Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,191,015 G→A G46S (GGT→AGT)  b3051 → putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,191,0150GA99.4% 541.5 / NA 153G46S (GGT→AGT) b3051putative membrane protein
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base A (97/55);  total (97/56)
Fisher's exact test for biased strand distribution p-value = 3.66e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 158 total aligned reads displayed.

ATTATTGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTGGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATACTCT  >  NC_000913/3190925‑3191103
                                                                                          |                                                                                        
 ttattGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGtt                                                                                       <  1:348591/93‑1 (MQ=255)
    ttGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAg                                                                                    <  2:2892254/93‑1 (MQ=255)
        cGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTgg                                                                                >  2:4045708/1‑93 (MQ=255)
         gTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTggg                                                                               >  1:839218/1‑93 (MQ=255)
         gTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTggg                                                                               >  1:927989/1‑93 (MQ=255)
         gTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTggg                                                                               <  1:1463594/93‑1 (MQ=255)
          tATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTgggg                                                                              >  2:3187558/1‑92 (MQ=255)
          tATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGc                                                                              <  1:4030494/93‑1 (MQ=255)
             gCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCaaa                                                                           >  2:4628411/1‑93 (MQ=255)
               aTTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCaaaaa                                                                         <  2:1627135/93‑1 (MQ=255)
                ttCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAg                                                                        >  1:3146047/1‑93 (MQ=255)
                  cTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTg                                                                      >  1:455996/1‑93 (MQ=255)
                  cTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTg                                                                      <  1:2641954/93‑1 (MQ=255)
                   tGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTgg                                                                     >  1:3479040/1‑93 (MQ=255)
                   tGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTgg                                                                     >  1:3127451/1‑93 (MQ=255)
                    gTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGt                                                                    >  1:4053557/1‑93 (MQ=255)
                     tttATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTa                                                                   >  1:2488582/1‑93 (MQ=255)
                      ttattaTTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTaa                                                                  >  2:3202135/1‑93 (MQ=255)
                       tattatTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAAt                                                                 <  2:4303022/93‑1 (MQ=255)
                         ttattGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGa                                                               >  2:4263946/1‑93 (MQ=255)
                         ttattGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGa                                                               >  2:1310941/1‑93 (MQ=255)
                           attGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGc                                                             >  2:2651832/1‑93 (MQ=255)
                           attGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGc                                                             >  1:1217856/1‑93 (MQ=255)
                           attGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGc                                                             >  2:4138649/1‑93 (MQ=255)
                            ttGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCg                                                            >  1:3635736/1‑93 (MQ=255)
                             tGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCgg                                                           >  2:2245777/1‑93 (MQ=255)
                             tGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCgg                                                           >  2:3074811/1‑93 (MQ=255)
                              ggAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCggg                                                          >  2:81494/1‑92 (MQ=255)
                               gAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTg                                                         >  1:1464310/1‑93 (MQ=255)
                               gAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTg                                                         <  1:2549130/93‑1 (MQ=255)
                                aaTTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTgg                                                        >  1:4270261/1‑93 (MQ=255)
                                 attattTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTATGTGGGCAAAAAGGGGTAATGAGCGGTgga                                                       >  2:1404260/1‑92 (MQ=255)
                                 attattTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGgc                                                       >  1:3279972/1‑93 (MQ=255)
                                 attattTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGgc                                                       >  2:2140323/1‑93 (MQ=255)
                                  ttattTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGgcg                                                      >  2:2104027/1‑93 (MQ=255)
                                   tattTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGgcgc                                                     >  1:82680/1‑93 (MQ=255)
                                   tattTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGgcgc                                                     >  1:3069045/1‑93 (MQ=255)
                                      tttCGCCAGGCTCTATCGTGGCGCTTCGGCAGAGCCAGCTTTTGTTCGCAGTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAAt                                                  >  1:1701058/1‑93 (MQ=255)
                                      tttCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAAt                                                  <  2:3482489/93‑1 (MQ=255)
                                         cGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGt                                               <  1:3943197/93‑1 (MQ=255)
                                         cGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGt                                               <  2:1033074/93‑1 (MQ=255)
                                          gCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGGGCAATCGTg                                              >  2:362344/1‑93 (MQ=255)
                                           ccAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGGAAAAAGTGGTAATGAGAGGTGGCGCAATCGTGa                                             >  2:2045652/1‑93 (MQ=255)
                                           ccAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGa                                             >  2:85864/1‑93 (MQ=255)
                                            cAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGAt                                            <  2:2721146/93‑1 (MQ=255)
                                            cAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGAt                                            <  2:1267756/93‑1 (MQ=255)
                                            cAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGAt                                            >  1:4068879/1‑93 (MQ=255)
                                            cAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGAt                                            <  1:1800233/93‑1 (MQ=255)
                                             aGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATg                                           >  2:3999576/1‑93 (MQ=255)
                                              ggCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGc                                          >  1:1285934/1‑93 (MQ=255)
                                               gCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGcc                                         >  2:684218/1‑93 (MQ=255)
                                               gCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGcc                                         <  2:784410/93‑1 (MQ=255)
                                               gCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGcc                                         >  1:2311370/1‑93 (MQ=255)
                                                 tctATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGGGGTAATGAGCGGTGGCGCAATCGTGATGCCGa                                       >  1:364035/1‑93 (MQ=255)
                                                  ctATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGAt                                      >  1:1107114/1‑93 (MQ=255)
                                                  ctATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGAt                                      <  2:2952672/93‑1 (MQ=255)
                                                   tATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATc                                     >  2:2854848/1‑93 (MQ=255)
                                                   tATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATc                                     >  2:2583419/1‑93 (MQ=255)
                                                   tATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATc                                     >  1:3982291/1‑93 (MQ=255)
                                                    aTCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCt                                    <  1:671628/93‑1 (MQ=255)
                                                    aTCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCt                                    >  1:2129187/1‑93 (MQ=255)
                                                    aTCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCt                                    <  2:1425434/93‑1 (MQ=255)
                                                    aTCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCt                                    <  2:4084171/93‑1 (MQ=255)
                                                    aTCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGACGATCt                                    >  2:2812770/1‑93 (MQ=255)
                                                     tcgtcgCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCtt                                   >  1:2379872/1‑93 (MQ=255)
                                                     tcgtcgCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCtt                                   >  1:1762490/1‑93 (MQ=255)
                                                       gtcgCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTc                                 <  2:2841101/93‑1 (MQ=255)
                                                       gtcgCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTc                                 >  2:2713274/1‑93 (MQ=255)
                                                        tcgCGCTTCGGCAGATCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCa                                <  2:3176102/93‑1 (MQ=255)
                                                        tcgCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTGTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCa                                <  2:1767457/93‑1 (MQ=255)
                                                            gcTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGaa                            >  2:2353211/1‑93 (MQ=255)
                                                             cTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGaaa                           <  2:3699931/93‑1 (MQ=255)
                                                              ttCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAaat                          >  1:2900438/1‑93 (MQ=255)
                                                                cGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGAGGTGGCGCAATCGTGATGCCGATCTTTCATGAaataa                        <  2:2337138/93‑1 (MQ=255)
                                                                  gCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATc                      <  2:4300806/93‑1 (MQ=255)
                                                                  gCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATc                      <  1:2326491/93‑1 (MQ=255)
                                                                  gCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATc                      >  2:4630223/1‑93 (MQ=255)
                                                                  gCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATc                      <  1:2263829/93‑1 (MQ=255)
                                                                  gCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATc                      <  2:3328394/93‑1 (MQ=255)
                                                                   cAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATcc                     >  1:1197323/1‑93 (MQ=255)
                                                                     gagCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATcccc                   >  1:3664484/1‑93 (MQ=255)
                                                                     gagCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATcccc                   >  2:604869/1‑93 (MQ=255)
                                                                     gagCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATcccc                   >  2:3084438/1‑93 (MQ=255)
                                                                     gagCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATcccc                   >  2:2964448/1‑93 (MQ=255)
                                                                      agCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCa                  <  1:3066936/93‑1 (MQ=255)
                                                                       gCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCAt                 >  1:438770/1‑93 (MQ=255)
                                                                       gCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCAt                 >  2:798081/1‑93 (MQ=255)
                                                                        cAAGCTTTTGTTCGTACTGGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATc                <  1:1222516/93‑1 (MQ=255)
                                                                          aGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCaa              >  1:4122855/1‑93 (MQ=255)
                                                                           gCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAat             >  1:1014306/1‑93 (MQ=255)
                                                                            cTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAata            <  1:1018664/93‑1 (MQ=255)
                                                                            cTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAata            >  2:1142148/1‑93 (MQ=255)
                                                                                tGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGaa        <  1:1786465/93‑1 (MQ=255)
                                                                                tGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGaa        <  1:508554/93‑1 (MQ=255)
                                                                                tGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGaa        <  1:529484/93‑1 (MQ=255)
                                                                                   tCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATAc     <  2:3824629/93‑1 (MQ=255)
                                                                                     gTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATActc   <  2:4477619/93‑1 (MQ=255)
                                                                                      tACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATActct  <  2:4449664/93‑1 (MQ=255)
                                                                                      tACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATActct  >  1:2904166/1‑93 (MQ=255)
                                                                                      tACTAGTTTAGGGGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCACCATCAATATGAATActct  >  2:2273911/1‑93 (MQ=255)
                                                                                          |                                                                                        
ATTATTGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTGGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATACTCT  >  NC_000913/3190925‑3191103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAATTATTGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTGGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATACTCTGAAGC  >  NC_000913/3190923‑3191108
                                                                                            |                                                                                             
CAATTATTGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAG                                                                                              <  SRR4302535.4096732/94‑1 (MQ=60)
 AATTATTGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGT                                                                                             >  SRR4302535.3782988/1‑94 (MQ=60)
   TTATTGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTT                                                                                           <  SRR4302535.350991/94‑1 (MQ=60)
    TATTGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTA                                                                                          <  SRR4302535.3123420/94‑1 (MQ=60)
       TGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGT                                                                                       <  SRR4302535.2218109/94‑1 (MQ=60)
          CGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTATGCGGG                                                                                    >  SRR4302535.2430415/1‑94 (MQ=60)
          CGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGG                                                                                    >  SRR4302535.934561/1‑94 (MQ=60)
          CGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGG                                                                                    >  SRR4302535.2337088/1‑94 (MQ=60)
          CGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGG                                                                                    >  SRR4302535.845112/1‑94 (MQ=60)
           GTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGC                                                                                   <  SRR4302535.1474079/94‑1 (MQ=60)
           GTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGC                                                                                   >  SRR4302535.1562977/1‑94 (MQ=60)
            TATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCA                                                                                  >  SRR4302535.1860278/1‑94 (MQ=60)
            TATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCA                                                                                  <  SRR4302535.4058069/94‑1 (MQ=60)
             ATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGCTCGTACTAGTTTAGGTGGGCAA                                                                                 >  SRR4302535.3679580/1‑94 (MQ=60)
               GCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAA                                                                               >  SRR4302535.1302904/1‑94 (MQ=60)
               GCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGCTCGTACTAGTTTAGGTGGGCAAAA                                                                               >  SRR4302535.4399905/1‑94 (MQ=60)
                 ATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAG                                                                             >  SRR4302535.1217479/1‑94 (MQ=60)
                 ATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAG                                                                             >  SRR4302535.3156819/1‑94 (MQ=60)
                 ATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAG                                                                             >  SRR4302535.3167925/1‑94 (MQ=60)
                   TCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTG                                                                           >  SRR4302535.459186/1‑94 (MQ=60)
                    CTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAACAGTGG                                                                          >  SRR4302535.486451/1‑94 (MQ=60)
                    CTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGG                                                                          >  SRR4302535.3503212/1‑94 (MQ=60)
                    CTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGG                                                                          >  SRR4302535.3149233/1‑94 (MQ=60)
                    CTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGG                                                                          <  SRR4302535.2660875/94‑1 (MQ=60)
                     TGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGT                                                                         >  SRR4302535.4081315/1‑94 (MQ=60)
                      GTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTA                                                                        >  SRR4302535.2506531/1‑94 (MQ=60)
                          ATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGA                                                                    >  SRR4302535.4084619/1‑94 (MQ=60)
                          ATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGA                                                                    >  SRR4302535.807962/1‑94 (MQ=60)
                            TATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGC                                                                  >  SRR4302535.1226592/1‑94 (MQ=60)
                             ATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCG                                                                 >  SRR4302535.3660932/1‑94 (MQ=60)
                                GGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTG                                                              >  SRR4302535.1474800/1‑94 (MQ=60)
                                 GAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGG                                                             <  SRR4302535.2567475/94‑1 (MQ=60)
                                 GAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGG                                                             >  SRR4302535.4299496/1‑94 (MQ=60)
                                  AATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGC                                                            >  SRR4302535.3302754/1‑94 (MQ=60)
                                   ATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCG                                                           >  SRR4302535.1782190/1‑94 (MQ=60)
                                    TTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGC                                                          >  SRR4302535.83265/1‑94 (MQ=60)
                                    TTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGC                                                          >  SRR4302535.3090481/1‑94 (MQ=60)
                                       TTTTCGCCAGGCTCTATCGTGGCGCTTCGGCAGAGCCAGCTTTTGTTCGCAGTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAAT                                                       >  SRR4302535.1713352/1‑94 (MQ=60)
                                        TTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATC                                                      >  SRR4302535.2543254/1‑94 (MQ=60)
                                           CGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTG                                                   <  SRR4302535.3970116/94‑1 (MQ=60)
                                             CCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGAT                                                 >  SRR4302535.4096726/1‑94 (MQ=60)
                                             CCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGAT                                                 >  SRR4302535.540600/1‑94 (MQ=60)
                                              CAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATG                                                <  SRR4302535.1813246/94‑1 (MQ=60)
                                               AGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGC                                               >  SRR4302535.1295100/1‑94 (MQ=60)
                                                GGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCC                                              >  SRR4302535.2327910/1‑94 (MQ=60)
                                                 GCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGTTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCG                                             <  SRR4302535.3318115/94‑1 (MQ=60)
                                                  CTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGA                                            >  SRR4302535.4118703/1‑94 (MQ=60)
                                                  CTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGGGGTAATGAGCGGTGGCGCAATCGTGATGCCGA                                            >  SRR4302535.366543/1‑94 (MQ=60)
                                                   TCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGAT                                           >  SRR4302535.1115023/1‑94 (MQ=60)
                                                    CTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATC                                          <  SRR4302535.134880/94‑1 (MQ=60)
                                                    CTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATC                                          >  SRR4302535.4009500/1‑94 (MQ=60)
                                                     TATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCT                                         >  SRR4302535.3013439/1‑94 (MQ=60)
                                                     TATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCT                                         >  SRR4302535.2144538/1‑94 (MQ=60)
                                                      ATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTT                                        >  SRR4302535.1775257/1‑94 (MQ=60)
                                                      ATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTT                                        <  SRR4302535.676316/94‑1 (MQ=60)
                                                      ATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTT                                        >  SRR4302535.2396962/1‑94 (MQ=60)
                                                       TCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTT                                       <  SRR4302535.1040202/94‑1 (MQ=60)
                                                               CTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAAT                               >  SRR4302535.2920941/1‑94 (MQ=60)
                                                                TTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATA                              <  SRR4302535.3593661/94‑1 (MQ=60)
                                                                    GCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCC                          <  SRR4302535.2343137/94‑1 (MQ=60)
                                                                    GCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCC                          <  SRR4302535.2279959/94‑1 (MQ=60)
                                                                    GCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCC                          >  SRR4302535.1205896/1‑94 (MQ=60)
                                                                      AGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCC                        >  SRR4302535.3689855/1‑94 (MQ=60)
                                                                        AGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCAT                      >  SRR4302535.441838/1‑94 (MQ=60)
                                                                        AGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCAT                      <  SRR4302535.3088365/94‑1 (MQ=60)
                                                                          CAAGCTTTTGTTCGTACTGGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCA                    <  SRR4302535.1231268/94‑1 (MQ=60)
                                                                           AAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAA                   >  SRR4302535.4151066/1‑94 (MQ=60)
                                                                            AGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAAT                  >  SRR4302535.1021516/1‑94 (MQ=60)
                                                                            AGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAAT                  >  SRR4302535.1294803/1‑94 (MQ=60)
                                                                              CTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATAT                <  SRR4302535.1025901/94‑1 (MQ=60)
                                                                                  TGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAAT            <  SRR4302535.1799390/94‑1 (MQ=60)
                                                                                  TGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAAT            <  SRR4302535.512111/94‑1 (MQ=60)
                                                                                  TGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAAT            <  SRR4302535.533188/94‑1 (MQ=60)
                                                                                  TGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAAT            >  SRR4302535.912912/1‑94 (MQ=60)
                                                                                       GTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATACTCT       <  SRR4302535.4045586/94‑1 (MQ=60)
                                                                                       GTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATACTCT       >  SRR4302535.2924696/1‑94 (MQ=60)
                                                                                       GTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATACTCT       <  SRR4302535.2777525/94‑1 (MQ=60)
                                                                                          CTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATACTCTGAA    <  SRR4302535.1405371/94‑1 (MQ=60)
                                                                                          CTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATACTCTGAA    >  SRR4302535.1186599/1‑94 (MQ=60)
                                                                                          CTAGTTTAGGTGGGCAAAAAGTCGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATACTCTGAA    <  SRR4302535.3809315/94‑1 (MQ=60)
                                                                                            AGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATACTCTGAAGC  >  SRR4302535.110928/1‑94 (MQ=60)
                                                                                            |                                                                                             
CAATTATTGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTGGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATACTCTGAAGC  >  NC_000913/3190923‑3191108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑