Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,295,175 |
T→C |
Q202R (CAG→CGG) |
yraQ ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,295,175 | 0 | T | C | 100.0%
| 456.8
/ NA
| 145 | Q202R (CAG→CGG) | yraQ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (70/75); total (70/75) |
Only 100 of 155 total aligned reads displayed.
ATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCTGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAATCGCCGC > NC_000913/3295085‑3295263
|
aTCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGc > 1:1297180/1‑93 (MQ=255)
tCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCcgcg < 1:4023438/93‑1 (MQ=255)
gTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGtt > 2:3737758/1‑93 (MQ=255)
tACTCCAGAAAAGCGTCCATAGCGGCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTGGACCGGTGCGCGCGttt > 1:2313873/1‑93 (MQ=255)
aCTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTg > 2:1138046/1‑93 (MQ=255)
aCTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTg < 1:4476570/93‑1 (MQ=255)
cTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGc > 1:1873805/1‑93 (MQ=255)
cTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCCGTGCCCGCGTTTGc > 1:2478628/1‑93 (MQ=255)
tCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCg < 2:4424652/93‑1 (MQ=255)
tCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCg < 2:4154546/93‑1 (MQ=255)
tCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCg < 1:2013592/93‑1 (MQ=255)
ccAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCgg < 1:1665476/93‑1 (MQ=255)
cAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGgt < 1:880388/93‑1 (MQ=255)
aGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGgtg > 2:1734521/1‑93 (MQ=255)
gAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCGAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGgcgt > 2:2242276/1‑93 (MQ=255)
aGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCa < 2:1614382/93‑1 (MQ=255)
gCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCAc > 1:87167/1‑93 (MQ=255)
gCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCAc < 2:74853/93‑1 (MQ=255)
gCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCAc < 2:3155873/93‑1 (MQ=255)
tCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCa > 2:1718837/1‑93 (MQ=255)
tCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCa > 2:3552743/1‑93 (MQ=255)
cATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCAcc < 2:3164323/93‑1 (MQ=255)
cATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCAcc > 2:1572864/1‑93 (MQ=255)
aTAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCTGTGCCCGCGTTTGCGGTGTTTCACGCAccc > 2:3948549/1‑93 (MQ=255)
aTAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCAccc > 2:3003328/1‑93 (MQ=255)
gcgcCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCAtt > 1:2597453/1‑93 (MQ=255)
gcgcCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCAtt < 2:3782766/93‑1 (MQ=255)
cgcCCTGCCCCAGCGGCTAAAAACCCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCAttt < 2:4314587/93‑1 (MQ=255)
gcCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCAtttt > 1:4329415/1‑93 (MQ=255)
cccTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCAttttt > 1:697684/1‑93 (MQ=255)
cccTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCAttttt < 1:4534362/93‑1 (MQ=255)
ccagCCCCAGCGGCTAAAAAACCCGCCTTGTGCTTCCGGTATGTCATTTTCGACCGGTGCCGGCGTGTGCGATGTTTCACGCACCCATTTTTg < 2:1657896/90‑1 (MQ=255)
ccTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTg > 2:2543451/1‑93 (MQ=255)
cTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGc < 1:4333957/93‑1 (MQ=255)
cTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGc > 2:2977437/1‑93 (MQ=255)
tGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCa > 1:484575/1‑93 (MQ=255)
cccAGCGGCTAAAAACCCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCa < 2:2260506/93‑1 (MQ=255)
cccAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCa < 2:1296433/93‑1 (MQ=255)
ccAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAg > 2:2357048/1‑93 (MQ=255)
cAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGc < 1:3376649/93‑1 (MQ=255)
cAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGc < 1:1506162/93‑1 (MQ=255)
cAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGc < 1:1117516/93‑1 (MQ=255)
gCGGCTAAAAAACCCGCGCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGt < 1:2072305/93‑1 (MQ=255)
gCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGt < 1:938775/93‑1 (MQ=255)
gCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGt < 2:3839477/93‑1 (MQ=255)
gCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGt < 1:1502630/93‑1 (MQ=255)
cGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTc < 2:4111121/93‑1 (MQ=255)
gCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGc > 2:1919989/1‑93 (MQ=255)
gCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCAATTTTTGCACCAGCGTCGc < 2:3242000/93‑1 (MQ=255)
tAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCaa < 2:3336184/93‑1 (MQ=255)
aaaaaaCCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAAt < 2:2855590/93‑1 (MQ=255)
aaaagCCCGCGCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCGCCAGCGTCGCAATc < 2:4268141/93‑1 (MQ=255)
aaaaCCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCa > 2:181940/1‑93 (MQ=255)
aaaCCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAg < 2:846641/93‑1 (MQ=255)
aCCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCa > 2:4578676/1‑93 (MQ=255)
cccGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCac < 2:2376419/93‑2 (MQ=255)
ccGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAac > 1:951535/1‑93 (MQ=255)
ccGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAac < 1:1872104/93‑1 (MQ=255)
ccGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAac > 1:4079088/1‑93 (MQ=255)
cGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAaca < 2:3675514/93‑1 (MQ=255)
gCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAacac < 1:1743119/93‑1 (MQ=255)
gCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAacac > 1:4491824/1‑93 (MQ=255)
ccTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCATGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCa < 1:3387748/93‑1 (MQ=255)
ccTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCa > 2:1526956/1‑93 (MQ=255)
ccTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCa > 1:3662750/1‑93 (MQ=255)
cTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCAt > 1:4210576/1‑93 (MQ=255)
gtgCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCa > 1:306166/1‑93 (MQ=255)
gtgCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCa > 2:1538633/1‑93 (MQ=255)
gtgCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCa < 1:3901312/93‑1 (MQ=255)
gtgCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCa > 2:2489820/1‑93 (MQ=255)
cTTCCGGTATGTCAATTTCGACCGTGGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCa < 2:3477096/93‑1 (MQ=255)
cTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCa < 1:124244/93‑1 (MQ=255)
ttCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAg > 2:1359547/1‑93 (MQ=255)
ccGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGcc < 2:2195673/93‑1 (MQ=255)
ccGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGcc > 1:3778027/1‑93 (MQ=255)
cGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGccc < 1:1922944/93‑1 (MQ=255)
cGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGccc > 2:3384423/1‑93 (MQ=255)
ggTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCg > 1:1947356/1‑93 (MQ=255)
ggTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCg > 1:1902068/1‑93 (MQ=255)
tATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGc < 1:3691616/93‑1 (MQ=255)
tATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGc > 2:2041388/1‑93 (MQ=255)
aTGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGcc > 1:2798008/1‑93 (MQ=255)
tGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGcca < 2:767362/93‑1 (MQ=255)
tCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGccacc > 1:1225904/1‑93 (MQ=255)
aaTTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAg < 1:4573285/93‑1 (MQ=255)
aaTTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAg > 2:4448920/1‑93 (MQ=255)
aaTTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAg < 2:3605971/93‑1 (MQ=255)
aTTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGa < 1:250918/93‑1 (MQ=255)
aTTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGa < 1:1077359/93‑1 (MQ=255)
aTTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCAACCAGa < 1:1297167/93‑1 (MQ=255)
tttCGACCGGTGCCCGCGTTTGCGATGTTCCACGCACCCATTTTCACACCAGCGTCGCAATCAGCAACACCATCCCCAGCCCGGCCACCAGAc < 2:4588192/93‑1 (MQ=255)
cGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGaa < 2:1833383/93‑1 (MQ=255)
gACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAAt > 2:2106126/1‑93 (MQ=255)
gACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAAt < 2:1108668/93‑1 (MQ=255)
gACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAAt > 1:260594/1‑93 (MQ=255)
gccGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAATc < 2:4262158/92‑1 (MQ=255)
aCCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAATc < 2:3877154/93‑1 (MQ=255)
ccGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAATcg > 2:4015026/1‑93 (MQ=255)
gTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGATGAATcgccg < 2:1303602/93‑1 (MQ=255)
gTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAATcgccg < 1:555519/93‑1 (MQ=255)
|
ATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCTGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAATCGCCGC > NC_000913/3295085‑3295263
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCTGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAATCGCCGCAAAAC > NC_000913/3295083‑3295268
|
GGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCG > SRR4302535.3767719/1‑94 (MQ=60)
GATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGC > SRR4302535.1306433/1‑94 (MQ=60)
TCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGT < SRR4302535.4050964/94‑1 (MQ=60)
GTACTCCAGAAAAGCGTCCATAGCGGCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTGGACCGGTGCGCGCGTTT > SRR4302535.2330428/1‑94 (MQ=60)
ACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGC > SRR4302535.1887307/1‑94 (MQ=60)
ACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGC > SRR4302535.2025728/1‑94 (MQ=60)
ACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGC < SRR4302535.4507303/94‑1 (MQ=60)
ACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGC < SRR4302535.829759/94‑1 (MQ=60)
ACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCCGTGCCCGCGTTTGC > SRR4302535.2496508/1‑94 (MQ=60)
CTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAAGCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCG > SRR4302535.1254222/1‑94 (MQ=60)
TCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGG < SRR4302535.2028098/94‑1 (MQ=60)
TCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGG < SRR4302535.3770210/94‑1 (MQ=60)
CCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGT < SRR4302535.1677527/94‑1 (MQ=60)
CAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTG < SRR4302535.886621/94‑1 (MQ=60)
AGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGT > SRR4302535.4018557/1‑94 (MQ=60)
AAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTT < SRR4302535.320949/94‑1 (MQ=60)
AAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTT < SRR4302535.2681646/94‑1 (MQ=60)
AAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCA > SRR4302535.2541287/1‑94 (MQ=60)
AGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCAC < SRR4302535.916614/94‑1 (MQ=60)
AGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCAC > SRR4302535.87782/1‑94 (MQ=60)
AGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATT > SRR4302535.2616108/1‑94 (MQ=60)
GCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTT < SRR4302535.1886839/94‑1 (MQ=60)
CGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTT > SRR4302535.4359018/1‑94 (MQ=60)
GCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTT > SRR4302535.3567617/1‑94 (MQ=60)
GCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTT > SRR4302535.702581/1‑94 (MQ=60)
CCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTG < SRR4302535.4334891/94‑1 (MQ=60)
CCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTG < SRR4302535.4565391/94‑1 (MQ=60)
CTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCA < SRR4302535.4363597/94‑1 (MQ=60)
CTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCA > SRR4302535.487972/1‑94 (MQ=60)
GCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACC < SRR4302535.4527920/94‑1 (MQ=60)
CCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAACTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCA > SRR4302535.2526520/1‑94 (MQ=60)
CCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAG > SRR4302535.4374362/1‑94 (MQ=60)
CAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCG < SRR4302535.3400129/94‑1 (MQ=60)
CAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCG < SRR4302535.1125486/94‑1 (MQ=60)
CAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCG < SRR4302535.1516991/94‑1 (MQ=60)
GCGGCTAAAAAACCCGCGCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTC < SRR4302535.2087237/94‑1 (MQ=60)
GCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTC < SRR4302535.1513440/94‑1 (MQ=60)
GCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTC < SRR4302535.945425/94‑1 (MQ=60)
AAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGC > SRR4302535.1339223/1‑94 (MQ=60)
CCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAAC > SRR4302535.958281/1‑94 (MQ=60)
CCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAAC > SRR4302535.4106994/1‑94 (MQ=60)
CCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACA < SRR4302535.1885593/94‑1 (MQ=60)
CGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACAC > SRR4302535.4522659/1‑94 (MQ=60)
GCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACC < SRR4302535.1755727/94‑1 (MQ=60)
CCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCA > SRR4302535.3688111/1‑94 (MQ=60)
CCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACAA > SRR4302535.1185350/1‑94 (MQ=60)
CCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCATGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCAT < SRR4302535.3411318/94‑1 (MQ=60)
CCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCAT > SRR4302535.4239395/1‑94 (MQ=60)
CTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATC > SRR4302535.1915971/1‑94 (MQ=60)
TGTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCA > SRR4302535.308284/1‑94 (MQ=60)
GTGCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCAC < SRR4302535.3928035/94‑1 (MQ=60)
GCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCA > SRR4302535.1774776/1‑94 (MQ=60)
GCTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCA < SRR4302535.1630605/94‑1 (MQ=60)
CTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAG < SRR4302535.4072217/94‑1 (MQ=60)
CTTCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAG < SRR4302535.125116/94‑1 (MQ=60)
TCCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCC > SRR4302535.3804068/1‑94 (MQ=60)
CCGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCC < SRR4302535.558117/94‑1 (MQ=60)
CGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCG > SRR4302535.1915758/1‑94 (MQ=60)
CGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCG < SRR4302535.1936804/94‑1 (MQ=60)
CGGTATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCG > SRR4302535.1961377/1‑94 (MQ=60)
TATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCC < SRR4302535.3717170/94‑1 (MQ=60)
TATGTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCC > SRR4302535.2817919/1‑94 (MQ=60)
GTCAATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACC > SRR4302535.1234672/1‑94 (MQ=60)
AATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGA < SRR4302535.4604459/94‑1 (MQ=60)
ATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGAC < SRR4302535.1085023/94‑1 (MQ=60)
ATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGAC < SRR4302535.252645/94‑1 (MQ=60)
ATTTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCAACCAGAC < SRR4302535.1306420/94‑1 (MQ=60)
TTCGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGA > SRR4302535.2238842/1‑94 (MQ=60)
CGACCGGTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAAT > SRR4302535.262401/1‑94 (MQ=60)
GTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAATCGCCGC > SRR4302535.4649633/1‑94 (MQ=60)
GTGCCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAATCGCCGC < SRR4302535.559413/94‑1 (MQ=60)
CCCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAATCGCCGCAAA > SRR4302535.1862320/1‑94 (MQ=60)
CCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAATCGCCGCAAAA > SRR4302535.4667640/1‑94 (MQ=60)
CCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAATCGCCGCAAAA > SRR4302535.3593646/1‑94 (MQ=60)
CCGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAATCGCCGCAAAA > SRR4302535.2760857/1‑94 (MQ=60)
CGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAATCGCCGCAAAAC > SRR4302535.780966/1‑94 (MQ=60)
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GGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAACCCGCCCTGTGCTTCCGGTATGTCAATTTCGACCGGTGCCTGCGTTTGCGGTGTTTCACGCACCCATTTTTGCACCAGCGTCGCAATCAGCAACACCATCACCAGCCCGGCCACCAGACGAATCGCCGCAAAAC > NC_000913/3295083‑3295268
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
