Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,123,585 |
+G |
coding (953/2286 nt) |
glcF ← |
glycolate oxidase iron‑sulfur subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,123,582 | 1 | . | G | 98.6%
| 446.9
/ ‑1.6
| 145 | coding (956/2286 nt) | glcF | glycolate oxidase iron‑sulfur subunit |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base G (74/69); total (75/70) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.00e-01 |
Only 100 of 160 total aligned reads displayed.
AGTTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑GG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTG > NC_000913/3123490‑3123669
|
gTTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑g < 1:3884559/93‑1 (MQ=255)
gTTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑g > 1:146705/1‑93 (MQ=255)
ttCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑gg > 1:4294463/1‑93 (MQ=255)
ttCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑gg < 2:136074/93‑1 (MQ=255)
tCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑gg‑g > 1:3645997/1‑93 (MQ=255)
cgcgTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑gg‑ggc < 1:937895/93‑3 (MQ=255)
cgTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGGGATAGCGGAATAAAGGAGACGATAGC‑gg‑ggcaa > 1:43863/1‑89 (MQ=255)
tACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAg > 1:3482080/1‑93 (MQ=255)
aTGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGccc > 1:4213476/1‑92 (MQ=255)
aTGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGcca < 2:3615733/93‑1 (MQ=255)
gACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCAt > 2:4002891/1‑93 (MQ=255)
aCCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCAtc < 1:740163/93‑1 (MQ=255)
ggggTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTcc > 2:18352/1‑93 (MQ=255)
ggggTTAAACACGCCGCAAGGGTCAAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTcc > 2:4218248/1‑93 (MQ=255)
gggTTAAACACGCCGCAGGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCg < 1:2438617/93‑1 (MQ=255)
ggTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCgg > 1:480289/1‑93 (MQ=255)
aaCACGCCGCAAGGTTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTa < 2:1046255/93‑1 (MQ=255)
aaCACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTa > 2:2821266/1‑93 (MQ=255)
acacGCCTCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTaa < 1:1585237/93‑1 (MQ=255)
acacGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTaa > 1:552547/1‑93 (MQ=255)
ccgcAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCgg < 2:2343474/93‑1 (MQ=255)
ccgcAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCgg < 2:301652/93‑1 (MQ=255)
ccgcAAGGGGCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCgg < 2:912862/93‑1 (MQ=255)
ccacAAGGGTCGAGCTGCTGTTTAATCTGCTGGTGATATCGTAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCgg < 1:375965/90‑1 (MQ=255)
cgcAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCggg > 1:1758714/1‑93 (MQ=255)
gcAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAATCGGGt > 2:3634260/1‑93 (MQ=255)
cAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTc > 2:3812523/1‑93 (MQ=255)
cAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTc < 2:1488317/93‑1 (MQ=255)
cAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTc > 2:2538283/1‑93 (MQ=255)
aaGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCg > 2:4610199/1‑93 (MQ=255)
aGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGc > 1:1499632/1‑93 (MQ=255)
gggTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCa < 1:3059666/93‑1 (MQ=255)
gggTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCa > 2:717277/1‑93 (MQ=255)
ggTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCAt < 1:1247499/93‑1 (MQ=255)
ggTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCAt < 2:2512565/93‑1 (MQ=255)
ggTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCAt > 1:2602753/1‑93 (MQ=255)
gTCGAGCTGCTGTTTAAGCTGCTGGGGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATg > 2:455872/1‑93 (MQ=255)
cGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGAc < 1:276192/93‑1 (MQ=255)
cGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGAc < 1:1363801/93‑1 (MQ=255)
cGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGAc < 2:4402013/93‑1 (MQ=255)
cGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGAc < 1:4308808/93‑1 (MQ=255)
gAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGAcc > 1:3224089/1‑93 (MQ=255)
aGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGAccc > 2:3389787/1‑92 (MQ=255)
aGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCg > 2:3582321/1‑93 (MQ=255)
gctgctGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGc > 2:4416972/1‑93 (MQ=255)
ctgctgTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGcc > 1:2169673/1‑93 (MQ=255)
tgctgTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCa > 1:4531206/1‑93 (MQ=255)
ctgTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGc < 1:398929/93‑1 (MQ=255)
tgTTTAAGCGGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCCCCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCg < 1:822017/93‑1 (MQ=255)
gTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGt > 1:2793259/1‑93 (MQ=255)
gTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGt > 1:2253468/1‑93 (MQ=255)
tttAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGtt < 2:3878870/93‑1 (MQ=255)
tttAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGtt < 1:1762450/93‑1 (MQ=255)
tttAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGtt > 1:4342255/1‑93 (MQ=255)
ttAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTg < 1:1434002/93‑1 (MQ=255)
ttAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTg > 1:1085096/1‑93 (MQ=255)
tAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGc < 2:1775966/93‑1 (MQ=255)
aaGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCg < 2:2799492/93‑1 (MQ=255)
aaGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCg < 2:1748541/93‑1 (MQ=255)
aGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCgg < 2:4507595/93‑1 (MQ=255)
gctgctGGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCggg < 2:4312165/93‑1 (MQ=255)
tgctgGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcg > 1:893395/1‑93 (MQ=255)
tgctgGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcg < 2:18789/93‑1 (MQ=255)
tgctgGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGCCGCATGACCGCCAGCGTTGCGGgcg > 1:2461/1‑93 (MQ=255)
gctgGTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcga > 1:2700656/1‑93 (MQ=255)
ctgGTGATAGCGAAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgat < 1:4672077/93‑1 (MQ=255)
gTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgcg < 1:2350414/93‑1 (MQ=255)
gTGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgcg > 1:2259409/1‑93 (MQ=255)
tGATAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGgcgatgcga < 1:3438594/93‑1 (MQ=255)
aTAGGGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGcgatgcgatg < 1:840043/93‑1 (MQ=255)
tAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATgg > 2:854033/1‑93 (MQ=255)
tAGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATgg > 1:149064/1‑93 (MQ=255)
aGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGa < 1:2674013/93‑1 (MQ=255)
aGCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGa > 1:4464672/1‑93 (MQ=255)
aGCGGAAAAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGa < 1:2533640/93‑1 (MQ=255)
gCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCAGCATCTCCGGCACTAAAGCGGGTAGCATGACCGTCAGCGTTGCGAGCGATGCGATGGAt > 1:18522/1‑93 (MQ=255)
gCGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAt < 1:3527857/93‑1 (MQ=255)
cGGAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAtt < 2:308286/93‑1 (MQ=255)
ggAATAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAttt > 1:2376954/1‑93 (MQ=255)
gAATAAAGGAGCCGATAGC‑GGAGCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTg > 2:2985389/1‑93 (MQ=255)
aaTAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGa < 2:1653001/93‑1 (MQ=255)
aaTAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGa > 1:314979/1‑93 (MQ=255)
aTAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGAt < 1:272834/93‑1 (MQ=255)
tAAAGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGAtt > 2:177691/1‑93 (MQ=255)
aaaaGGAGCGGATAGCGGG‑GCAAAGCCCCCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGAtt < 2:1461388/92‑1 (MQ=255)
aaaaGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGAtt < 2:890003/92‑1 (MQ=255)
aaGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGt > 1:1050851/1‑93 (MQ=255)
aGGAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTc > 1:2406768/1‑93 (MQ=255)
ggAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTcc < 2:3428496/93‑1 (MQ=255)
ggAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTcc < 1:1787933/93‑1 (MQ=255)
ggAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTcc > 1:663973/1‑93 (MQ=255)
ggAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTcc < 1:2932581/93‑1 (MQ=255)
gAGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCt > 1:3287503/1‑93 (MQ=255)
gAGCAGATCGCGGG‑GCAAAGCCACCATCTCCGGCACTAACGCTGGTCTCATGTCCGCCATCGTTGCGGGCGATCCGATGGATTTGATTGTCCt < 2:675107/93‑1 (MQ=255)
aGCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTc < 1:3987499/93‑1 (MQ=255)
gCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCg > 2:2423542/1‑93 (MQ=255)
gCCGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCg < 2:1812178/93‑1 (MQ=255)
cGATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGc < 1:51970/93‑1 (MQ=255)
gATAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCt > 2:2277472/1‑93 (MQ=255)
aTAGCGGG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTg > 1:1239635/1‑93 (MQ=255)
|
AGTTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑GG‑GCAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTG > NC_000913/3123490‑3123669
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑G‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATTTCA > NC_000913/3123492‑3123678
|
TTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑G‑GG < SRR4302535.1107531/94‑1 (MQ=60)
TTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑G‑GG > SRR4302535.3671244/1‑94 (MQ=60)
TTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCAGATAGC‑G‑GG > SRR4302535.779569/1‑94 (MQ=60)
TCCGCGTACATTCGACCGGGGTAAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑G‑GG‑G < SRR4302535.86039/94‑1 (MQ=60)
CGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑G‑GGgca < SRR4302535.944538/94‑4 (MQ=60)
GCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGGGATAGCGGAATAAAGGAGACGATAGCGG‑GG‑CAA > SRR4302535.44194/1‑94 (MQ=60)
GTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAG > SRR4302535.3506262/1‑94 (MQ=60)
GTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGGGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAG > SRR4302535.553442/1‑94 (MQ=60)
TACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑G‑GGgcacagc > SRR4302535.1912338/1‑87 (MQ=60)
CATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCC > SRR4302535.4242313/1‑94 (MQ=60)
CATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCA > SRR4302535.4438355/1‑94 (MQ=60)
GACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATC < SRR4302535.274832/94‑1 (MQ=60)
ACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCT < SRR4302535.3506253/94‑1 (MQ=60)
ACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCT < SRR4302535.745365/94‑1 (MQ=60)
GGGTTAAACACGCCGCAGGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGG < SRR4302535.2456184/94‑1 (MQ=60)
GGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGG < SRR4302535.2502572/94‑1 (MQ=60)
GGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGG > SRR4302535.483657/1‑94 (MQ=60)
AACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAA > SRR4302535.4324382/1‑94 (MQ=60)
AACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAA > SRR4302535.556417/1‑94 (MQ=60)
ACACGCCTCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAA < SRR4302535.1596675/94‑1 (MQ=60)
ACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAA > SRR4302535.1486800/1‑94 (MQ=60)
CCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGG > SRR4302535.1771427/1‑94 (MQ=60)
CCACAAGGGTCGAGCTGCTGTTTAATCTGCTGGTGATATCGTAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGG < SRR4302535.378573/94‑1 (MQ=60)
CGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGT > SRR4302535.4707950/1‑94 (MQ=60)
AAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGC > SRR4302535.1510420/1‑94 (MQ=60)
GGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCAT > SRR4302535.2621436/1‑94 (MQ=60)
GGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCAT < SRR4302535.3081067/94‑1 (MQ=60)
GGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATG < SRR4302535.2311234/94‑1 (MQ=60)
GGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATG < SRR4302535.1256399/94‑1 (MQ=60)
CGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACC < SRR4302535.278119/94‑1 (MQ=60)
CGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACC > SRR4302535.3246440/1‑94 (MQ=60)
CGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACC < SRR4302535.1373553/94‑1 (MQ=60)
CGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACC < SRR4302535.4338286/94‑1 (MQ=60)
GCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCC > SRR4302535.2185212/1‑94 (MQ=60)
GCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCC > SRR4302535.1376951/1‑94 (MQ=60)
CTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCA < SRR4302535.2409375/94‑1 (MQ=60)
CTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCA > SRR4302535.4562222/1‑94 (MQ=60)
CTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCA > SRR4302535.2643423/1‑94 (MQ=60)
CTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CACAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCG > SRR4302535.361475/1‑94 (MQ=60)
CTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCG > SRR4302535.1560347/1‑94 (MQ=60)
CTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCG < SRR4302535.401723/94‑1 (MQ=60)
TGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGT < SRR4302535.2711848/94‑1 (MQ=60)
TGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGT > SRR4302535.2269517/1‑94 (MQ=60)
TGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGT > SRR4302535.2813136/1‑94 (MQ=60)
TGTTTAAGCGGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCCCCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGT < SRR4302535.827780/94‑1 (MQ=60)
GTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTT > SRR4302535.4371951/1‑94 (MQ=60)
TTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTG < SRR4302535.800305/94‑1 (MQ=60)
TTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTG > SRR4302535.1092810/1‑94 (MQ=60)
TTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTG < SRR4302535.1775216/94‑1 (MQ=60)
TTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGC < SRR4302535.1444240/94‑1 (MQ=60)
TTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGC > SRR4302535.4138481/1‑94 (MQ=60)
AGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGG > SRR4302535.302272/1‑94 (MQ=60)
AGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGG > SRR4302535.3208132/1‑94 (MQ=60)
GCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGG > SRR4302535.2425931/1‑94 (MQ=60)
GCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGC < SRR4302535.1627290/94‑1 (MQ=60)
CTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCG > SRR4302535.899725/1‑94 (MQ=60)
CTGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGCCGCATGACCGCCAGCGTTGCGGGCG > SRR4302535.2483/1‑94 (MQ=60)
TGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGA > SRR4302535.2185392/1‑94 (MQ=60)
TGCTGGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGA > SRR4302535.2719952/1‑94 (MQ=60)
CTGGTGATAGCGAAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATG < SRR4302535.4703631/94‑1 (MQ=60)
CTGGTGATAGCAGAAGAAAGGAGCCGATAGC‑GTGG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATG < SRR4302535.464285/94‑1 (MQ=60)
GGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCG > SRR4302535.2275495/1‑94 (MQ=60)
GGTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGGTGCGGGCGATGCG > SRR4302535.397686/1‑94 (MQ=60)
GGTGATAGCGAAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCG < SRR4302535.1983862/94‑1 (MQ=60)
GTGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGA < SRR4302535.2367264/94‑1 (MQ=60)
TGATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGAT < SRR4302535.3462512/94‑1 (MQ=60)
GATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATG > SRR4302535.3844273/1‑94 (MQ=60)
ATAGGGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGG < SRR4302535.845942/94‑1 (MQ=60)
ATAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGG > SRR4302535.150102/1‑94 (MQ=60)
TAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGA > SRR4302535.4495293/1‑94 (MQ=60)
TAGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGA < SRR4302535.3397292/94‑1 (MQ=60)
AGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCAGCATCTCCGGCACTAAAGCGGGTAGCATGACCGTCAGCGTTGCGAGCGATGCGATGGAT > SRR4302535.18660/1‑94 (MQ=60)
AGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAT > SRR4302535.4357339/1‑94 (MQ=60)
AGCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAT < SRR4302535.2693144/94‑1 (MQ=60)
AGCGGAATAAAGGAGCCGATAGC‑G‑GGTCAAAGCCTCCGTCTCCGGGACTAAAGCGGGTCGCATGACCGCGAGCGTTGCGGGCGATGCGATGGAT < SRR4302535.3841179/94‑1 (MQ=60)
AGCGGAAAAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGAT < SRR4302535.2551890/94‑1 (MQ=60)
GCGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATT < SRR4302535.3552357/94‑1 (MQ=60)
CGGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTT > SRR4302535.2394028/1‑94 (MQ=60)
GGAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTG > SRR4302535.1789858/1‑94 (MQ=60)
GAATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGA > SRR4302535.317156/1‑94 (MQ=60)
ATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATT < SRR4302535.703663/94‑1 (MQ=60)
ATAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATT < SRR4302535.274732/94‑1 (MQ=60)
TAAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTG > SRR4302535.2921298/1‑94 (MQ=60)
AAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGT < SRR4302535.1311880/94‑1 (MQ=60)
AAAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGT > SRR4302535.1058324/1‑94 (MQ=60)
AAGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTC > SRR4302535.2424093/1‑94 (MQ=60)
AGGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCC > SRR4302535.668616/1‑94 (MQ=60)
GGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCT < SRR4302535.1800869/94‑1 (MQ=60)
GGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCT > SRR4302535.3310358/1‑94 (MQ=60)
GGAGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCT < SRR4302535.2953227/94‑1 (MQ=60)
AGCCGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCG < SRR4302535.4014762/94‑1 (MQ=60)
CGATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCT < SRR4302535.52348/94‑1 (MQ=60)
GATAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTG > SRR4302535.1248484/1‑94 (MQ=60)
TAGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTC > SRR4302535.2038152/1‑94 (MQ=60)
AGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCG < SRR4302535.1715465/94‑1 (MQ=60)
AGCGG‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCG > SRR4302535.4268893/1‑94 (MQ=60)
G‑G‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATT < SRR4302535.3056444/94‑1 (MQ=60)
G‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATTT < SRR4302535.3859386/94‑1 (MQ=60)
G‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATTTCA < SRR4302535.3076172/94‑1 (MQ=60)
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TTCCGCGTACATGCGACCGGGGTTAAACACGCCGCAAGGGTCGAGCTGCTGTTTAAGCTGCTGGTGATAGCGGAATAAAGGAGCCGATAGC‑G‑GG‑CAAAGCCACCATCTCCGGCACTAAAGCGGGTCGCATGACCGCCAGCGTTGCGGGCGATGCGATGGATTTGATTGTCCTCGGCTGTCGATTTCA > NC_000913/3123492‑3123678
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
