Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,337,699	T→C	Q3R (CAG→CGG)	yrbF ←	putative ATP‑binding component of a transport system

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,337,699	0	T	C	100.0%	590.3 / NA	189	Q3R (CAG→CGG)	yrbF	putative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (86/103); total (86/103)

Only 100 of 193 total aligned reads displayed.

GCGGCACGGTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACTGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATTACC  >  NC_000913/3337610‑3337788

gcgGCACGGTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCt                                                                                        >  1:1312649/1‑93 (MQ=255)

    cACGGTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCAt                                                                                    >  2:1419920/1‑93 (MQ=255)

    cACGGTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCAt                                                                                    <  2:2320630/93‑1 (MQ=255)

      cGGTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATaa                                                                                  <  1:4025786/93‑1 (MQ=255)

        gTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAAtt                                                                                >  1:4207389/1‑93 (MQ=255)

           aGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCAc                                                                             >  1:3625884/1‑93 (MQ=255)

           aGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCAc                                                                             >  2:724801/1‑93 (MQ=255)

                aaTATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTc                                                                        <  2:865930/93‑1 (MQ=255)

                 atatTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCg                                                                       >  1:2650550/1‑93 (MQ=255)

                  tattatCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGt                                                                      >  2:3227330/1‑93 (MQ=255)

                   attatCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTc                                                                     <  1:2206405/93‑1 (MQ=255)

                    ttatCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCt                                                                    >  1:211130/1‑93 (MQ=255)

                    ttatCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCt                                                                    >  1:3011433/1‑93 (MQ=255)

                      atCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTg                                                                  <  1:1062388/93‑1 (MQ=255)

                      atCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTg                                                                  <  2:2814648/93‑1 (MQ=255)

                       tCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCCACTAACTTCGCGACAGACCGCTCGATAATTCACCCTTCGTCTTGc                                                                 >  2:4132482/1‑93 (MQ=255)

                       tCGAAGATGCAGCGATTGCCACGCGTAAAACGGACATCGCGCATATCAACTAAATTCGCCACAGACCGCGCCATAATTCACCCTTCGTCTTGc                                                                 <  2:1516918/93‑1 (MQ=255)

                         gAAGATGCAGCGATTGCCATGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGt                                                               >  2:4581559/1‑93 (MQ=255)

                           aGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTg                                                             <  2:487426/93‑1 (MQ=255)

                           aGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTg                                                             >  1:868279/1‑93 (MQ=255)

                            gATGCAGCGATTGCCACGCGTAAAGCTGACATCGCGCATATCGTCTAAATTCGCCACAGCCCGCTCCATAATTCTCCCTTCGTCTTGCGTTGa                                                            <  2:1358550/93‑1 (MQ=255)

                             aTGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGAt                                                           <  2:830902/93‑1 (MQ=255)

                              tGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGAtt                                                          <  1:2795573/93‑1 (MQ=255)

                               gCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGAttt                                                         >  1:1601265/1‑93 (MQ=255)

                                cAGCGATTGCCACGCGTAAAACTGACGTCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGAtttt                                                        <  1:2210834/93‑1 (MQ=255)

                                cAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGAtttt                                                        >  1:489922/1‑93 (MQ=255)

                                 aGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTc                                                       <  1:3288894/93‑1 (MQ=255)

                                 aGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTc                                                       <  2:1686766/93‑1 (MQ=255)

                                   cGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTa                                                     >  1:1801032/1‑93 (MQ=255)

                                    gATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTag                                                    <  1:4424440/93‑2 (MQ=255)

                                    gATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTaa                                                    >  2:608837/1‑93 (MQ=255)

                                    gATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTaa                                                    <  2:3022465/93‑1 (MQ=255)

                                    gATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTaa                                                    >  2:2520136/1‑93 (MQ=255)

                                    gATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACACACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTaa                                                    <  1:2522210/93‑1 (MQ=255)

                                     aTTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAg                                                   <  2:3134635/93‑1 (MQ=255)

                                     aTTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAg                                                   >  1:1177037/1‑93 (MQ=255)

                                     aTTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAg                                                   >  2:1866552/1‑93 (MQ=255)

                                      ttGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGCACGATCCATAATTCACCCTTCGTCTTGCGTTTATTTTCTTAGc                                                  >  1:3450711/1‑93 (MQ=255)

                                      ttGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGc                                                  <  2:3685539/93‑1 (MQ=255)

                                        tccACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCAt                                                <  1:4131640/92‑1 (MQ=255)

                                        gCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCAt                                                <  2:3974202/93‑1 (MQ=255)

                                        gCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCAt                                                <  1:763924/93‑1 (MQ=255)

                                        gCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCAt                                                <  2:2672084/93‑1 (MQ=255)

                                         ccACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATg                                               >  2:4346991/1‑93 (MQ=255)

                                         ccACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATg                                               <  2:3384841/93‑1 (MQ=255)

                                          cACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATgg                                              <  1:3357026/93‑1 (MQ=255)

                                          cACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATgg                                              >  1:3082114/1‑93 (MQ=255)

                                          cACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATgg                                              >  2:1512656/1‑93 (MQ=255)

                                           aCGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGgc                                             >  1:2180165/1‑93 (MQ=255)

                                           aCGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGgc                                             <  1:1241719/93‑1 (MQ=255)

                                           aCGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGgc                                             <  1:4064147/93‑1 (MQ=255)

                                             gcgTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGgcgc                                           <  2:4145468/93‑1 (MQ=255)

                                             gcgTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGgcgc                                           <  1:96988/93‑1 (MQ=255)

                                               gTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCta                                         >  1:2693638/1‑92 (MQ=255)

                                               gTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTc                                         >  1:1481799/1‑93 (MQ=255)

                                               gTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTc                                         >  1:1581327/1‑93 (MQ=255)

                                               gTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTc                                         >  1:1634388/1‑93 (MQ=255)

                                               gTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTc                                         >  2:2443996/1‑93 (MQ=255)

                                                tAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCa                                        >  2:1195999/1‑93 (MQ=255)

                                                  aaaCTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAAt                                      <  2:1269819/93‑1 (MQ=255)

                                                  aaaCTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAAt                                      >  1:3347304/1‑93 (MQ=255)

                                                    aCTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAAttt                                    >  2:4050515/1‑93 (MQ=255)

                                                     cTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTa                                   <  2:4682310/93‑1 (MQ=255)

                                                     cTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTa                                   >  2:3542884/1‑93 (MQ=255)

                                                      tGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTaa                                  >  2:4612659/1‑93 (MQ=255)

                                                      tGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTaa                                  <  2:214064/93‑1 (MQ=255)

                                                       gACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAAc                                 <  1:2831548/93‑1 (MQ=255)

                                                        aCATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAAcc                                <  2:2046619/93‑1 (MQ=255)

                                                        aCATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAAcc                                <  2:4001013/93‑1 (MQ=255)

                                                        aCATCGCGCATATCAACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAAcc                                <  2:742269/93‑1 (MQ=255)

                                                              cgcATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAAc                          <  2:3714120/93‑1 (MQ=255)

                                                               gcATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCACTTTAACCTTGAAcc                         >  2:172046/1‑93 (MQ=255)

                                                               gcATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAAcc                         >  1:3843331/1‑93 (MQ=255)

                                                                cATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAAccc                        >  2:3341390/1‑93 (MQ=255)

                                                                 ttatCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCa                       >  1:3495526/2‑93 (MQ=255)

                                                                 atatCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCa                       >  2:795343/1‑93 (MQ=255)

                                                                  tatCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCaa                      <  1:4171206/93‑1 (MQ=255)

                                                                   atCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAAc                     >  1:2548266/1‑93 (MQ=255)

                                                                    tCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACa                    <  2:3467324/93‑1 (MQ=255)

                                                                      gACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACata                  <  1:1070495/93‑1 (MQ=255)

                                                                      gACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACata                  >  2:260400/1‑93 (MQ=255)

                                                                       aCTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACatat                 >  2:2719386/1‑93 (MQ=255)

                                                                       aCTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACatat                 <  1:44802/93‑1 (MQ=255)

                                                                        cTNANTNCGCCACAGACCGCTCNATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACNTTGAACCCAACATAtt                <  1:3048930/93‑1 (MQ=255)

                                                                         tAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATAttt               <  2:1150799/93‑1 (MQ=255)

                                                                            aTTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACa            <  1:2058055/93‑1 (MQ=255)

                                                                            aTTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACa            <  1:355610/93‑1 (MQ=255)

                                                                            aTTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACa            <  2:2000775/93‑1 (MQ=255)

                                                                            aTTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACa            >  2:3871114/1‑93 (MQ=255)

                                                                             ttCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAg           <  1:2410707/93‑1 (MQ=255)

                                                                                gCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAat        >  2:1039192/1‑93 (MQ=255)

                                                                                gCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAat        <  1:1157649/93‑1 (MQ=255)

                                                                                 ccACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAata       <  1:798666/93‑1 (MQ=255)

                                                                                  cacaGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAatat      >  1:331671/1‑93 (MQ=255)

                                                                                   acaGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATAtt     <  1:371168/93‑1 (MQ=255)

                                                                                   acaGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATAtt     >  1:4387852/1‑93 (MQ=255)

                                                                                      gACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATTAcc  <  2:4372242/93‑1 (MQ=255)

                                                                                      gACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATTAcc  >  1:4656332/1‑93 (MQ=255)

                                                                                      gACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATTAcc  <  2:2395439/93‑1 (MQ=255)

                                                                                      gACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATTAcc  <  1:3648686/93‑1 (MQ=255)

GCGGCACGGTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACTGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATTACC  >  NC_000913/3337610‑3337788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCTCGCGGCACGGTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACTGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATTACCCGCC  >  NC_000913/3337606‑3337792

CCTCGCGGCACGGTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACG                                                                                               >  SRR4302535.4176429/1‑94 (MQ=60)

CCTCGCGGCACGGTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACC                                                                                               <  SRR4302535.4441540/94‑1 (MQ=60)

   CGCGGCACGGTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCT                                                                                            >  SRR4302535.1322032/1‑94 (MQ=60)

       GCACGGTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCAT                                                                                        <  SRR4302535.1116680/94‑1 (MQ=60)

          CGGTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAAT                                                                                     >  SRR4302535.1711068/1‑94 (MQ=60)

          CGGTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAAT                                                                                     <  SRR4302535.4053331/94‑1 (MQ=60)

           GGTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATT                                                                                    >  SRR4302535.4236183/1‑94 (MQ=60)

            GTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTC                                                                                   <  SRR4302535.3029293/94‑1 (MQ=60)

              CAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCAC                                                                                 >  SRR4302535.3353017/1‑94 (MQ=60)

              CAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCAC                                                                                 >  SRR4302535.3651013/1‑94 (MQ=60)

               AGGGCAATATTATCGAAGATGCAGCGATTGCCACACGTCAAACTGACATCGCGCATATCGACTAAATTCGCCACAGGCCGCTCAATAATTCACC                                                                                >  SRR4302535.2067421/1‑94 (MQ=60)

               AGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACC                                                                                >  SRR4302535.981183/1‑94 (MQ=60)

               AGGGAAATATTATCGAAGATGCAGCGATTGCCACGAATAAAACTGACATCGCGCATATCGACTAAATTCGCCGCAGACCGCTCCATAATTCGCC                                                                                <  SRR4302535.1662295/94‑1 (MQ=60)

                GGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCC                                                                               >  SRR4302535.2193769/1‑94 (MQ=60)

                GGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCC                                                                               >  SRR4302535.4020871/1‑94 (MQ=60)

                 GGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCT                                                                              <  SRR4302535.2567294/94‑1 (MQ=60)

                 GGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCT                                                                              >  SRR4302535.3791294/1‑94 (MQ=60)

                   AAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTC                                                                            >  SRR4302535.349537/1‑94 (MQ=60)

                    AATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCG                                                                           >  SRR4302535.2669530/1‑94 (MQ=60)

                     ATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGT                                                                          >  SRR4302535.1559478/1‑94 (MQ=60)

                       ATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCT                                                                        >  SRR4302535.3032531/1‑94 (MQ=60)

                       ATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCT                                                                        >  SRR4302535.212581/1‑94 (MQ=60)

                       ATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCT                                                                        <  SRR4302535.2222121/94‑1 (MQ=60)

                        TTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTT                                                                       >  SRR4302535.1253972/1‑94 (MQ=60)

                          ATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGC                                                                     <  SRR4302535.1069950/94‑1 (MQ=60)

                             GAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTT                                                                  <  SRR4302535.1381772/94‑1 (MQ=60)

                              AAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTG                                                                 >  SRR4302535.874424/1‑94 (MQ=60)

                              AAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTG                                                                 >  SRR4302535.2095725/1‑94 (MQ=60)

                                 ATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATT                                                              >  SRR4302535.2199016/1‑94 (MQ=60)

                                 ATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATT                                                              >  SRR4302535.3036055/1‑94 (MQ=60)

                                  TGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTT                                                             <  SRR4302535.418692/94‑1 (MQ=60)

                                  TGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTT                                                             <  SRR4302535.2815466/94‑1 (MQ=60)

                                  TGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTT                                                             >  SRR4302535.1612815/1‑94 (MQ=60)

                                   GCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTT                                                            >  SRR4302535.493362/1‑94 (MQ=60)

                                    CAGCGATTGCCACGCGTAAAACTGACGTCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTC                                                           <  SRR4302535.2226583/94‑1 (MQ=60)

                                    CAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTC                                                           <  SRR4302535.768331/94‑1 (MQ=60)

                                     AGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCT                                                          >  SRR4302535.3087121/1‑94 (MQ=60)

                                     AGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCT                                                          <  SRR4302535.3311762/94‑1 (MQ=60)

                                      GCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTA                                                         >  SRR4302535.1814050/1‑94 (MQ=60)

                                        GATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAGG                                                       <  SRR4302535.4454742/94‑1 (MQ=60)

                                        GATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAG                                                       >  SRR4302535.1185437/1‑94 (MQ=60)

                                        GATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAG                                                       >  SRR4302535.4520181/1‑94 (MQ=60)

                                        GATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACACACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAG                                                       <  SRR4302535.2540386/94‑1 (MQ=60)

                                        GATTGCCACGCGGAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAG                                                       <  SRR4302535.784065/94‑1 (MQ=60)

                                         ATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGCACGATCCATAATTCACCCTTCGTCTTGCGTTTATTTTCTTAGC                                                      >  SRR4302535.3474695/1‑94 (MQ=60)

                                         ATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGC                                                      <  SRR4302535.2552843/94‑1 (MQ=60)

                                           TGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCAT                                                    <  SRR4302535.4499340/94‑1 (MQ=60)

                                            TCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATG                                                   <  SRR4302535.4159906/94‑1 (MQ=60)

                                            GCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATG                                                   <  SRR4302535.769306/94‑1 (MQ=60)

                                             CCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGG                                                  <  SRR4302535.4285649/94‑1 (MQ=60)

                                             CCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGG                                                  >  SRR4302535.3103595/1‑94 (MQ=60)

                                              CACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGC                                                 <  SRR4302535.3116603/94‑1 (MQ=60)

                                              CACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGC                                                 >  SRR4302535.2195725/1‑94 (MQ=60)

                                              CACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGC                                                 <  SRR4302535.3380397/94‑1 (MQ=60)

                                               ACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCG                                                <  SRR4302535.1250589/94‑1 (MQ=60)

                                               ACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCG                                                <  SRR4302535.4091959/94‑1 (MQ=60)

                                                 GCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCT                                              <  SRR4302535.97677/94‑1 (MQ=60)

                                                  CGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTC                                             >  SRR4302535.1492397/1‑94 (MQ=60)

                                                  CGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTC                                             >  SRR4302535.1592742/1‑94 (MQ=60)

                                                  CGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTC                                             >  SRR4302535.1646199/1‑94 (MQ=60)

                                                  CGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTA                                             >  SRR4302535.2712887/1‑94 (MQ=60)

                                                     AAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAAT                                          >  SRR4302535.3370622/1‑94 (MQ=60)

                                                      AAACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATT                                         >  SRR4302535.1179182/1‑94 (MQ=60)

                                                       AACTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTT                                        >  SRR4302535.4223133/1‑94 (MQ=60)

                                                         CTGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAA                                      <  SRR4302535.1608732/94‑1 (MQ=60)

                                                          TGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCCCCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAAC                                     <  SRR4302535.2691997/94‑1 (MQ=60)

                                                          TGACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAAC                                     <  SRR4302535.3713241/94‑1 (MQ=60)

                                                           GACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACC                                    <  SRR4302535.879123/94‑1 (MQ=60)

                                                           GACATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACC                                    <  SRR4302535.2851647/94‑1 (MQ=60)

                                                             CATCGCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTT                                  <  SRR4302535.2822189/94‑1 (MQ=60)

                                                                 GCGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAAC                              <  SRR4302535.163926/94‑1 (MQ=60)

                                                                  CGCATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACC                             >  SRR4302535.3869805/1‑94 (MQ=60)

                                                                    CTTATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCA                           >  SRR4302535.3519813/1‑94 (MQ=60)

                                                                     ATATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAA                          <  SRR4302535.4055808/94‑1 (MQ=60)

                                                                      TATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAAC                         >  SRR4302535.2566603/1‑94 (MQ=60)

                                                                      TATCGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAAC                         <  SRR4302535.4199764/94‑1 (MQ=60)

                                                                         CGACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATA                      <  SRR4302535.479388/94‑1 (MQ=60)

                                                                          GACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATAT                     >  SRR4302535.3656025/1‑94 (MQ=60)

                                                                          GACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATAT                     <  SRR4302535.1078106/94‑1 (MQ=60)

                                                                          GACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATAT                     <  SRR4302535.1217349/94‑1 (MQ=60)

                                                                          GACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATAT                     <  SRR4302535.3396432/94‑1 (MQ=60)

                                                                           ACTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATT                    <  SRR4302535.45139/94‑1 (MQ=60)

                                                                            CTNANTNCGCCACAGACCGCTCNATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACNTTGAACCCAACATATTT                   <  SRR4302535.3070288/94‑1 (MQ=60)

                                                                            CTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTT                   <  SRR4302535.4142937/94‑1 (MQ=60)

                                                                            CTAAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTT                   >  SRR4302535.3576329/1‑94 (MQ=60)

                                                                              AAATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTAC                 <  SRR4302535.2450373/94‑1 (MQ=60)

                                                                               AATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACA                <  SRR4302535.2313812/94‑1 (MQ=60)

                                                                                ATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAG               <  SRR4302535.2072884/94‑1 (MQ=60)

                                                                                ATTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAG               <  SRR4302535.358061/94‑1 (MQ=60)

                                                                                 TTCGCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGA              <  SRR4302535.2428060/94‑1 (MQ=60)

                                                                                    GCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATA           >  SRR4302535.3609678/1‑94 (MQ=60)

                                                                                    GCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATA           <  SRR4302535.1165927/94‑1 (MQ=60)

                                                                                    GCCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATA           <  SRR4302535.83211/94‑1 (MQ=60)

                                                                                     CCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCTTGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATAT          <  SRR4302535.3327659/94‑1 (MQ=60)

                                                                                     CCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATAT          <  SRR4302535.804273/94‑1 (MQ=60)

                                                                                     CCACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATAT          >  SRR4302535.333968/1‑94 (MQ=60)

                                                                                      CACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATT         <  SRR4302535.2713149/94‑1 (MQ=60)

                                                                                      CACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATT         >  SRR4302535.4417866/1‑94 (MQ=60)

                                                                                       ACAGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATTA        <  SRR4302535.373738/94‑1 (MQ=60)

                                                                                         AGACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATTACC      >  SRR4302535.4687841/1‑94 (MQ=60)

                                                                                          GACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATTACCC     <  SRR4302535.3673949/94‑1 (MQ=60)

                                                                                           ACCGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATTACCCG    <  SRR4302535.3543209/94‑1 (MQ=60)

                                                                                             CGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATTACCCGCC  >  SRR4302535.758324/1‑94 (MQ=60)

                                                                                             CGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATTACCCGCC  <  SRR4302535.2436380/94‑1 (MQ=60)

CCTCGCGGCACGGTCAGGGAAATATTATCGAAGATGCAGCGATTGCCACGCGTAAAACTGACATCGCGCATATCGACTAAATTCGCCACAGACTGCTCCATAATTCACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGCGCTCAATTTAACCTTGAACCCAACATATTTACAGAATATTACCCGCC  >  NC_000913/3337606‑3337792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`