR4302535.746024/1‑94 (MQ=60)

                           ACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCCCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTA                                                                    >  SRR4302535.1538944/1‑94 (MQ=60)

                            CTCTCATAAGTTGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCACTCGCTGAAATTTTATCTGCGCCTTTAC                                                                   <  SRR4302535.541129/94‑1 (MQ=60)

                            CTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTAC                                                                   >  SRR4302535.4686248/1‑94 (MQ=60)

                            CTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTAC                                                                   >  SRR4302535.4694726/1‑94 (MQ=60)

                            CTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTAC                                                                   <  SRR4302535.3339414/94‑1 (MQ=60)

                            CTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCACTCGCTGAAATTTTATCTGCGCCTTTAC                                                                   <  SRR4302535.597883/94‑1 (MQ=60)

                              CTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGC                                                                 >  SRR4302535.3572563/1‑94 (MQ=60)

                              CTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGC                                                                 >  SRR4302535.2783875/1‑94 (MQ=60)

                               TCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCG                                                                >  SRR4302535.4380403/1‑94 (MQ=60)

                               TCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCG                                                                >  SRR4302535.554580/1‑94 (MQ=60)

                                CATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGA                                                               >  SRR4302535.2075931/1‑94 (MQ=60)

                                CATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGGTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGA                                                               >  SRR4302535.1376226/1‑94 (MQ=60)

                                 ATAAGTGGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAG                                                              >  SRR4302535.1626898/1‑94 (MQ=60)

                                 ATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAG                                                              <  SRR4302535.804397/94‑1 (MQ=60)

                                 ATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAG                                                              >  SRR4302535.332234/1‑94 (MQ=60)

                                 ATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAG                                                              >  SRR4302535.3957101/1‑94 (MQ=60)

                                  TAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGT                                                             >  SRR4302535.1115409/1‑94 (MQ=60)

                                  TAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCACTCGCTGAAATTTTATCTGCGCCTTTACGCGAGT                                                             >  SRR4302535.2042988/1‑94 (MQ=60)

                                    AGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTA                                                           <  SRR4302535.1549480/94‑1 (MQ=60)

                                    AGTCGCTTGTTGTGGATCCAGCCCGCAATATAATTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTA                                                           >  SRR4302535.3155327/1‑94 (MQ=60)

                                      TCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAAC                                                         <  SRR4302535.3485063/94‑1 (MQ=60)

                                      TCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAAC                                                         <  SRR4302535.1001348/94‑1 (MQ=60)

                                       CGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCACTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACG                                                        >  SRR4302535.1346190/1‑94 (MQ=60)

                                         CTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGG                                                      <  SRR4302535.1948890/94‑1 (MQ=60)

                                         CTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGG                                                      <  SRR4302535.1279510/94‑1 (MQ=60)

                                         CTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGG                                                      >  SRR4302535.2378960/1‑94 (MQ=60)

                                          TTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGG                                                     >  SRR4302535.3733792/1‑94 (MQ=60)

                                          TTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGG                                                     <  SRR4302535.602664/94‑1 (MQ=60)

                                          TTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGG                                                     <  SRR4302535.339727/94‑1 (MQ=60)

                                           TGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGG                                                    >  SRR4302535.2668370/1‑94 (MQ=60)

                                            GTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAG                                                   >  SRR4302535.3317183/1‑94 (MQ=60)

                                            GTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAG                                                   >  SRR4302535.1499573/1‑94 (MQ=60)

                                              TGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGTTCGCTGAAACTTTATCTGCGCCTTTACGCGAGTTAACGGGGGGCA                                                 >  SRR4302535.4387985/1‑94 (MQ=60)

                                               GTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAA                                                <  SRR4302535.4193475/94‑1 (MQ=60)

                                                TGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGATGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAAC                                               <  SRR4302535.2532690/94‑1 (MQ=60)

                                                 GGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACG                                              <  SRR4302535.2766619/94‑1 (MQ=60)

                                                       AGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCAC                                        >  SRR4302535.3389090/1‑94 (MQ=60)

                                                         CCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTG                                      >  SRR4302535.3298457/1‑94 (MQ=60)

                                                            GCAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGA                                   >  SRR4302535.4203918/1‑94 (MQ=60)

                                                             CAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAG                                  >  SRR4302535.1350579/1‑94 (MQ=60)

                                                             CAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAG                                  >  SRR4302535.1535936/1‑94 (MQ=60)

                                                             CAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAG                                  <  SRR4302535.2916762/94‑1 (MQ=60)

                                                             CAATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAG                                  <  SRR4302535.178066/94‑1 (MQ=60)

                                                              AATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGA                                 >  SRR4302535.4355491/1‑94 (MQ=60)

                                                              AATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGA                                 <  SRR4302535.706270/94‑1 (MQ=60)

                                                               ATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGAT                                >  SRR4302535.3535060/1‑94 (MQ=60)

                                                               ATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGAT                                <  SRR4302535.3229327/94‑1 (MQ=60)

                                                               ATATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGAT                                >  SRR4302535.4619082/1‑94 (MQ=60)

                                                                TATATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATG                               <  SRR4302535.2172009/94‑1 (MQ=60)

                                                                  TATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGC                             >  SRR4302535.4077395/1‑94 (MQ=60)

                                                                   ATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCT                            <  SRR4302535.2001354/94‑1 (MQ=60)

                                                                   ATTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCT                            <  SRR4302535.2390557/94‑1 (MQ=60)

                                                                    TTTCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTG                           <  SRR4302535.3992078/94‑1 (MQ=60)

                                                                      TCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAG                         <  SRR4302535.3874247/94‑1 (MQ=60)

                                                                      TCGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAG                         <  SRR4302535.3337019/94‑1 (MQ=60)

                                                                       CGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGC                        <  SRR4302535.1727068/94‑1 (MQ=60)

                                                                       CGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGC                        <  SRR4302535.3538568/94‑1 (MQ=60)

                                                                       CGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGC                        >  SRR4302535.4124772/1‑94 (MQ=60)

                                                                       CGCCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGC                        >  SRR4302535.2719921/1‑94 (MQ=60)

                                                                        GCCAGAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCG                       <  SRR4302535.4416244/94‑1 (MQ=60)

                                                                         CCAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGT                      >  SRR4302535.373609/1‑94 (MQ=60)

                                                                          CAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTT                     >  SRR4302535.957574/1‑94 (MQ=60)

                                                                          CAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTC                     >  SRR4302535.4431172/1‑94 (MQ=60)

                                                                          CAAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTC                     <  SRR4302535.3363548/94‑1 (MQ=60)

                                                                           AAAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCT                    <  SRR4302535.1103039/94‑1 (MQ=60)

                                                                            AAGTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTG                   <  SRR4302535.2059104/94‑1 (MQ=60)

                                                                              GTGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGAT                 <  SRR4302535.198775/94‑1 (MQ=60)

                                                                               TGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATG                >  SRR4302535.4309213/1‑94 (MQ=60)

                                                                               TGGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATG                >  SRR4302535.3503719/1‑94 (MQ=60)

                                                                                GGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGA               <  SRR4302535.1547733/94‑1 (MQ=60)

                                                                                GGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGA               >  SRR4302535.4012959/1‑94 (MQ=60)

                                                                                GGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGA               >  SRR4302535.162757/1‑94 (MQ=60)

                                                                                GGGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGA               >  SRR4302535.3113225/1‑94 (MQ=60)

                                                                                GGGTTTTCCGTGCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGA               <  SRR4302535.3778114/94‑1 (MQ=60)

                                                                                 GGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGAC              <  SRR4302535.3665625/94‑1 (MQ=60)

                                                                                 GGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGAC              <  SRR4302535.953928/94‑1 (MQ=60)

                                                                                 GGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGAC              >  SRR4302535.3456169/1‑94 (MQ=60)

                                                                                 GGTTTTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGAC              <  SRR4302535.1750666/94‑1 (MQ=60)

                                                                                     TTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCTT          >  SRR4302535.2095154/1‑94 (MQ=60)

                                                                                     TTCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCTT          >  SRR4302535.120698/1‑94 (MQ=60)

                                                                                      TCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCTTT         >  SRR4302535.603777/1‑94 (MQ=60)

                                                                                      TCCGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCTTT         <  SRR4302535.3442700/94‑1 (MQ=60)

                                                                                       CCGTTCGCTCGCTGAAATTTTATTTGCGCCTTTACGCGAGTTAACGGGGGCCAACGCTGCACTGCtagagggcggagcggcgggtgacgctttc        >  SRR4302535.463292/1‑65 (MQ=60)

                                                                                        CGTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCTTTTC       >  SRR4302535.4350300/1‑94 (MQ=60)

                                                                                         GTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGCGATGGCTGAGCGTCTGATGACGCTTTTCT      >  SRR4302535.773186/1‑94 (MQ=60)

                                                                                         GTTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCTTTTCC      <  SRR4302535.2063739/94‑1 (MQ=60)

                                                                                          TTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCTTTTCCT     <  SRR4302535.4698601/94‑1 (MQ=60)

                                                                                          TTCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCTTTTCCT     <  SRR4302535.4437245/94‑1 (MQ=60)

                                                                                           TCGCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCTTTTCCTG    <  SRR4302535.3315956/94‑1 (MQ=60)

                                                                                             GCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCTTTTCCTGCT  <  SRR4302535.1666722/94‑1 (MQ=60)

                                                                                             GCTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCTTTTCCTGCT  <  SRR4302535.1628120/94‑1 (MQ=60)

TTTTTCGGCACAATAAACACAGCGGTCACTCTCATAAGTCGCTTGTTGTGGATCCAGCCCGCAATATATTTCGCCAAAGTGGGTTTTCCGTTCACTCGCTGAAATTTTATCTGCGCCTTTACGCGAGTTAACGGGGAGCAACGCTGCACTGCGAGATGGCTGAGCGTCTGATGACGCTTTTCCTGCT  >  NC_000913/3028304‑3028490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`