Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,283,383 |
G→A |
D89N (GAC→AAC) |
agaD → |
PTS system glucosamine enzyme IID component 1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,283,383 | 0 | G | A | 96.2%
| 531.3
/ 3.1
| 157 | D89N (GAC→AAC) | agaD | PTS system glucosamine enzyme IID component 1 |
| Reads supporting (aligned to +/- strand): ref base G (3/3); new base A (79/72); total (82/75) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.53e-01 |
Only 100 of 163 total aligned reads displayed.
GATAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTAT > NC_000913/3283293‑3283471
|
gATAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGac > 2:1256796/1‑93 (MQ=255)
gATAACCTCGAATTTATTAATACCCACCCGAATCTGGGCGGATTCCTGCTGGGGTTATTAATTTCGATGGAAGAAAAAGGAGCAAACAGCAac > 2:1068699/1‑93 (MQ=255)
aTAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAaca < 1:3182528/93‑1 (MQ=255)
tAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAacac < 1:4412160/93‑1 (MQ=255)
aaCCTCGAATTTATTAATCCCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACAcc < 2:4180802/93‑1 (MQ=255)
aaCCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACAcc > 2:2190676/1‑93 (MQ=255)
cTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGTTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCAtt < 2:1977749/93‑1 (MQ=255)
cTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCAtt > 1:1765507/1‑93 (MQ=255)
tCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGGTGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTa > 2:2585120/1‑93 (MQ=255)
tCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTa > 1:396977/1‑93 (MQ=255)
cGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTaa > 2:83616/1‑93 (MQ=255)
gAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTaaa < 1:3369700/93‑1 (MQ=255)
gAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTaaa > 2:2871530/1‑93 (MQ=255)
aaTTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAg < 1:603073/93‑1 (MQ=255)
tttATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGc > 1:1909078/1‑93 (MQ=255)
ttattaATACCCCCCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGcc < 2:72628/93‑1 (MQ=255)
ttattaATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGcc < 1:809339/93‑1 (MQ=255)
ttaATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCa > 1:1814942/1‑93 (MQ=255)
taATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCaa > 1:1299600/1‑93 (MQ=255)
aTACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAg > 1:3621088/1‑93 (MQ=255)
tACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGt < 2:775463/93‑1 (MQ=255)
tACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGt > 1:3413600/1‑93 (MQ=255)
tACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGt < 1:484833/93‑1 (MQ=255)
tACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGt > 2:3623533/1‑93 (MQ=255)
acccacccGAATCTGGTCGGATTCCTGATGGGTTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTg < 1:4444187/93‑1 (MQ=255)
cccacccGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTgg < 1:4161088/93‑1 (MQ=255)
cacccGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCa < 2:3309444/93‑1 (MQ=255)
ccccGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCAc < 1:599510/92‑1 (MQ=255)
ccccGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCAc < 2:3954817/92‑1 (MQ=255)
cGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGAGGCACTGt > 2:3535724/1‑93 (MQ=255)
aTCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTg > 1:1939561/1‑93 (MQ=255)
aTCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTg < 1:3755075/93‑1 (MQ=255)
tCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTgg > 1:4257206/1‑93 (MQ=255)
tGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGcc > 1:3287823/1‑93 (MQ=255)
gTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCa > 1:2826806/1‑93 (MQ=255)
tCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCaa < 2:2797575/93‑1 (MQ=255)
cGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAAt < 2:2185508/93‑1 (MQ=255)
ggATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATc < 2:4248806/93‑1 (MQ=255)
gATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCg > 2:3459305/1‑93 (MQ=255)
aTTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGc > 2:3564920/1‑93 (MQ=255)
ttCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGcc < 1:100581/93‑1 (MQ=255)
tCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCg < 1:3309252/93‑1 (MQ=255)
ccTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCgg < 1:429362/93‑1 (MQ=255)
aTGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGAtt > 1:4124531/1‑93 (MQ=255)
aTGGGGCTATTAATTTCGCTGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGAtt > 2:4499876/1‑93 (MQ=255)
tGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTg > 2:466690/1‑93 (MQ=255)
tGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTg > 1:2448878/1‑93 (MQ=255)
tGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTg < 2:195784/93‑1 (MQ=255)
tGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTg > 1:1697598/1‑93 (MQ=255)
ggggTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTgg > 2:132971/1‑93 (MQ=255)
ggggTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTgg < 2:2370408/93‑1 (MQ=255)
gggTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGgc < 2:1560160/93‑1 (MQ=255)
ggTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTG‑TTGGCCCAATCGCCGGGATTGgcga < 2:148176/93‑1 (MQ=255)
ttattaATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGgcgat < 1:30051/93‑1 (MQ=255)
ttattaATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGgcgat > 2:2855198/1‑93 (MQ=255)
tattaATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGgcgatg > 2:2826274/1‑93 (MQ=255)
tattaATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGgcgatg > 2:681525/1‑93 (MQ=255)
attaATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGgcgatgc > 1:1543819/1‑93 (MQ=255)
ttaATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGgcgatgcg > 1:910319/1‑93 (MQ=255)
taATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGgcgatgcga > 1:1388096/1‑93 (MQ=255)
taATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGgcgatgcga > 1:2117554/1‑93 (MQ=255)
aaTTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAAGCCTCAAAGTGGCACTGTTTGGCCCAATCGCTGAGAGTGgcgctgtcat > 2:2751118/1‑89 (MQ=255)
aTTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGAtt < 2:579661/93‑1 (MQ=255)
aTTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGAtt > 1:558595/1‑93 (MQ=255)
tttCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGAttt < 1:2187319/93‑1 (MQ=255)
tttCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGAttt > 2:3597943/1‑93 (MQ=255)
ttCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGAtttt > 1:1153547/1‑93 (MQ=255)
tCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTc < 2:4280677/93‑1 (MQ=255)
tCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTc > 1:3471435/1‑93 (MQ=255)
aTGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTgg > 2:566385/1‑93 (MQ=255)
gaagaaAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGttt > 1:2613973/1‑93 (MQ=255)
agaaAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTAc < 1:4169106/93‑1 (MQ=255)
agaaAAAGGAGAAAACCGCAACACCATTAAAGGCATCAAAGTGGCACTGTTTGGCCCAATAGCCGGGATTGGCGATGCGATTTTCTGGTTTAc > 1:1878879/1‑93 (MQ=255)
gaaAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACt < 2:2938560/93‑1 (MQ=255)
aaaaaGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACtt < 1:2166564/93‑1 (MQ=255)
aaaaGGAGAAAACCGCAACACCATTAAAGGCCTCAGAGTGGCGCTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACttt > 2:2947369/1‑93 (MQ=255)
aaaaGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACttt < 2:1749278/93‑1 (MQ=255)
aaaaGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACttt < 1:2185599/93‑1 (MQ=255)
aaaaGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACttt > 1:320168/1‑93 (MQ=255)
aaaGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTttg > 1:922558/1‑93 (MQ=255)
aaaGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTttg > 1:4580793/1‑93 (MQ=255)
aaGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTttgt > 1:2654900/1‑93 (MQ=255)
aaGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTttgt < 1:3341442/93‑1 (MQ=255)
aaGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTttgt > 1:3905641/1‑93 (MQ=255)
aaGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTttgt > 1:1361557/1‑93 (MQ=255)
aGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTttgtt > 2:348254/1‑93 (MQ=255)
aGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTttgtt > 2:3941726/1‑93 (MQ=255)
aGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTttgtt < 2:3951205/93‑1 (MQ=255)
aGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTttgtt < 1:3905462/93‑1 (MQ=255)
ggAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTttgttg < 1:4676203/93‑1 (MQ=255)
gagaAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGc < 2:2413926/93‑1 (MQ=255)
agaAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGcc > 1:2166132/1‑93 (MQ=255)
aaCCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGAtt > 2:3695499/1‑93 (MQ=255)
aCCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTa < 1:2857015/93‑1 (MQ=255)
aCCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTa < 1:1017809/93‑1 (MQ=255)
aCCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTa < 1:2316266/93‑1 (MQ=255)
ccGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTAt < 1:2035410/93‑1 (MQ=255)
ccGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTAt < 1:1464558/93‑1 (MQ=255)
ccGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTAt > 2:4455539/1‑93 (MQ=255)
ccGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTAt < 2:2613642/93‑1 (MQ=255)
|
GATAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTAT > NC_000913/3283293‑3283471
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGATAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGG > NC_000913/3283292‑3283476
|
AGATAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAAC > SRR4302535.2826015/1‑94 (MQ=60)
ATAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACAC < SRR4302535.3204520/94‑1 (MQ=60)
TAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACC < SRR4302535.4442357/94‑1 (MQ=60)
AACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCA > SRR4302535.2652418/1‑94 (MQ=60)
CCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATT < SRR4302535.2100043/94‑1 (MQ=60)
CCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATT > SRR4302535.1778307/1‑94 (MQ=60)
CTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCGTTA > SRR4302535.3268469/1‑94 (MQ=60)
CTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTA > SRR4302535.399758/1‑94 (MQ=60)
CTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTA > SRR4302535.2959173/1‑94 (MQ=60)
CGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAA < SRR4302535.905430/94‑1 (MQ=60)
GAATTTATTAATACCCTCCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAG < SRR4302535.1055590/94‑1 (MQ=60)
GAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAG < SRR4302535.3393144/94‑1 (MQ=60)
AATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGG < SRR4302535.607293/94‑1 (MQ=60)
ATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGC > SRR4302535.1922840/1‑94 (MQ=60)
TTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCT < SRR4302535.815001/94‑1 (MQ=60)
ATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGTAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCA < SRR4302535.4408864/94‑1 (MQ=60)
ATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCA > SRR4302535.1828066/1‑94 (MQ=60)
TTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAA > SRR4302535.1308865/1‑94 (MQ=60)
AATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAG < SRR4302535.2403767/94‑1 (MQ=60)
AATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAG > SRR4302535.3646189/1‑94 (MQ=60)
ATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGT > SRR4302535.3437351/1‑94 (MQ=60)
TACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTG < SRR4302535.1697929/94‑1 (MQ=60)
TACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTG < SRR4302535.488232/94‑1 (MQ=60)
ACCCACCCGAATCTGGTCGGATTCCTGATGGGTTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGG < SRR4302535.4474664/94‑1 (MQ=60)
CCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGC < SRR4302535.4189570/94‑1 (MQ=60)
CCCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACT < SRR4302535.603704/94‑1 (MQ=60)
CCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGT > SRR4302535.4572612/1‑94 (MQ=60)
AATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTG > SRR4302535.1953530/1‑94 (MQ=60)
ATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGG > SRR4302535.4286373/1‑94 (MQ=60)
ATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGG < SRR4302535.3781050/94‑1 (MQ=60)
CTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCC > SRR4302535.3310680/1‑94 (MQ=60)
GGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCA > SRR4302535.2846867/1‑94 (MQ=60)
TTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCG < SRR4302535.101291/94‑1 (MQ=60)
TCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGG < SRR4302535.3332278/94‑1 (MQ=60)
TCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGG < SRR4302535.1819662/94‑1 (MQ=60)
CCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGG > SRR4302535.2296364/1‑94 (MQ=60)
CCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGG < SRR4302535.432347/94‑1 (MQ=60)
CTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGA > SRR4302535.3526152/1‑94 (MQ=60)
GATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATT > SRR4302535.4152758/1‑94 (MQ=60)
GATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATT < SRR4302535.3917746/94‑1 (MQ=60)
ATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTG > SRR4302535.1709868/1‑94 (MQ=60)
ATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTG < SRR4302535.1383040/94‑1 (MQ=60)
ATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTG > SRR4302535.2466526/1‑94 (MQ=60)
GGTTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCG < SRR4302535.7370/94‑1 (MQ=60)
GTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGAT < SRR4302535.4223541/94‑1 (MQ=60)
TTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATG < SRR4302535.30283/94‑1 (MQ=60)
TTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATG > SRR4302535.1370823/1‑94 (MQ=60)
TATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGC > SRR4302535.1554944/1‑94 (MQ=60)
ATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCG > SRR4302535.916789/1‑94 (MQ=60)
TTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGA > SRR4302535.2132829/1‑94 (MQ=60)
TTAATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGA > SRR4302535.1398003/1‑94 (MQ=60)
AATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATT < SRR4302535.1920867/94‑1 (MQ=60)
AATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATT > SRR4302535.562500/1‑94 (MQ=60)
ATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTT > SRR4302535.1941481/1‑94 (MQ=60)
ATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTT > SRR4302535.1521597/1‑94 (MQ=60)
ATTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTT > SRR4302535.1002879/1‑94 (MQ=60)
TTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTT > SRR4302535.1161794/1‑94 (MQ=60)
TTTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTT < SRR4302535.2202900/94‑1 (MQ=60)
TTCGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTC > SRR4302535.3495557/1‑94 (MQ=60)
CGATGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTG > SRR4302535.500737/1‑94 (MQ=60)
TGGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTT > SRR4302535.3336115/1‑94 (MQ=60)
GGAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTT > SRR4302535.2632720/1‑94 (MQ=60)
GAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTA > SRR4302535.3367377/1‑94 (MQ=60)
GAAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTA > SRR4302535.4619216/1‑94 (MQ=60)
AAGAAAAAGGAGAAAACCGCAACACCATTAAAGGCATCAAAGTGGCACTGTTTGGCCCAATAGCCGGGATTGGCGATGCGATTTTCTGGTTTAC > SRR4302535.1892417/1‑94 (MQ=60)
AGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACT > SRR4302535.3447410/1‑94 (MQ=60)
AGAAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACT < SRR4302535.4197655/94‑1 (MQ=60)
AAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTT > SRR4302535.322384/1‑94 (MQ=60)
AAAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTT < SRR4302535.2182094/94‑1 (MQ=60)
AAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTG < SRR4302535.2201176/94‑1 (MQ=60)
AAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTG > SRR4302535.929096/1‑94 (MQ=60)
AAAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTG > SRR4302535.4611990/1‑94 (MQ=60)
AAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGT > SRR4302535.574320/1‑94 (MQ=60)
AAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGT < SRR4302535.2195115/94‑1 (MQ=60)
AAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGT > SRR4302535.2673923/1‑94 (MQ=60)
AAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGT > SRR4302535.1371296/1‑94 (MQ=60)
AAAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGT > SRR4302535.3932401/1‑94 (MQ=60)
AAGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTT < SRR4302535.3364722/94‑1 (MQ=60)
AGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTG < SRR4302535.3932209/94‑1 (MQ=60)
AGGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTG > SRR4302535.4076658/1‑94 (MQ=60)
GGAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGC < SRR4302535.4707766/94‑1 (MQ=60)
GAGAAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCC > SRR4302535.2181660/1‑94 (MQ=60)
AAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGAT > SRR4302535.4192297/1‑94 (MQ=60)
AAAACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGAT < SRR4302535.2179670/94‑1 (MQ=60)
ACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTAT < SRR4302535.2877256/94‑1 (MQ=60)
ACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTAT < SRR4302535.2332840/94‑1 (MQ=60)
ACCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTAT < SRR4302535.1025044/94‑1 (MQ=60)
CCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATG < SRR4302535.3992848/94‑1 (MQ=60)
CCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATG < SRR4302535.1475051/94‑1 (MQ=60)
CCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATG < SRR4302535.2050073/94‑1 (MQ=60)
CCGCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATG < SRR4302535.310706/94‑1 (MQ=60)
GCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC < SRR4302535.1820886/94‑1 (MQ=60)
GCAACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGC < SRR4302535.757149/94‑1 (MQ=60)
CAACACCATTAAAGGCCTCAAAGTGACACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGTCG < SRR4302535.4561809/94‑1 (MQ=60)
GACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGG > SRR4302535.3775776/1‑94 (MQ=60)
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AGATAACCTCGAATTTATTAATACCCACCCGAATCTGGTCGGATTCCTGATGGGGTTATTAATTTCGATGGAAGAAAAAGGAGAAAACCGCGACACCATTAAAGGCCTCAAAGTGGCACTGTTTGGCCCAATCGCCGGGATTGGCGATGCGATTTTCTGGTTTACTTTGTTGCCGATTATGGCGG > NC_000913/3283292‑3283476
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
