Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,262,944 G→A R242R (CGC→CGT tdcB ← threonine dehydratase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,262,9440GA99.4% 634.9 / NA 178R242R (CGC→CGTtdcBthreonine dehydratase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (99/78);  minor base C (0/1);  total (99/79)
Fisher's exact test for biased strand distribution p-value = 4.44e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 192 total aligned reads displayed.

GGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGGCGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAAC  >  NC_000913/3262854‑3263033
                                                                                          |                                                                                         
ggCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCcggacg                                                                                         >  2:4018140/1‑93 (MQ=255)
   aaTCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGga                                                                                      <  1:4189559/93‑1 (MQ=255)
   aaTCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGga                                                                                      <  2:4563782/93‑1 (MQ=255)
   aaTCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGga                                                                                      <  1:2927963/93‑1 (MQ=255)
    aTCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGgag                                                                                     <  1:944452/93‑1 (MQ=255)
     tCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGgaga                                                                                    >  2:4411036/1‑93 (MQ=255)
     tCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGgaga                                                                                    >  2:1921401/1‑93 (MQ=255)
     tCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGgaga                                                                                    <  2:2833715/93‑1 (MQ=255)
      cATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGAc                                                                                   <  1:1281016/93‑1 (MQ=255)
       aTACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACa                                                                                  <  2:351957/93‑1 (MQ=255)
       aTACTGTTTCTGAGTTCGTCTTCGCTGACCAGCACGATGTCATCCACTGATTCACGCACGATTTCGTAAGTTAAATTACCCGGACGGGAGACa                                                                                  >  2:2278965/1‑93 (MQ=255)
        tACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACAt                                                                                 >  1:754044/1‑93 (MQ=255)
        tACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACAt                                                                                 <  1:2479311/93‑1 (MQ=255)
         aCTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATc                                                                                >  1:3897164/1‑93 (MQ=255)
          cTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATca                                                                               >  1:1509570/1‑93 (MQ=255)
            gTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATcaca                                                                             >  1:1068142/1‑93 (MQ=255)
             tttCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACaa                                                                            <  1:3110374/93‑1 (MQ=255)
              ttCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAAc                                                                           >  2:1466024/1‑93 (MQ=255)
               tCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAAcc                                                                          >  2:3425971/1‑93 (MQ=255)
                cTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCa                                                                         >  2:3184421/1‑93 (MQ=255)
                cTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCa                                                                         <  2:4440347/93‑1 (MQ=255)
                cTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCa                                                                         <  2:4624744/93‑1 (MQ=255)
                  gATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATc                                                                       >  2:322642/1‑93 (MQ=255)
                  gATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATc                                                                       >  1:2734979/1‑93 (MQ=255)
                   aTTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATcc                                                                      <  2:2420314/93‑1 (MQ=255)
                   aTTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATcc                                                                      >  1:501415/1‑93 (MQ=255)
                      tCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGcc                                                                   >  2:1634709/1‑93 (MQ=255)
                      tCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACACGGACGGGAGACATCACAACCATCCGcc                                                                   >  2:3344040/1‑93 (MQ=255)
                       cGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCa                                                                  <  2:4432047/93‑1 (MQ=255)
                        gTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAg                                                                 <  1:1667951/93‑1 (MQ=255)
                        gTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAg                                                                 >  1:3046236/1‑93 (MQ=255)
                        gTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAg                                                                 >  2:2790228/1‑93 (MQ=255)
                         tCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAgg                                                                >  2:4644724/1‑93 (MQ=255)
                         tCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAgg                                                                >  2:3150026/1‑93 (MQ=255)
                         tCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAgg                                                                <  2:2317223/93‑1 (MQ=255)
                         tCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAgg                                                                >  1:3669385/1‑93 (MQ=255)
                          cTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAggg                                                               >  1:4325600/1‑93 (MQ=255)
                          cTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAggg                                                               <  2:2378040/93‑1 (MQ=255)
                           ttCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGt                                                              >  2:2014027/1‑93 (MQ=255)
                           ttCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGt                                                              <  2:711594/93‑1 (MQ=255)
                            tCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTg                                                             >  1:187881/1‑93 (MQ=255)
                              gCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGcc                                                           >  2:118696/1‑93 (MQ=255)
                              gCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGAAATCACAACCATCCGCCAGGCTGcc                                                           >  1:1375474/1‑93 (MQ=255)
                                 gcccAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTCCCCGGCCGGGAGACATCACAACCATCCGCCAGGGTGCCGGt                                                        <  2:3265209/91‑1 (MQ=255)
                                 gACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGt                                                        <  1:3443716/93‑1 (MQ=255)
                                  aCCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTa                                                       <  1:1056847/93‑1 (MQ=255)
                                   ccAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAg                                                      <  1:428580/93‑1 (MQ=255)
                                       cACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCg                                                  >  2:1567671/1‑93 (MQ=255)
                                        aCGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCgg                                                 >  2:453734/1‑93 (MQ=255)
                                           aTGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGc                                              >  2:1360414/1‑93 (MQ=255)
                                           aTGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGc                                              >  1:3130961/1‑93 (MQ=255)
                                             gTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCgg                                            >  2:2696213/1‑92 (MQ=255)
                                              tCATCGACTAATTCACGAACGATTTCGTAAGTTTAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTg                                           >  1:3020018/1‑93 (MQ=255)
                                               cATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTgg                                          <  2:776074/93‑1 (MQ=255)
                                                aTCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGt                                         <  1:305604/93‑1 (MQ=255)
                                                 tCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGtt                                        >  2:3838720/1‑93 (MQ=255)
                                                 tCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGtt                                        >  2:742711/1‑93 (MQ=255)
                                                 tCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGtt                                        >  1:329956/1‑93 (MQ=255)
                                                      tAATTCCCGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTtc                                   <  2:962088/93‑1 (MQ=255)
                                                        aTTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTtctc                                 <  2:1394630/93‑1 (MQ=255)
                                                           cACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCgg                              <  2:3192276/93‑1 (MQ=255)
                                                           cACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCgg                              >  2:3814500/1‑93 (MQ=255)
                                                            acgaacgaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGa                             <  2:4202679/93‑1 (MQ=255)
                                                            acgaacgaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGa                             <  2:4293240/93‑1 (MQ=255)
                                                              gaacgaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAgg                           >  2:2490903/1‑92 (MQ=255)
                                                              gaacgaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGt                           >  2:1643088/1‑93 (MQ=255)
                                                              gaacgaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGt                           <  2:1492715/93‑1 (MQ=255)
                                                              gaacgaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGt                           >  1:2071397/1‑93 (MQ=255)
                                                               aacgaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTg                          >  1:3950768/1‑93 (MQ=255)
                                                                  gaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGaa                       >  2:1040397/1‑93 (MQ=255)
                                                                  gaTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGGGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGaa                       >  1:1570463/1‑93 (MQ=255)
                                                                   aTTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGaaa                      <  2:4315492/93‑1 (MQ=255)
                                                                    tttCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGCGGTTATTTCTCCGGAGTGGAaag                     >  1:1095500/1‑93 (MQ=255)
                                                                     ttCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaaga                    <  2:1777052/93‑1 (MQ=255)
                                                                     ttCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaaga                    <  1:2343997/93‑1 (MQ=255)
                                                                      tCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaagaa                   <  2:2174780/93‑1 (MQ=255)
                                                                      tCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaagaa                   <  2:3800002/93‑1 (MQ=255)
                                                                       cGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaagaag                  <  2:3918268/93‑1 (MQ=255)
                                                                       cGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaagaag                  <  1:3572850/93‑1 (MQ=255)
                                                                       cGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaagaag                  <  2:1723332/93‑1 (MQ=255)
                                                                       cGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAaagaag                  <  1:4491136/93‑1 (MQ=255)
                                                                        gTAAGTTAAATTCCTCGGACTGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTGCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAgc                 <  2:2080597/93‑1 (MQ=255)
                                                                        gTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAgc                 >  2:930447/1‑93 (MQ=255)
                                                                         tAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAgcc                >  2:4641098/1‑93 (MQ=255)
                                                                         tAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAgcc                <  2:549724/93‑1 (MQ=255)
                                                                           aGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAgccgc              >  1:1196427/1‑93 (MQ=255)
                                                                             ttAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCa            >  1:288786/1‑93 (MQ=255)
                                                                              tAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCAt           >  1:2669106/1‑93 (MQ=255)
                                                                              tAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCAt           >  1:479984/1‑93 (MQ=255)
                                                                                aaTTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGc         >  1:1744024/1‑93 (MQ=255)
                                                                                  ttACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCg       >  1:2200172/1‑93 (MQ=255)
                                                                                    aCCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTg     >  2:2197493/1‑93 (MQ=255)
                                                                                    aCCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTg     >  2:3643511/1‑93 (MQ=255)
                                                                                    aCCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTg     <  2:1400035/93‑1 (MQ=255)
                                                                                     cccGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGa    >  1:1138663/1‑93 (MQ=255)
                                                                                     cccGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGa    >  1:659120/1‑93 (MQ=255)
                                                                                     cccGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGa    <  1:1839423/93‑1 (MQ=255)
                                                                                      ccGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGTCGCGATGCCGTGa  >  2:4091809/1‑92 (MQ=255)
                                                                                      ccGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGaa   <  2:2422334/93‑1 (MQ=255)
                                                                                       cggacgggAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAAc  <  1:610591/93‑1 (MQ=255)
                                                                                          |                                                                                         
GGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGGCGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAAC  >  NC_000913/3262854‑3263033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGGCGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAACGTT  >  NC_000913/3262851‑3263036
                                                                                             |                                                                                            
TAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGA                                                                                              >  SRR4302535.4648210/1‑94 (MQ=60)
 AAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGAC                                                                                             <  SRR4302535.372236/94‑1 (MQ=60)
  AGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACG                                                                                            <  SRR4302535.2792157/94‑1 (MQ=60)
  AGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACG                                                                                            >  SRR4302535.3096900/1‑94 (MQ=60)
    GCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGG                                                                                          <  SRR4302535.962336/94‑1 (MQ=60)
      AATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAG                                                                                        >  SRR4302535.1114049/1‑94 (MQ=60)
      AATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAG                                                                                        <  SRR4302535.659399/94‑1 (MQ=60)
      AATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAG                                                                                        <  SRR4302535.4218235/94‑1 (MQ=60)
      AATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAG                                                                                        <  SRR4302535.2948597/94‑1 (MQ=60)
       ATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGA                                                                                       <  SRR4302535.951139/94‑1 (MQ=60)
        TCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGAC                                                                                      <  SRR4302535.2540628/94‑1 (MQ=60)
        TCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGAC                                                                                      <  SRR4302535.1839557/94‑1 (MQ=60)
         CATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACA                                                                                     >  SRR4302535.1473225/1‑94 (MQ=60)
         CATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACA                                                                                     <  SRR4302535.1290158/94‑1 (MQ=60)
          ATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACAT                                                                                    <  SRR4302535.3687781/94‑1 (MQ=60)
          ATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACAT                                                                                    <  SRR4302535.4345574/94‑1 (MQ=60)
          ATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACAT                                                                                    >  SRR4302535.759353/1‑94 (MQ=60)
           TACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATC                                                                                   >  SRR4302535.3923870/1‑94 (MQ=60)
           TACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATC                                                                                   <  SRR4302535.2497192/94‑1 (MQ=60)
            ACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCA                                                                                  >  SRR4302535.1520447/1‑94 (MQ=60)
            ACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCA                                                                                  >  SRR4302535.3076347/1‑94 (MQ=60)
            ACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCA                                                                                  <  SRR4302535.2720962/94‑1 (MQ=60)
            ACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCA                                                                                  >  SRR4302535.2315890/1‑94 (MQ=60)
             CTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCAA                                                                                 >  SRR4302535.1343324/1‑94 (MQ=60)
              TGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACA                                                                                >  SRR4302535.1075737/1‑94 (MQ=60)
               GTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAC                                                                               >  SRR4302535.172727/1‑94 (MQ=60)
                TTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAAC                                                                              <  SRR4302535.3132029/94‑1 (MQ=60)
                    TGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATC                                                                          >  SRR4302535.2754493/1‑94 (MQ=60)
                     GATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCC                                                                         >  SRR4302535.504925/1‑94 (MQ=60)
                          CGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAG                                                                    >  SRR4302535.3067573/1‑94 (MQ=60)
                           GTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGG                                                                   >  SRR4302535.3694797/1‑94 (MQ=60)
                           GTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGG                                                                   <  SRR4302535.1680022/94‑1 (MQ=60)
                           GTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGG                                                                   <  SRR4302535.3455492/94‑1 (MQ=60)
                            TCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGG                                                                  >  SRR4302535.4355181/1‑94 (MQ=60)
                             CTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGT                                                                 <  SRR4302535.347793/94‑1 (MQ=60)
                              TTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTG                                                                <  SRR4302535.679307/94‑1 (MQ=60)
                              TTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTG                                                                <  SRR4302535.495598/94‑1 (MQ=60)
                              TTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTG                                                                >  SRR4302535.189181/1‑94 (MQ=60)
                                CGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGAAATCACAACCATCCGCCAGGCTGCC                                                              >  SRR4302535.1385300/1‑94 (MQ=60)
                                   TGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGT                                                           <  SRR4302535.2186652/94‑1 (MQ=60)
                                    GACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTA                                                          <  SRR4302535.4123847/94‑1 (MQ=60)
                                    GACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTA                                                          <  SRR4302535.3467665/94‑1 (MQ=60)
                                     ACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAG                                                         <  SRR4302535.1064360/94‑1 (MQ=60)
                                      CCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGT                                                        <  SRR4302535.431560/94‑1 (MQ=60)
                                       CAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTT                                                       >  SRR4302535.2875612/1‑94 (MQ=60)
                                       CAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTT                                                       >  SRR4302535.816667/1‑94 (MQ=60)
                                          CACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGG                                                    <  SRR4302535.1187254/94‑1 (MQ=60)
                                             GATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGC                                                 >  SRR4302535.3152768/1‑94 (MQ=60)
                                                GTCATCGACTAATTCACGAACGATTTCGTAAGTTTAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTG                                              >  SRR4302535.3041169/1‑94 (MQ=60)
                                                  CATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGT                                            >  SRR4302535.3146533/1‑94 (MQ=60)
                                                   ATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTT                                           >  SRR4302535.332243/1‑94 (MQ=60)
                                                   ATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTT                                           <  SRR4302535.307722/94‑1 (MQ=60)
                                                     CGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTAT                                         >  SRR4302535.1874406/1‑94 (MQ=60)
                                                        CTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTC                                      >  SRR4302535.305333/1‑94 (MQ=60)
                                                           ATTCACGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCC                                   >  SRR4302535.1592974/1‑94 (MQ=60)
                                                                CGAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGT                              >  SRR4302535.2086324/1‑94 (MQ=60)
                                                                 GAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTG                             >  SRR4302535.3977743/1‑94 (MQ=60)
                                                                 GAACGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTG                             <  SRR4302535.1520922/94‑1 (MQ=60)
                                                                    CGATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGGGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAA                          >  SRR4302535.1581801/1‑94 (MQ=60)
                                                                      ATTTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGCGGTTATTTCTCCGGAGTGGAAAG                        >  SRR4302535.1103295/1‑94 (MQ=60)
                                                                        TTCGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAA                      <  SRR4302535.2360768/94‑1 (MQ=60)
                                                                          CGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGC                    <  SRR4302535.4521965/94‑1 (MQ=60)
                                                                          CGTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGC                    <  SRR4302535.3597627/94‑1 (MQ=60)
                                                                           GTAAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCC                   <  SRR4302535.3844999/94‑1 (MQ=60)
                                                                             AAGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGC                 >  SRR4302535.1204997/1‑94 (MQ=60)
                                                                              AGTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCC                <  SRR4302535.4669914/94‑1 (MQ=60)
                                                                               GTTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCA               >  SRR4302535.290808/1‑94 (MQ=60)
                                                                                TTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCAT              >  SRR4302535.2688207/1‑94 (MQ=60)
                                                                                TTAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCAT              >  SRR4302535.483352/1‑94 (MQ=60)
                                                                                 TAAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATG             <  SRR4302535.10771/94‑1 (MQ=60)
                                                                                  AAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGC            >  SRR4302535.1756643/1‑94 (MQ=60)
                                                                                  AAATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGC            >  SRR4302535.2935080/1‑94 (MQ=60)
                                                                                   AATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCC           <  SRR4302535.4249095/94‑1 (MQ=60)
                                                                                   AATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCC           >  SRR4302535.4507956/1‑94 (MQ=60)
                                                                                    ATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCG          >  SRR4302535.3026307/1‑94 (MQ=60)
                                                                                    ATTACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCG          >  SRR4302535.2215857/1‑94 (MQ=60)
                                                                                    ATAACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCG          <  SRR4302535.2438574/94‑1 (MQ=60)
                                                                                       ACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGA       >  SRR4302535.1146780/1‑94 (MQ=60)
                                                                                       ACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGA       >  SRR4302535.663718/1‑94 (MQ=60)
                                                                                       ACCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGA       >  SRR4302535.1238741/1‑94 (MQ=60)
                                                                                        CCCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAA      <  SRR4302535.1852690/94‑1 (MQ=60)
                                                                                         CCGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAAC     <  SRR4302535.397593/94‑1 (MQ=60)
                                                                                          CGGACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAACG    <  SRR4302535.614844/94‑1 (MQ=60)
                                                                                            GACGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAACGTT  <  SRR4302535.4641133/94‑1 (MQ=60)
                                                                                             |                                                                                            
TAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAATTACCCGGGCGGGAGACATCACAACCATCCGCCAGGGTGCCGGTAGTTCGGTGCGTGGTTATTTCTCCGGAGTGGAAAGAAGCCGCCATGCCGTGAACGTT  >  NC_000913/3262851‑3263036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: