Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,079,142 |
A→G |
G171G (GGT→GGC) |
tktA ← |
transketolase 1 isozyme |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,079,142 | 0 | A | G | 100.0%
| 705.2
/ NA
| 222 | G171G (GGT→GGC) | tktA | transketolase 1 isozyme |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (135/87); total (135/87) |
Only 100 of 228 total aligned reads displayed.
GGTGTCGTCGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTACCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCGTG > NC_000913/3079052‑3079231
|
ggTGTCGTCGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGcc < 2:2896784/93‑1 (MQ=255)
ggTGTCGTCGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGcc > 1:190354/1‑93 (MQ=255)
gtgtCGTCGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGccc > 1:1413804/1‑93 (MQ=255)
tgtCGTCGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCg < 1:3189787/93‑1 (MQ=255)
gtcgtcGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGc > 1:3243137/1‑93 (MQ=255)
tcgtcgGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGcc > 2:1087536/1‑93 (MQ=255)
tcgtcgGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGcc < 1:3344201/93‑1 (MQ=255)
cgtcgGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCa < 2:1904667/93‑1 (MQ=255)
gtcgGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCag < 2:4438229/93‑1 (MQ=255)
cgGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCagag < 1:13427/93‑1 (MQ=255)
ggTGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCagaga > 2:2139950/1‑93 (MQ=255)
ggTGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCagaga < 1:1507750/93‑1 (MQ=255)
ggTGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCagaga > 1:23794/1‑93 (MQ=255)
taaaCCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGc < 2:2967112/91‑1 (MQ=255)
tGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGc > 2:457115/1‑93 (MQ=255)
aCCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCaaa > 2:1077324/1‑93 (MQ=255)
ccAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAAc < 1:1747344/93‑1 (MQ=255)
cAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACt > 2:684059/1‑93 (MQ=255)
cAGCCTTCAACGGTGCCATTGATAAAAATTCCGGTTGCAATCGTAAATTCAAATAATTTTCCCAAGCTCCAGCGTGCCCGCCAGAGAGCAAAc < 2:2806181/93‑1 (MQ=255)
aGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACtt > 2:3736926/1‑93 (MQ=255)
gCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTc > 1:3916527/1‑93 (MQ=255)
gCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTc > 1:788289/1‑93 (MQ=255)
gCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTc > 2:3915632/1‑93 (MQ=255)
cTTCAACGTGCCCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGt < 2:2475333/93‑1 (MQ=255)
ttCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTg > 1:513550/1‑93 (MQ=255)
ttCAACGTGAACATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTg > 2:2868542/1‑93 (MQ=255)
aaCGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGga < 1:4119848/93‑1 (MQ=255)
aCGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGgag > 1:2330515/1‑93 (MQ=255)
cGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCTTGCCCGCCAGAGAGCAAACTTCGTGGgaga < 2:1855748/93‑1 (MQ=255)
gTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGAt > 1:2018315/1‑93 (MQ=255)
gACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCGCGCCAGAGAGCAAACTTCGTGGGAGATGc > 2:4603131/1‑93 (MQ=255)
aCCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGcc < 1:2771325/93‑1 (MQ=255)
aCCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGcc < 1:2547192/93‑1 (MQ=255)
ccATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCt > 2:1564312/1‑93 (MQ=255)
ccATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCt < 2:938411/93‑1 (MQ=255)
cATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCtt > 2:3672610/1‑93 (MQ=255)
aTCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTc > 1:1820078/1‑93 (MQ=255)
tCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTcc > 1:3112268/1‑93 (MQ=255)
tCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTcc > 1:3421776/1‑93 (MQ=255)
tCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGACGCCTTcc > 1:3234865/1‑93 (MQ=255)
gATAGAAATACC‑GATGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCcat > 2:1625098/1‑93 (MQ=255)
tAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCcatca < 2:74583/93‑1 (MQ=255)
aGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCcatcat < 2:2049724/93‑1 (MQ=255)
aGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCcatcat < 1:4471675/93‑1 (MQ=255)
aGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCcatcat > 2:2546737/1‑93 (MQ=255)
aaaTACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGc < 2:1763745/93‑1 (MQ=255)
aaaTACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGc < 2:654663/93‑1 (MQ=255)
aaTACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCa < 1:2069542/93‑1 (MQ=255)
aTACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAg > 2:3946240/1‑93 (MQ=255)
aCC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGcc > 2:881201/1‑93 (MQ=255)
cc‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCg > 2:4299558/1‑93 (MQ=255)
c‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGt > 1:1628233/1‑93 (MQ=255)
c‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGt > 1:1020572/1‑93 (MQ=255)
ttGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCg > 1:532568/1‑93 (MQ=255)
ttGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCg > 1:292996/1‑93 (MQ=255)
ttGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCg > 1:2817094/1‑93 (MQ=255)
gTCATCGTTGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGcc > 2:4558828/1‑93 (MQ=255)
cATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCa < 1:357492/93‑1 (MQ=255)
aTCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCAt > 2:3445949/1‑93 (MQ=255)
aTCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCAt > 1:1716679/1‑93 (MQ=255)
gTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGaa > 1:815421/1‑93 (MQ=255)
gTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGaa > 1:746032/1‑93 (MQ=255)
gTAGAAGGCAATCAGTTTCCCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGaa < 1:1115446/93‑1 (MQ=255)
aGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAgg < 1:485457/93‑1 (MQ=255)
aGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAgg < 1:1089157/93‑1 (MQ=255)
gAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAggg > 2:2974119/1‑92 (MQ=255)
aaTGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCg > 2:3037704/1‑93 (MQ=255)
aTGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGt > 2:2720079/1‑93 (MQ=255)
aTGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGt > 2:2646216/1‑93 (MQ=255)
tGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGGAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTa > 2:3823820/1‑93 (MQ=255)
tGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTa < 1:1783487/93‑1 (MQ=255)
cAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAgg > 2:3109640/1‑93 (MQ=255)
aaTCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGgt > 2:358620/1‑93 (MQ=255)
aaTCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGgt > 1:2269821/1‑93 (MQ=255)
aaTCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGgt > 2:2273720/1‑93 (MQ=255)
aaTCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGgt > 2:1470366/1‑93 (MQ=255)
aTCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAgggg > 1:3848938/1‑91 (MQ=255)
cAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTa < 1:986331/93‑1 (MQ=255)
aGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAg < 2:1271578/93‑1 (MQ=255)
aGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAg < 1:4062483/93‑1 (MQ=255)
gTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGt < 2:3212654/93‑1 (MQ=255)
gTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGt < 2:3081806/93‑1 (MQ=255)
gTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGt > 1:2492090/1‑93 (MQ=255)
gTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGt > 1:3604335/1‑93 (MQ=255)
ccAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGa > 2:2348619/1‑93 (MQ=255)
ccAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGa < 2:4360503/93‑1 (MQ=255)
gCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCAATGAAGGCGTAGGTGTAGTGGTCGACaa > 2:3468915/1‑93 (MQ=255)
cTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAAt < 2:954454/93‑1 (MQ=255)
cTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAAt > 2:4172027/1‑93 (MQ=255)
cTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAAt < 1:893929/93‑1 (MQ=255)
cTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAAt < 1:1283844/93‑1 (MQ=255)
ttCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATg > 2:57019/1‑93 (MQ=255)
tCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGt < 1:1861949/93‑1 (MQ=255)
cAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTc > 2:3684251/1‑93 (MQ=255)
aGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCg < 2:1183483/93‑1 (MQ=255)
aGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCg > 1:432992/1‑93 (MQ=255)
gCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCGt < 2:3060991/93‑1 (MQ=255)
gCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCGt < 2:1196014/93‑1 (MQ=255)
gCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCGt < 1:3821487/93‑1 (MQ=255)
gCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCGt < 1:1721565/93‑1 (MQ=255)
|
GGTGTCGTCGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACC‑GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTACCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCGTG > NC_000913/3079052‑3079231
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGCGGTGTCGTCGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTACCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCGTGGC > NC_000913/3079049‑3079233
|
tggggttgcggccgttAACCAGCCCTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTG < SRR4302535.821252/78‑1 (MQ=60)
CGGTGTCGTCGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCC > SRR4302535.191668/1‑94 (MQ=60)
GGTGTCGTCGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCC > SRR4302535.1423897/1‑94 (MQ=60)
GTGTCGTCGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCG < SRR4302535.1898910/94‑1 (MQ=60)
TGTCGTCGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGC > SRR4302535.3265666/1‑94 (MQ=60)
TGTCGTCGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGC < SRR4302535.3211848/94‑1 (MQ=60)
GTCGTCGGTGAACCAGCCTTCAACGCGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCC > SRR4302535.1502569/1‑94 (MQ=60)
TCGTCGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCA < SRR4302535.3367498/94‑1 (MQ=60)
CGTCGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAG > SRR4302535.714120/1‑94 (MQ=60)
CGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGA > SRR4302535.23981/1‑94 (MQ=60)
CGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGA < SRR4302535.13527/94‑1 (MQ=60)
GGTGAACCAGCCTTCAACGTGACCATCGATAGAACTACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAG < SRR4302535.959726/94‑1 (MQ=60)
GGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAG < SRR4302535.1518591/94‑1 (MQ=60)
GGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAG < SRR4302535.4102/94‑1 (MQ=60)
GTGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGC > SRR4302535.52510/1‑94 (MQ=60)
GTGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGC > SRR4302535.1796132/1‑94 (MQ=60)
TTAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCA < SRR4302535.1377670/94‑1 (MQ=60)
TGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCA < SRR4302535.256221/94‑1 (MQ=60)
AACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAA > SRR4302535.1102230/1‑94 (MQ=60)
ACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAAC < SRR4302535.1543641/94‑1 (MQ=60)
CCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACT < SRR4302535.1759981/94‑1 (MQ=60)
CCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACT > SRR4302535.3329143/1‑94 (MQ=60)
CCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACT > SRR4302535.762591/1‑94 (MQ=60)
CAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTT > SRR4302535.2142242/1‑94 (MQ=60)
AGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTC < SRR4302535.673499/94‑1 (MQ=60)
AGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTC > SRR4302535.3943327/1‑94 (MQ=60)
AGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTC > SRR4302535.793825/1‑94 (MQ=60)
CTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTG > SRR4302535.1857901/1‑94 (MQ=60)
CTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTG > SRR4302535.517139/1‑94 (MQ=60)
CTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTG > SRR4302535.3603360/1‑94 (MQ=60)
TTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGG > SRR4302535.1657457/1‑94 (MQ=60)
TTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGG < SRR4302535.491178/94‑1 (MQ=60)
TCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGG < SRR4302535.3981722/94‑1 (MQ=60)
AACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAG > SRR4302535.2347184/1‑94 (MQ=60)
AACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAG < SRR4302535.4148042/94‑1 (MQ=60)
CGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGAT > SRR4302535.2032858/1‑94 (MQ=60)
CGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGAT > SRR4302535.2334872/1‑94 (MQ=60)
GTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCCTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATG < SRR4302535.2038481/94‑1 (MQ=60)
TGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGC > SRR4302535.2659163/1‑94 (MQ=60)
TGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGC > SRR4302535.3509128/1‑94 (MQ=60)
ACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCT < SRR4302535.2565521/94‑1 (MQ=60)
ACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCT < SRR4302535.2791061/94‑1 (MQ=60)
CATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTC > SRR4302535.2737561/1‑94 (MQ=60)
CATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTC > SRR4302535.1833227/1‑94 (MQ=60)
ATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCC > SRR4302535.3445575/1‑94 (MQ=60)
ATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCC > SRR4302535.890954/1‑94 (MQ=60)
ATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCC > SRR4302535.3133934/1‑94 (MQ=60)
ATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCC > SRR4302535.4423151/1‑94 (MQ=60)
ATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGACGCCTTCC > SRR4302535.3257315/1‑94 (MQ=60)
AGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATG > SRR4302535.1643876/1‑94 (MQ=60)
AGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATG < SRR4302535.4502364/94‑1 (MQ=60)
AAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCA < SRR4302535.3231042/94‑1 (MQ=60)
AATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAG < SRR4302535.2084459/94‑1 (MQ=60)
ATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGC > SRR4302535.181906/1‑94 (MQ=60)
CCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGT > SRR4302535.1027824/1‑94 (MQ=60)
CCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGT > SRR4302535.1639988/1‑94 (MQ=60)
GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGCTGCCTTCCATCATGCAGCCGTCT > SRR4302535.4005846/1‑94 (MQ=60)
GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCG > SRR4302535.295044/1‑94 (MQ=60)
GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCG > SRR4302535.2837103/1‑94 (MQ=60)
GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCG > SRR4302535.536295/1‑94 (MQ=60)
GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCG < SRR4302535.1767701/94‑1 (MQ=60)
GTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCG > SRR4302535.1729943/1‑94 (MQ=60)
TCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCA > SRR4302535.2888187/1‑94 (MQ=60)
CATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCAT < SRR4302535.359965/94‑1 (MQ=60)
CATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCAT > SRR4302535.1729098/1‑94 (MQ=60)
ATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATG < SRR4302535.312944/94‑1 (MQ=60)
TCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGA > SRR4302535.1285845/1‑94 (MQ=60)
TCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGA < SRR4302535.475748/94‑1 (MQ=60)
CGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAA > SRR4302535.751275/1‑94 (MQ=60)
CGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAA > SRR4302535.2313338/1‑94 (MQ=60)
CGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAA > SRR4302535.821138/1‑94 (MQ=60)
CGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAA > SRR4302535.388393/1‑94 (MQ=60)
GTAGAAGGCAATCAGTTTCCCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAG < SRR4302535.1123396/94‑1 (MQ=60)
TAGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGG > SRR4302535.1036949/1‑94 (MQ=60)
AGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGC < SRR4302535.3863985/94‑1 (MQ=60)
AGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGC < SRR4302535.488860/94‑1 (MQ=60)
AGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGC < SRR4302535.1096909/94‑1 (MQ=60)
AGAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGC > SRR4302535.1759539/1‑94 (MQ=60)
GAATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCG < SRR4302535.2437637/94‑1 (MQ=60)
AATGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGT > SRR4302535.2823324/1‑94 (MQ=60)
TGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAG < SRR4302535.1796395/94‑1 (MQ=60)
TGCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAG > SRR4302535.326114/1‑94 (MQ=60)
GCAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGG < SRR4302535.3813495/94‑1 (MQ=60)
CAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGT > SRR4302535.3382604/1‑94 (MQ=60)
CAATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGT > SRR4302535.2286006/1‑94 (MQ=60)
AATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTG < SRR4302535.1349901/94‑1 (MQ=60)
AATCAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGGG > SRR4302535.3875428/1‑94 (MQ=60)
CAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAG > SRR4302535.1935955/1‑94 (MQ=60)
CAGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAG < SRR4302535.993341/94‑1 (MQ=60)
AGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGT > SRR4302535.2510073/1‑94 (MQ=60)
AGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGT < SRR4302535.1987168/94‑1 (MQ=60)
AGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGT < SRR4302535.4090288/94‑1 (MQ=60)
AGTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGT > SRR4302535.3629343/1‑94 (MQ=60)
GTTTACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTG < SRR4302535.4234529/94‑1 (MQ=60)
TACCCAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTC > SRR4302535.1305063/1‑94 (MQ=60)
CAGCTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACA < SRR4302535.364217/94‑1 (MQ=60)
CTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATG > SRR4302535.909103/1‑94 (MQ=60)
CTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATG < SRR4302535.900267/94‑1 (MQ=60)
CTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATG > SRR4302535.3188784/1‑94 (MQ=60)
CTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATG < SRR4302535.3306393/94‑1 (MQ=60)
CTTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATG < SRR4302535.1292995/94‑1 (MQ=60)
TTCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGT < SRR4302535.2367606/94‑1 (MQ=60)
TCAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTC < SRR4302535.1875376/94‑1 (MQ=60)
CAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCGTGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCG > SRR4302535.3061893/1‑94 (MQ=60)
CAGCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCG > SRR4302535.436008/1‑94 (MQ=60)
GCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCGTG < SRR4302535.3847851/94‑1 (MQ=60)
GCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCGTG < SRR4302535.813304/94‑1 (MQ=60)
GCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCGTG < SRR4302535.1734015/94‑1 (MQ=60)
GCGTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCGTG > SRR4302535.454381/1‑94 (MQ=60)
CGTGCCCGCCAGAGAGCAAACTTCGTGCGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCGTGG > SRR4302535.4157809/1‑94 (MQ=60)
GTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCGTGGC > SRR4302535.4167532/1‑94 (MQ=60)
GTGCCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCGTGGC > SRR4302535.4525273/1‑94 (MQ=60)
|
TGCGGTGTCGTCGGTGAACCAGCCTTCAACGTGACCATCGATAGAAATACCGTTGTCATCGTAGAATGCAATCAGTTTACCCAGCTTCAGCGTACCCGCCAGAGAGCAAACTTCGTGGGAGATGCCTTCCATCATGCAGCCGTCGCCCATGAAGGCGTAGGTGTAGTGGTCGACAATGTCGTGGC > NC_000913/3079049‑3079233
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
