Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,262,944 |
G→A |
R242R (CGC→CGT) |
tdcB ← |
threonine dehydratase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,262,944 | 0 | G | A | 99.4%
| 634.9
/ NA
| 178 | R242R (CGC→CGT) | tdcB | threonine dehydratase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (99/78); minor base C (0/1); total (99/79) |
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 192 total aligned reads displayed.
GGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGGCGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAAC > NC_000913/3262854‑3263033
|
ggCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCcggacg > 2:4018140/1‑93 (MQ=255)
aaTCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGga < 1:4189559/93‑1 (MQ=255)
aaTCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGga < 2:4563782/93‑1 (MQ=255)
aaTCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGga < 1:2927963/93‑1 (MQ=255)
aTCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGgag < 1:944452/93‑1 (MQ=255)
tCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGgaga > 2:4411036/1‑93 (MQ=255)
tCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGgaga > 2:1921401/1‑93 (MQ=255)
tCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGgaga < 2:2833715/93‑1 (MQ=255)
cATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGAc < 1:1281016/93‑1 (MQ=255)
aTACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACa < 2:351957/93‑1 (MQ=255)
aTACTGTTTCTGAGTTCGTCTTCGCTGACCAGCACGATGTCATCCACTGATTCACGCACGATTTCGTAAGTTAAATTACCCGGACGGGAGACa > 2:2278965/1‑93 (MQ=255)
tACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACAt > 1:754044/1‑93 (MQ=255)
tACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACAt < 1:2479311/93‑1 (MQ=255)
aCTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATc > 1:3897164/1‑93 (MQ=255)
cTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATca > 1:1509570/1‑93 (MQ=255)
gTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATcaca > 1:1068142/1‑93 (MQ=255)
tttCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACaa < 1:3110374/93‑1 (MQ=255)
ttCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAAc > 2:1466024/1‑93 (MQ=255)
tCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAAcc > 2:3425971/1‑93 (MQ=255)
cTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCa > 2:3184421/1‑93 (MQ=255)
cTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCa < 2:4440347/93‑1 (MQ=255)
cTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCa < 2:4624744/93‑1 (MQ=255)
gATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATc > 2:322642/1‑93 (MQ=255)
gATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATc > 1:2734979/1‑93 (MQ=255)
aTTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATcc < 2:2420314/93‑1 (MQ=255)
aTTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATcc > 1:501415/1‑93 (MQ=255)
tCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGcc > 2:1634709/1‑93 (MQ=255)
tCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACACGGACGGGAGACATCACAACCATCCGcc > 2:3344040/1‑93 (MQ=255)
cGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCa < 2:4432047/93‑1 (MQ=255)
gTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAg < 1:1667951/93‑1 (MQ=255)
gTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAg > 1:3046236/1‑93 (MQ=255)
gTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAg > 2:2790228/1‑93 (MQ=255)
tCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAgg > 2:4644724/1‑93 (MQ=255)
tCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAgg > 2:3150026/1‑93 (MQ=255)
tCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAgg < 2:2317223/93‑1 (MQ=255)
tCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAgg > 1:3669385/1‑93 (MQ=255)
cTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAggg > 1:4325600/1‑93 (MQ=255)
cTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAggg < 2:2378040/93‑1 (MQ=255)
ttCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGt > 2:2014027/1‑93 (MQ=255)
ttCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGt < 2:711594/93‑1 (MQ=255)
tCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTg > 1:187881/1‑93 (MQ=255)
gCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGcc > 2:118696/1‑93 (MQ=255)
gCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGAAATCACAACCATCCGCCAGGCTGcc > 1:1375474/1‑93 (MQ=255)
gcccAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTCCCCGGCCGGGAGACATCACAACCATCCGCCAGGGTGCCGGt < 2:3265209/91‑1 (MQ=255)
gACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGt < 1:3443716/93‑1 (MQ=255)
aCCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTa < 1:1056847/93‑1 (MQ=255)
ccAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAg < 1:428580/93‑1 (MQ=255)
cACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCg > 2:1567671/1‑93 (MQ=255)
aCGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCgg > 2:453734/1‑93 (MQ=255)
aTGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGc > 2:1360414/1‑93 (MQ=255)
aTGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGc > 1:3130961/1‑93 (MQ=255)
gTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCgg > 2:2696213/1‑92 (MQ=255)
tCATCGACTAATTCACGAACGATTTCGTAAGTTTAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTg > 1:3020018/1‑93 (MQ=255)
cATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTgg < 2:776074/93‑1 (MQ=255)
aTCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGt < 1:305604/93‑1 (MQ=255)
tCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGtt > 2:3838720/1‑93 (MQ=255)
tCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGtt > 2:742711/1‑93 (MQ=255)
tCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGtt > 1:329956/1‑93 (MQ=255)
tAATTCCCGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTtc < 2:962088/93‑1 (MQ=255)
aTTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTtctc < 2:1394630/93‑1 (MQ=255)
cACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCgg < 2:3192276/93‑1 (MQ=255)
cACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCgg > 2:3814500/1‑93 (MQ=255)
acgaacgaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGa < 2:4202679/93‑1 (MQ=255)
acgaacgaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGa < 2:4293240/93‑1 (MQ=255)
gaacgaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAgg > 2:2490903/1‑92 (MQ=255)
gaacgaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGt > 2:1643088/1‑93 (MQ=255)
gaacgaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGt < 2:1492715/93‑1 (MQ=255)
gaacgaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGt > 1:2071397/1‑93 (MQ=255)
aacgaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTg > 1:3950768/1‑93 (MQ=255)
gaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGaa > 2:1040397/1‑93 (MQ=255)
gaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGGGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGaa > 1:1570463/1‑93 (MQ=255)
aTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGaaa < 2:4315492/93‑1 (MQ=255)
tttCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGCGGTTATTTCTCCGGAGTGGAaag > 1:1095500/1‑93 (MQ=255)
ttCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaaga < 2:1777052/93‑1 (MQ=255)
ttCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaaga < 1:2343997/93‑1 (MQ=255)
tCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaagaa < 2:2174780/93‑1 (MQ=255)
tCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaagaa < 2:3800002/93‑1 (MQ=255)
cGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaagaag < 2:3918268/93‑1 (MQ=255)
cGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaagaag < 1:3572850/93‑1 (MQ=255)
cGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaagaag < 2:1723332/93‑1 (MQ=255)
cGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaagaag < 1:4491136/93‑1 (MQ=255)
gTAAGTTAAATTCCTCGGACTGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTGCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAgc < 2:2080597/93‑1 (MQ=255)
gTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAgc > 2:930447/1‑93 (MQ=255)
tAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAgcc > 2:4641098/1‑93 (MQ=255)
tAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAgcc < 2:549724/93‑1 (MQ=255)
aGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAgccgc > 1:1196427/1‑93 (MQ=255)
ttAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCa > 1:288786/1‑93 (MQ=255)
tAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCAt > 1:2669106/1‑93 (MQ=255)
tAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCAt > 1:479984/1‑93 (MQ=255)
aaTTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGc > 1:1744024/1‑93 (MQ=255)
ttACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCg > 1:2200172/1‑93 (MQ=255)
aCCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTg > 2:2197493/1‑93 (MQ=255)
aCCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTg > 2:3643511/1‑93 (MQ=255)
aCCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTg < 2:1400035/93‑1 (MQ=255)
cccGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGa > 1:1138663/1‑93 (MQ=255)
cccGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGa > 1:659120/1‑93 (MQ=255)
cccGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGa < 1:1839423/93‑1 (MQ=255)
ccGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGTCGCGATGCCGTGac > 2:4091809/1‑92 (MQ=255)
ccGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGaa < 2:2422334/93‑1 (MQ=255)
cggacgggAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAAc < 1:610591/93‑1 (MQ=255)
|
GGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGGCGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAAC > NC_000913/3262854‑3263033
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGGCGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAACGTT > NC_000913/3262851‑3263036
|
TAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGA > SRR4302535.4648210/1‑94 (MQ=60)
AAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGAC < SRR4302535.372236/94‑1 (MQ=60)
AGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACG < SRR4302535.2792157/94‑1 (MQ=60)
AGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACG > SRR4302535.3096900/1‑94 (MQ=60)
GCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGG < SRR4302535.962336/94‑1 (MQ=60)
AATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAG > SRR4302535.1114049/1‑94 (MQ=60)
AATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAG < SRR4302535.659399/94‑1 (MQ=60)
AATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAG < SRR4302535.4218235/94‑1 (MQ=60)
AATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAG < SRR4302535.2948597/94‑1 (MQ=60)
ATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGA < SRR4302535.951139/94‑1 (MQ=60)
TCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGAC < SRR4302535.2540628/94‑1 (MQ=60)
TCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGAC < SRR4302535.1839557/94‑1 (MQ=60)
CATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACA > SRR4302535.1473225/1‑94 (MQ=60)
CATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACA < SRR4302535.1290158/94‑1 (MQ=60)
ATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACAT < SRR4302535.3687781/94‑1 (MQ=60)
ATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACAT < SRR4302535.4345574/94‑1 (MQ=60)
ATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACAT > SRR4302535.759353/1‑94 (MQ=60)
TACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATC > SRR4302535.3923870/1‑94 (MQ=60)
TACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATC < SRR4302535.2497192/94‑1 (MQ=60)
ACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCA > SRR4302535.1520447/1‑94 (MQ=60)
ACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCA > SRR4302535.3076347/1‑94 (MQ=60)
ACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCA < SRR4302535.2720962/94‑1 (MQ=60)
ACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCA > SRR4302535.2315890/1‑94 (MQ=60)
CTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCAA > SRR4302535.1343324/1‑94 (MQ=60)
TGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACA > SRR4302535.1075737/1‑94 (MQ=60)
GTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAC > SRR4302535.172727/1‑94 (MQ=60)
TTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAAC < SRR4302535.3132029/94‑1 (MQ=60)
TGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATC > SRR4302535.2754493/1‑94 (MQ=60)
GATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCC > SRR4302535.504925/1‑94 (MQ=60)
CGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAG > SRR4302535.3067573/1‑94 (MQ=60)
GTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGG > SRR4302535.3694797/1‑94 (MQ=60)
GTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGG < SRR4302535.1680022/94‑1 (MQ=60)
GTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGG < SRR4302535.3455492/94‑1 (MQ=60)
TCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGG > SRR4302535.4355181/1‑94 (MQ=60)
CTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGT < SRR4302535.347793/94‑1 (MQ=60)
TTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTG < SRR4302535.679307/94‑1 (MQ=60)
TTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTG < SRR4302535.495598/94‑1 (MQ=60)
TTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTG > SRR4302535.189181/1‑94 (MQ=60)
CGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGAAATCACAACCATCCGCCAGGCTGCC > SRR4302535.1385300/1‑94 (MQ=60)
TGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGT < SRR4302535.2186652/94‑1 (MQ=60)
GACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTA < SRR4302535.4123847/94‑1 (MQ=60)
GACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTA < SRR4302535.3467665/94‑1 (MQ=60)
ACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAG < SRR4302535.1064360/94‑1 (MQ=60)
CCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGT < SRR4302535.431560/94‑1 (MQ=60)
CAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTT > SRR4302535.2875612/1‑94 (MQ=60)
CAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTT > SRR4302535.816667/1‑94 (MQ=60)
CACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGG < SRR4302535.1187254/94‑1 (MQ=60)
GATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGC > SRR4302535.3152768/1‑94 (MQ=60)
GTCATCGACTAATTCACGAACGATTTCGTAAGTTTAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTG > SRR4302535.3041169/1‑94 (MQ=60)
CATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGT > SRR4302535.3146533/1‑94 (MQ=60)
ATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTT > SRR4302535.332243/1‑94 (MQ=60)
ATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTT < SRR4302535.307722/94‑1 (MQ=60)
CGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTAT > SRR4302535.1874406/1‑94 (MQ=60)
CTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTC > SRR4302535.305333/1‑94 (MQ=60)
ATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCC > SRR4302535.1592974/1‑94 (MQ=60)
CGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGT > SRR4302535.2086324/1‑94 (MQ=60)
GAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTG > SRR4302535.3977743/1‑94 (MQ=60)
GAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTG < SRR4302535.1520922/94‑1 (MQ=60)
CGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGGGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAA > SRR4302535.1581801/1‑94 (MQ=60)
ATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGCGGTTATTTCTCCGGAGTGGAAAG > SRR4302535.1103295/1‑94 (MQ=60)
TTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAA < SRR4302535.2360768/94‑1 (MQ=60)
CGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGC < SRR4302535.4521965/94‑1 (MQ=60)
CGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGC < SRR4302535.3597627/94‑1 (MQ=60)
GTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCC < SRR4302535.3844999/94‑1 (MQ=60)
AAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGC > SRR4302535.1204997/1‑94 (MQ=60)
AGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCC < SRR4302535.4669914/94‑1 (MQ=60)
GTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCA > SRR4302535.290808/1‑94 (MQ=60)
TTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCAT > SRR4302535.2688207/1‑94 (MQ=60)
TTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCAT > SRR4302535.483352/1‑94 (MQ=60)
TAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATG < SRR4302535.10771/94‑1 (MQ=60)
AAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGC > SRR4302535.1756643/1‑94 (MQ=60)
AAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGC > SRR4302535.2935080/1‑94 (MQ=60)
AATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCC < SRR4302535.4249095/94‑1 (MQ=60)
AATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCC > SRR4302535.4507956/1‑94 (MQ=60)
ATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCG > SRR4302535.3026307/1‑94 (MQ=60)
ATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCG > SRR4302535.2215857/1‑94 (MQ=60)
ATAACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCG < SRR4302535.2438574/94‑1 (MQ=60)
ACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGA > SRR4302535.1146780/1‑94 (MQ=60)
ACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGA > SRR4302535.663718/1‑94 (MQ=60)
ACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGA > SRR4302535.1238741/1‑94 (MQ=60)
CCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAA < SRR4302535.1852690/94‑1 (MQ=60)
CCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAAC < SRR4302535.397593/94‑1 (MQ=60)
CGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAACG < SRR4302535.614844/94‑1 (MQ=60)
GACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAACGTT < SRR4302535.4641133/94‑1 (MQ=60)
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TAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGGCGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAACGTT > NC_000913/3262851‑3263036
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |