Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,263,134	A→G	V179A (GTG→GCG)	tdcB ←	threonine dehydratase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,263,134	0	A	G	100.0%	741.2 / NA	232	V179A (GTG→GCG)	tdcB	threonine dehydratase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (109/123); total (109/123)

Only 100 of 241 total aligned reads displayed.

TGTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCACGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGGTGGGATA  >  NC_000913/3263044‑3263223

tGTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATcgcg                                                                                         >  2:276093/1‑93 (MQ=255)

tGTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATcgcg                                                                                         >  2:2600587/1‑93 (MQ=255)

   aCGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTa                                                                                      <  1:1455364/93‑1 (MQ=255)

    cGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTAt                                                                                     <  2:1581558/93‑1 (MQ=255)

    cGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTAt                                                                                     <  2:1860986/93‑1 (MQ=255)

     gCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATc                                                                                    <  2:278728/93‑1 (MQ=255)

     gCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATc                                                                                    <  1:4277199/93‑1 (MQ=255)

     gCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATc                                                                                    <  2:44619/93‑1 (MQ=255)

       cAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGa                                                                                  >  2:4301902/1‑93 (MQ=255)

       cAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGa                                                                                  >  1:3533636/1‑93 (MQ=255)

        aaTAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGAc                                                                                 <  2:564771/93‑1 (MQ=255)

         aTAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGAca                                                                                >  2:3144653/1‑93 (MQ=255)

         aTAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGAca                                                                                <  1:2490903/93‑1 (MQ=255)

         aTAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGAca                                                                                >  1:2288405/1‑93 (MQ=255)

         aTAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGAca                                                                                <  1:1538406/93‑1 (MQ=255)

         aTAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGAca                                                                                <  1:4492695/93‑1 (MQ=255)

          tAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGAcat                                                                               >  2:3328706/1‑93 (MQ=255)

           aaCACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGAcatc                                                                              >  1:555758/1‑93 (MQ=255)

            acacGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGAcatca                                                                             <  2:1627096/93‑1 (MQ=255)

            acacGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGAcatca                                                                             <  1:1040397/93‑1 (MQ=255)

            acacGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGAcatca                                                                             <  1:1378907/93‑1 (MQ=255)

             cacGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGAcatcat                                                                            >  1:1961489/1‑93 (MQ=255)

             cacGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGAcatcat                                                                            <  1:1066173/93‑1 (MQ=255)

             cacGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGAcatcat                                                                            <  2:3922462/93‑1 (MQ=255)

                gAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATaga                                                                         >  1:4093374/1‑93 (MQ=255)

                gAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATaga                                                                         <  2:2669106/93‑1 (MQ=255)

                  aTGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAgaga                                                                       <  1:1004179/93‑1 (MQ=255)

                  aTGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAgaga                                                                       >  2:3564284/1‑93 (MQ=255)

                    ggTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATc                                                                     <  1:322642/93‑1 (MQ=255)

                     gTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCt                                                                    <  1:2130953/93‑1 (MQ=255)

                     gTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCt                                                                    >  1:996087/1‑93 (MQ=255)

                     gTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCt                                                                    <  1:3467003/93‑1 (MQ=255)

                       cGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTc                                                                  >  1:1634632/1‑93 (MQ=255)

                        gggTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTcc                                                                 <  2:1710139/93‑1 (MQ=255)

                         ggTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCa                                                                >  2:2240306/1‑93 (MQ=255)

                         ggTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCa                                                                <  2:1027711/93‑1 (MQ=255)

                          gTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCAt                                                               >  1:1634775/1‑93 (MQ=255)

                           ttAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATa                                                              >  2:3796475/1‑93 (MQ=255)

                            tAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATaa                                                             <  2:1812268/93‑1 (MQ=255)

                            tAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATaa                                                             <  2:2980881/93‑1 (MQ=255)

                             aaTAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAAt                                                            <  1:2976905/93‑1 (MQ=255)

                             aaTAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAAt                                                            <  1:1259826/93‑1 (MQ=255)

                             aaTAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAAt                                                            >  1:2021215/1‑93 (MQ=255)

                              aTAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAAtt                                                           <  1:4642019/93‑1 (MQ=255)

                              aTAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAAtt                                                           <  1:2266914/93‑1 (MQ=255)

                                aGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTc                                                         <  1:1823680/93‑1 (MQ=255)

                                 gATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTcc                                                        >  2:704901/1‑93 (MQ=255)

                                  aTTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCa                                                       <  1:2385545/93‑1 (MQ=255)

                                  aTTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCa                                                       >  1:4050074/1‑93 (MQ=255)

                                  aTTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCa                                                       <  2:1462747/93‑1 (MQ=255)

                                      aaTTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGAcc                                                   >  2:1952881/1‑93 (MQ=255)

                                       aTTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCa                                                  <  2:303226/93‑1 (MQ=255)

                                        ttGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCaa                                                 <  1:4388695/93‑1 (MQ=255)

                                         tGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAAt                                                <  2:4616834/93‑1 (MQ=255)

                                          gCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATc                                               <  1:1613083/93‑1 (MQ=255)

                                          gCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATc                                               >  2:763449/1‑93 (MQ=255)

                                           ccACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCg                                              <  2:3421671/93‑1 (MQ=255)

                                            cACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGt                                             <  1:3077816/93‑1 (MQ=255)

                                            cACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGt                                             <  1:902941/93‑1 (MQ=255)

                                            cACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATAGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGt                                             >  1:586341/1‑93 (MQ=255)

                                             aCCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGtt                                            >  2:1102752/1‑93 (MQ=255)

                                             aCCGCAATACCAGCAATTAAACCGACACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAACTTCCAGACCAATCGtt                                            >  2:483175/1‑93 (MQ=255)

                                              ccGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTc                                           <  2:1723633/93‑1 (MQ=255)

                                              ccGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTc                                           >  2:1996962/1‑93 (MQ=255)

                                               cGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTcc                                          <  1:1567671/93‑1 (MQ=255)

                                                gCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTccc                                         <  1:4165693/93‑1 (MQ=255)

                                                 cAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCt                                        <  1:257421/93‑1 (MQ=255)

                                                 cAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCt                                        <  2:1279939/93‑1 (MQ=255)

                                                  aaTACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTg                                       <  1:3925687/93‑1 (MQ=255)

                                                   aTACCAGCAATTAAACCGCTACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTgg                                      >  2:4554960/1‑93 (MQ=255)

                                                   aTACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTgg                                      <  2:3669385/93‑1 (MQ=255)

                                                    tACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGc                                     <  1:3349796/93‑1 (MQ=255)

                                                      ccAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCa                                   >  2:208149/1‑93 (MQ=255)

                                                      ccAGCAATTAAACCG‑CACCACCCATTGGCACCATCGCGTTAACGGCAACATAGATATTTTTCATAAATTTCAGACCAATCGTTCCCTGGGCaa                                  >  2:4419549/1‑92 (MQ=255)

                                                        aGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGc                                 <  2:4111382/93‑1 (MQ=255)

                                                           aaTTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAAt                              <  2:897456/93‑1 (MQ=255)

                                                            aTTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATc                             >  1:2278746/1‑93 (MQ=255)

                                                             ttAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTc                                                         <  1:1922515/64‑1 (MQ=255)

                                                               aaaCCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACt                          >  1:4526961/1‑93 (MQ=255)

                                                                 aCCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACttt                        <  1:2770051/93‑1 (MQ=255)

                                                                 aCCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACttt                        <  1:3810692/93‑1 (MQ=255)

                                                                 aCCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACttt                        <  1:1180039/93‑1 (MQ=255)

                                                                 aCCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACttt                        <  1:1403060/93‑1 (MQ=255)

                                                                  ccGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTc                       >  2:2903767/1‑93 (MQ=255)

                                                                    gCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCgg                     >  2:2331101/1‑93 (MQ=255)

                                                                    gCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCgg                     <  2:2200172/93‑1 (MQ=255)

                                                                     ccaccaccaATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGa                    >  1:1759010/1‑93 (MQ=255)

                                                                     ccaccaccaATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGa                    <  2:1879829/93‑1 (MQ=255)

                                                                      caccaccaATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGat                   <  1:3616356/93‑1 (MQ=255)

                                                                        ccaccaATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGatca                 <  2:3124771/93‑1 (MQ=255)

                                                                          accaATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGatcatc               <  1:2696213/93‑1 (MQ=255)

                                                                            caATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGt             >  2:2496977/1‑93 (MQ=255)

                                                                              aTTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTaa           >  1:750520/1‑93 (MQ=255)

                                                                              aTTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTaa           <  1:3966150/93‑1 (MQ=255)

                                                                              aTTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTaa           >  2:1380972/1‑93 (MQ=255)

                                                                               ttGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAg          <  1:929367/93‑1 (MQ=255)

                                                                                 ggCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGGt        <  1:73396/93‑1 (MQ=255)

                                                                                    acaATCGCGTTATCGACATCATAGAGATCTTGCATAATTGCCAGAGCAATCGATCCCTGGCCAGCAAGCACTTTCGGATCATCGTAAGGTggg     <  2:2682222/93‑1 (MQ=255)

                                                                                     caATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGGTGGGa    <  2:981754/93‑1 (MQ=255)

                                                                                      aaTCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGGTGGGAt   >  2:768109/1‑93 (MQ=255)

TGTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCACGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGGTGGGATA  >  NC_000913/3263044‑3263223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GACTGTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCACGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGGTGGGATA  >  NC_000913/3263041‑3263223

GACTGTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCG                                                                                           >  SRR4302535.3599737/1‑94 (MQ=60)

GACTGTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCG                                                                                           <  SRR4302535.672775/94‑1 (MQ=60)

GACTGTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCG                                                                                           >  SRR4302535.2145024/1‑94 (MQ=60)

GACTGTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCG                                                                                           <  SRR4302535.3449795/94‑1 (MQ=60)

GACTGTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCG                                                                                           >  SRR4302535.3016890/1‑94 (MQ=60)

 ACTGTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGC                                                                                          <  SRR4302535.686116/94‑1 (MQ=60)

  CTGTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCG                                                                                         >  SRR4302535.4105813/1‑94 (MQ=60)

    GTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTT                                                                                       <  SRR4302535.2619223/94‑1 (MQ=60)

    GTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTT                                                                                       >  SRR4302535.1049534/1‑94 (MQ=60)

    GTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTT                                                                                       <  SRR4302535.2799383/94‑1 (MQ=60)

    GTACGCCAATAACACGAATGGGCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTT                                                                                       >  SRR4302535.1974247/1‑94 (MQ=60)

     TACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTA                                                                                      <  SRR4302535.747926/94‑1 (MQ=60)

      ACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTAT                                                                                     <  SRR4302535.1465778/94‑1 (MQ=60)

        GCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCG                                                                                   <  SRR4302535.4306472/94‑1 (MQ=60)

         CCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGA                                                                                  >  SRR4302535.3558169/1‑94 (MQ=60)

         CCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGA                                                                                  >  SRR4302535.1212267/1‑94 (MQ=60)

           AATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACA                                                                                >  SRR4302535.2304751/1‑94 (MQ=60)

           AATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACA                                                                                >  SRR4302535.4004011/1‑94 (MQ=60)

            ATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACAT                                                                               <  SRR4302535.2508872/94‑1 (MQ=60)

            ATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACAT                                                                               <  SRR4302535.1370145/94‑1 (MQ=60)

            ATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACAT                                                                               <  SRR4302535.4523532/94‑1 (MQ=60)

            ATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACAT                                                                               <  SRR4302535.1549493/94‑1 (MQ=60)

            ATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACAT                                                                               >  SRR4302535.1975831/1‑94 (MQ=60)

             TAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATC                                                                              >  SRR4302535.559653/1‑94 (MQ=60)

             TAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATC                                                                              <  SRR4302535.188880/94‑1 (MQ=60)

             TAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATC                                                                              <  SRR4302535.4537406/94‑1 (MQ=60)

              AACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAATCCGCCACCACCAATTGGCACAATCGCGTTATCGACATCA                                                                             <  SRR4302535.597689/94‑1 (MQ=60)

               ACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCAT                                                                            <  SRR4302535.229043/94‑1 (MQ=60)

               ACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCAT                                                                            >  SRR4302535.4063868/1‑94 (MQ=60)

               ACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCAT                                                                            <  SRR4302535.1047777/94‑1 (MQ=60)

               ACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCAT                                                                            >  SRR4302535.1975633/1‑94 (MQ=60)

               ACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCAT                                                                            <  SRR4302535.1500051/94‑1 (MQ=60)

               ACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCAT                                                                            >  SRR4302535.2355008/1‑94 (MQ=60)

               ACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCAT                                                                            <  SRR4302535.1388742/94‑1 (MQ=60)

                CACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATA                                                                           <  SRR4302535.1073757/94‑1 (MQ=60)

                CACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATA                                                                           <  SRR4302535.456913/94‑1 (MQ=60)

                CACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACAGCCACCACCAATTGGCACAATCGCGTTATCGACATCATA                                                                           >  SRR4302535.687581/1‑94 (MQ=60)

                  CGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGA                                                                         >  SRR4302535.4121387/1‑94 (MQ=60)

                  CGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGA                                                                         <  SRR4302535.3399164/94‑1 (MQ=60)

                     ATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGAT                                                                      <  SRR4302535.3501046/94‑1 (MQ=60)

                     ATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGAT                                                                      <  SRR4302535.1011308/94‑1 (MQ=60)

                       GGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCT                                                                    >  SRR4302535.1003160/1‑94 (MQ=60)

                       GGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCT                                                                    <  SRR4302535.324874/94‑1 (MQ=60)

                       GGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCT                                                                    >  SRR4302535.1439915/1‑94 (MQ=60)

                        GTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTT                                                                   <  SRR4302535.2146317/94‑1 (MQ=60)

                        GTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTT                                                                   <  SRR4302535.3491095/94‑1 (MQ=60)

                         TCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTC                                                                  >  SRR4302535.1646444/1‑94 (MQ=60)

                         TCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTC                                                                  <  SRR4302535.4290827/94‑1 (MQ=60)

                            GGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCAT                                                               >  SRR4302535.1646587/1‑94 (MQ=60)

                             GTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATA                                                              <  SRR4302535.398030/94‑1 (MQ=60)

                               TAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAAT                                                            >  SRR4302535.2035786/1‑94 (MQ=60)

                                AATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATT                                                           >  SRR4302535.1133258/1‑94 (MQ=60)

                                AATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATT                                                           <  SRR4302535.1268842/94‑1 (MQ=60)

                                AATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATT                                                           <  SRR4302535.2997791/94‑1 (MQ=60)

                                 ATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTT                                                          >  SRR4302535.3637800/1‑94 (MQ=60)

                                 ATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTT                                                          <  SRR4302535.4673485/94‑1 (MQ=60)

                                 ATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTT                                                          <  SRR4302535.2283071/94‑1 (MQ=60)

                                   gctgaaccgctcttccgatctgcgtggtATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCC                                                        <  SRR4302535.1936374/66‑1 (MQ=60)

                                   AGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCC                                                        <  SRR4302535.1836849/94‑1 (MQ=60)

                                   AGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCC                                                        >  SRR4302535.839105/1‑94 (MQ=60)

                                    GATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCA                                                       >  SRR4302535.3370546/1‑94 (MQ=60)

                                    GATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCA                                                       >  SRR4302535.4077801/1‑94 (MQ=60)

                                     ATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAG                                                      <  SRR4302535.2402687/94‑1 (MQ=60)

                                     ATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAG                                                      >  SRR4302535.1591019/1‑94 (MQ=60)

                                      TTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGA                                                     >  SRR4302535.2270438/1‑94 (MQ=60)

                                       TTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGAC                                                    <  SRR4302535.4676202/94‑1 (MQ=60)

                                       TTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGAC                                                    <  SRR4302535.3927982/94‑1 (MQ=60)

                                       TTAATTGCCACCCCAATACCAGCAATTAAACCGCCCCCACCAATTGGCACAATCGCGGTATCGACATCATAGAAATCTTTCATAATTTCCAGAC                                                    >  SRR4302535.1099275/1‑94 (MQ=60)

                                        TAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACC                                                   <  SRR4302535.1407461/94‑1 (MQ=60)

                                           TTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAAT                                                <  SRR4302535.4418717/94‑1 (MQ=60)

                                            TGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATC                                               <  SRR4302535.1598077/94‑1 (MQ=60)

                                             GCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCG                                              <  SRR4302535.1624710/94‑1 (MQ=60)

                                             GCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCG                                              >  SRR4302535.4274280/1‑94 (MQ=60)

                                              CCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATAGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGT                                             >  SRR4302535.590449/1‑94 (MQ=60)

                                               CACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTT                                            >  SRR4302535.1004954/1‑94 (MQ=60)

                                               CACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTT                                            <  SRR4302535.3099285/94‑1 (MQ=60)

                                               CACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTT                                            <  SRR4302535.909335/94‑1 (MQ=60)

                                                ACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTC                                           <  SRR4302535.1804328/94‑1 (MQ=60)

                                                 CCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCC                                          <  SRR4302535.2461922/94‑1 (MQ=60)

                                                  CGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCC                                         <  SRR4302535.1578983/94‑1 (MQ=60)

                                                   GCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCT                                        <  SRR4302535.4194217/94‑1 (MQ=60)

                                                   GCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCT                                        <  SRR4302535.1500418/94‑1 (MQ=60)

                                                   GCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCT                                        >  SRR4302535.1662431/1‑94 (MQ=60)

                                                    CAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTG                                       <  SRR4302535.259198/94‑1 (MQ=60)

                                                     AATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGG                                      >  SRR4302535.1042574/1‑94 (MQ=60)

                                                     AATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGG                                      <  SRR4302535.3133983/94‑1 (MQ=60)

                                                     AATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGG                                      <  SRR4302535.2117647/94‑1 (MQ=60)

                                                     AATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGG                                      <  SRR4302535.3952510/94‑1 (MQ=60)

                                                      ATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGC                                     >  SRR4302535.850552/1‑94 (MQ=60)

                                                       TACCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCC                                    <  SRR4302535.3373129/94‑1 (MQ=60)

                                                         CCAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAG                                  <  SRR4302535.4441226/94‑1 (MQ=60)

                                                          CAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGC                                 <  SRR4302535.1654966/94‑1 (MQ=60)

                                                          CAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGC                                 <  SRR4302535.2758533/94‑1 (MQ=60)

                                                          CAGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGC                                 >  SRR4302535.922515/1‑94 (MQ=60)

                                                           AGCAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCA                                >  SRR4302535.1645198/1‑94 (MQ=60)

                                                             CAATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAAT                              >  SRR4302535.3534432/1‑94 (MQ=60)

                                                              AATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATC                             >  SRR4302535.2295021/1‑94 (MQ=60)

                                                               ATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCCATCA                            >  SRR4302535.1925625/1‑94 (MQ=60)

                                                               ATTAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCA                            >  SRR4302535.3286086/1‑94 (MQ=60)

                                                                 TAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACT                          >  SRR4302535.4557968/1‑94 (MQ=60)

                                                                 TAAACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACT                          >  SRR4302535.2305750/1‑94 (MQ=60)

                                                                    ACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTC                       <  SRR4302535.4617155/94‑1 (MQ=60)

                                                                    ACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTC                       <  SRR4302535.2789779/94‑1 (MQ=60)

                                                                    ACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTC                       >  SRR4302535.2074794/1‑94 (MQ=60)

                                                                    ACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTC                       <  SRR4302535.1413069/94‑1 (MQ=60)

                                                                    ACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTC                       <  SRR4302535.3836985/94‑1 (MQ=60)

                                                                    ACCGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTC                       <  SRR4302535.1188462/94‑1 (MQ=60)

                                                                      CGCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGG                     >  SRR4302535.3699860/1‑94 (MQ=60)

                                                                       GCCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGA                    >  SRR4302535.1771746/1‑94 (MQ=60)

                                                                        CCACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGAT                   <  SRR4302535.4501579/94‑1 (MQ=60)

                                                                         CACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATC                  >  SRR4302535.1565263/1‑94 (MQ=60)

                                                                         CACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATC                  <  SRR4302535.3641426/94‑1 (MQ=60)

                                                                          ACCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCA                 >  SRR4302535.229228/1‑94 (MQ=60)

                                                                           CCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCAT                >  SRR4302535.574729/1‑94 (MQ=60)

                                                                           CCACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCAT                >  SRR4302535.3939960/1‑94 (MQ=60)

                                                                             ACCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCG              <  SRR4302535.2715486/94‑1 (MQ=60)

                                                                              CCAATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGT             >  SRR4302535.2991593/1‑94 (MQ=60)

                                                                                AATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAA           >  SRR4302535.755811/1‑94 (MQ=60)

                                                                                 ATTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAG          <  SRR4302535.3993242/94‑1 (MQ=60)

                                                                                  TTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGG         <  SRR4302535.1646521/94‑1 (MQ=60)

                                                                                  TTGGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGG         <  SRR4302535.935944/94‑1 (MQ=60)

                                                                                    GGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGGTG       <  SRR4302535.73928/94‑1 (MQ=60)

                                                                                    GGCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGGTG       >  SRR4302535.132134/1‑94 (MQ=60)

                                                                                     GCACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGCCCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGGTGG      <  SRR4302535.251328/94‑1 (MQ=60)

                                                                                      CACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCGCTGGCCAGCAATCACTTTCGGATCATCGTAAGGTGGG     >  SRR4302535.4188001/1‑94 (MQ=60)

                                                                                      CACAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGGTGGG     <  SRR4302535.3005206/94‑1 (MQ=60)

                                                                                      CACAATCGCGTTATCGACATCATAGAGATCTTCCATAACTACCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGGTGGG     <  SRR4302535.2295244/94‑1 (MQ=60)

                                                                                        CAATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGGTGGGAT   >  SRR4302535.4359355/1‑94 (MQ=60)

                                                                                         AATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGGTGGGATA  >  SRR4302535.2713388/1‑94 (MQ=60)

                                                                                         AATCGCGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGGTGGGATA  <  SRR4302535.964969/94‑1 (MQ=60)

GACTGTACGCCAATAACACGAATGGTCGGGTTAATAGATTTAATTGCCACCGCAATACCAGCAATTAAACCGCCACCACCAATTGGCACAATCACGTTATCGACATCATAGAGATCTTCCATAATTTCCAGACCAATCGTTCCCTGGCCAGCAATCACTTTCGGATCATCGTAAGGTGGGATA  >  NC_000913/3263041‑3263223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`