Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,339,304	+C	coding (398/987 nt)	yrbH →	putative isomerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,339,301	1	.	C	98.4%	747.3 / 3.5	242	coding (395/987 nt)	yrbH	putative isomerase
Reads supporting (aligned to +/- strand): ref base . (1/3); new base C (138/100); total (139/103)
Fisher's exact test for biased strand distribution p-value = 3.15e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 264 total aligned reads displayed.

GCTATCTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑CCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGAC  >  NC_000913/3339210‑3339388

gCTATCTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑c                                                                                         <  2:269854/93‑1 (MQ=255)

  tATCTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑ccc                                                                                       >  1:4127173/1‑93 (MQ=255)

  tATCTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑ccc                                                                                       >  1:4286164/1‑93 (MQ=255)

  tATCTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑ccc                                                                                       <  2:646502/93‑1 (MQ=255)

   aTCTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑cccc                                                                                      >  2:1451707/1‑92 (MQ=255)

    tctcTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑ccccg                                                                                     >  1:2601786/1‑91 (MQ=255)

    tctcTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑ccccg                                                                                     >  1:1357160/1‑91 (MQ=255)

     ctctAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGTATCACCGGTCG‑ccccgg                                                                                    >  1:3184319/1‑90 (MQ=255)

      tctAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑ccccgga                                                                                   >  2:2663725/1‑89 (MQ=255)

        tAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑Ggaga                                                                                 >  2:1222692/1‑93 (MQ=255)

          aCTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTGTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGagc                                                                               >  1:2349363/1‑93 (MQ=255)

          aCTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGagc                                                                               >  1:4649374/1‑93 (MQ=255)

          aCTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGagc                                                                               <  1:3090540/93‑1 (MQ=255)

          aCTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGagc                                                                               >  1:2853029/1‑93 (MQ=255)

            tctGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGagcag                                                                             >  1:3510229/1‑93 (MQ=255)

             ctGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGagcagc                                                                            <  2:2248977/93‑1 (MQ=255)

              tGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAgcagca                                                                           <  1:3939541/93‑1 (MQ=255)

              tGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAgcagca                                                                           >  1:2172611/1‑93 (MQ=255)

               ggTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTCCCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCAt                                                                          <  2:1123299/93‑1 (MQ=255)

               ggTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCAt                                                                          <  1:4020333/93‑1 (MQ=255)

               ggTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCAt                                                                          >  2:4221328/1‑93 (MQ=255)

                   aaTCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑CCCTGGAGAGCAGCATGgcg                                                                      >  1:1753176/1‑93 (MQ=255)

                     tCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGgcgcg                                                                    >  2:1831525/1‑93 (MQ=255)

                     tCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGgcgcg                                                                    >  1:1938192/1‑93 (MQ=255)

                       cAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGgcgcgcg                                                                  >  2:780897/1‑93 (MQ=255)

                       cAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGgcgcgcg                                                                  <  1:225404/93‑1 (MQ=255)

                         gCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGcgcc                                                                >  1:2064116/1‑93 (MQ=255)

                          cGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGcgccg                                                               <  2:4395672/93‑1 (MQ=255)

                           gAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGcgccgt                                                              >  2:1507021/1‑92 (MQ=255)

                           gAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGcgccgc                                                              >  1:2298750/1‑93 (MQ=255)

                            aaaTCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCa                                                             >  1:2050338/1‑93 (MQ=255)

                            aaaTCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCa                                                             >  2:3151848/1‑93 (MQ=255)

                            aaaTCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCa                                                             <  2:1940587/93‑1 (MQ=255)

                              aTCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGa                                                           >  2:73133/1‑93 (MQ=255)

                              aTCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGa                                                           >  2:3892546/1‑93 (MQ=255)

                               tCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGAt                                                          >  2:4180818/1‑93 (MQ=255)

                                 aCGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGAtgt                                                        >  2:2302334/1‑93 (MQ=255)

                                 aCGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGAtgt                                                        >  1:4063673/1‑93 (MQ=255)

                                 aCGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGAtgt                                                        <  1:1017736/93‑1 (MQ=255)

                                 aCGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGAtgt                                                        <  1:16906/93‑1 (MQ=255)

                                 aCGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGAtgt                                                        <  1:2189702/93‑1 (MQ=255)

                                 aCGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGAtgt                                                        <  2:3472975/93‑1 (MQ=255)

                                   ggCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGc                                                      <  2:288146/93‑1 (MQ=255)

                                      cTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATc                                                   <  1:23806/93‑1 (MQ=255)

                                      cTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATc                                                   >  2:334291/1‑93 (MQ=255)

                                      cTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATc                                                   <  2:2482618/93‑1 (MQ=255)

                                      cTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATc                                                   >  2:353053/1‑93 (MQ=255)

                                      cTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATc                                                   <  1:954368/93‑1 (MQ=255)

                                           ttCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCtgtgt                                              >  2:4280822/1‑93 (MQ=255)

                                            tCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCtgtgtg                                             <  1:3407138/93‑1 (MQ=255)

                                              cAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGtt                                           >  1:3843900/1‑93 (MQ=255)

                                              cAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGtt                                           >  1:2690024/1‑93 (MQ=255)

                                              cAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGtt                                           >  1:3369823/1‑93 (MQ=255)

                                                gggCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTaa                                         >  2:2028450/3‑93 (MQ=255)

                                                gTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTaa                                         >  1:4237898/1‑93 (MQ=255)

                                                gTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTaa                                         <  2:1358737/93‑1 (MQ=255)

                                                 tGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTaaa                                        <  1:3820296/93‑1 (MQ=255)

                                                 tGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTaaa                                        <  2:1263729/93‑1 (MQ=255)

                                                 tGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTaaa                                        >  2:2849581/1‑93 (MQ=255)

                                                 tGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGCCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTaaa                                        >  1:1056205/1‑93 (MQ=255)

                                                   cTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGt                                      <  2:1771896/93‑1 (MQ=255)

                                                    ttAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTa                                     <  1:4387939/93‑1 (MQ=255)

                                                    ttAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTa                                     >  2:4543686/1‑93 (MQ=255)

                                                    ttAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTa                                     >  2:3736532/1‑93 (MQ=255)

                                                     tAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAg                                    <  1:1436408/93‑1 (MQ=255)

                                                     tAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAg                                    <  2:4032332/93‑1 (MQ=255)

                                                      aaGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGc                                   >  2:2118126/1‑93 (MQ=255)

                                                        gCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGa                                 >  2:325751/1‑93 (MQ=255)

                                                        gCGTCTTCACGTACCGTTAATATGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGa                                 >  2:2984591/1‑93 (MQ=255)

                                                          gTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGaaa                               >  2:3117207/1‑93 (MQ=255)

                                                          gTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGaaa                               <  1:793897/93‑1 (MQ=255)

                                                          gTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGaaa                               <  1:2763486/93‑1 (MQ=255)

                                                           tCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGCTGTGCATCTGTGTGTTAAAGTAGCGaaaa                              >  1:3535745/1‑92 (MQ=255)

                                                           tCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAaag                              <  2:504478/93‑1 (MQ=255)

                                                           tCTTCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAaag                              >  1:1241680/1‑93 (MQ=255)

                                                             ttCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAaagaa                            >  1:2199919/1‑93 (MQ=255)

                                                             ttCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAaagaa                            <  1:5530/93‑1 (MQ=255)

                                                             ttCACGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAaagaa                            >  2:1110246/1‑93 (MQ=255)

                                                                aCGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGcc                         >  1:3337777/1‑93 (MQ=255)

                                                                aCGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGcc                         <  2:1550517/93‑1 (MQ=255)

                                                                 cGTACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCt                        >  2:889672/1‑93 (MQ=255)

                                                                   tACCGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGt                      <  2:164979/93‑1 (MQ=255)

                                                                      cGTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCg                   >  1:4031264/1‑93 (MQ=255)

                                                                       gTTAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGt                  >  2:2535963/1‑93 (MQ=255)

                                                                         tAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTa                <  1:3201690/93‑1 (MQ=255)

                                                                         tAATCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTa                <  2:3639881/93‑1 (MQ=255)

                                                                          aaTCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAg               <  2:218390/93‑1 (MQ=255)

                                                                          aaTCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAg               <  2:240488/93‑1 (MQ=255)

                                                                          aaTCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAg               >  1:848536/1‑93 (MQ=255)

                                                                           aTCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAgg              >  1:759465/1‑93 (MQ=255)

                                                                            tCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTGCGTTAggg             >  1:1600179/1‑93 (MQ=255)

                                                                            tCTGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAggg             >  1:3059910/1‑93 (MQ=255)

                                                                              tGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCt           <  1:2464035/93‑1 (MQ=255)

                                                                              tGCATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCt           >  2:1180822/1‑93 (MQ=255)

                                                                               gCATCACCGGCCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTg          <  2:1720971/93‑1 (MQ=255)

                                                                                cATCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTgg         <  1:1461295/93‑1 (MQ=255)

                                                                                  tCACCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCa       >  1:128319/1‑93 (MQ=255)

                                                                                    aCCGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCAcc     >  2:3773123/1‑93 (MQ=255)

                                                                                     ccGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCg    >  1:98984/1‑93 (MQ=255)

                                                                                      cGGTCGCCCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGa   <  1:3588949/93‑1 (MQ=255)

GCTATCTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑CCC‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGAC  >  NC_000913/3339210‑3339388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTATCTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑CC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGACCAGCAGC  >  NC_000913/3339211‑3339395

CTATCTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑CC‑C                                                                                              >  SRR4302535.4155416/1‑94 (MQ=60)

CTATCTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑CC‑C                                                                                              >  SRR4302535.4315486/1‑94 (MQ=60)

  ATCTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑CC‑C‑CG                                                                                           >  SRR4302535.1042757/1‑94 (MQ=60)

  ATCTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑CC‑C‑CG                                                                                           >  SRR4302535.2620465/1‑94 (MQ=60)

  ATCTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑CC‑C‑CG                                                                                           >  SRR4302535.1366869/1‑94 (MQ=60)

   TCTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGTATCACCGGTCG‑CC‑Ccgg                                                                                           >  SRR4302535.3206332/1‑91 (MQ=60)

    CTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGA                                                                                          >  SRR4302535.2394257/1‑94 (MQ=60)

     TCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAG                                                                                         <  SRR4302535.2212542/94‑1 (MQ=60)

      CTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGA                                                                                        >  SRR4302535.3377286/1‑94 (MQ=60)

       TAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAG                                                                                       >  SRR4302535.2476293/1‑94 (MQ=60)

        AACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTGTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGC                                                                                      >  SRR4302535.2366209/1‑94 (MQ=60)

        AACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGC                                                                                      >  SRR4302535.4680863/1‑94 (MQ=60)

        AACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGC                                                                                      >  SRR4302535.2873242/1‑94 (MQ=60)

        AACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGC                                                                                      >  SRR4302535.3118230/1‑94 (MQ=60)

         ACTCTGGTGAATCCAGCGAAATCACGTCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCA                                                                                     <  SRR4302535.4284017/94‑1 (MQ=60)

         ACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCA                                                                                     <  SRR4302535.3112063/94‑1 (MQ=60)

          CTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAG                                                                                    <  SRR4302535.2193091/94‑1 (MQ=60)

          CTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAG                                                                                    >  SRR4302535.2209668/1‑94 (MQ=60)

          CTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAG                                                                                    >  SRR4302535.3534621/1‑94 (MQ=60)

          CTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAG                                                                                    <  SRR4302535.4698699/94‑1 (MQ=60)

            CTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCA                                                                                  >  SRR4302535.2188155/1‑94 (MQ=60)

            CTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCA                                                                                  >  SRR4302535.1509934/1‑94 (MQ=60)

            CTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑CC‑Ccggacagcatca                                                                                  >  SRR4302535.3147401/1‑82 (MQ=60)

             TGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCAT                                                                                 <  SRR4302535.3864373/94‑1 (MQ=60)

             TGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCAT                                                                                 <  SRR4302535.3397041/94‑1 (MQ=60)

             TGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCAT                                                                                 <  SRR4302535.3966427/94‑1 (MQ=60)

              GGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATG                                                                                <  SRR4302535.4047843/94‑1 (MQ=60)

               GTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGG                                                                               >  SRR4302535.412985/1‑94 (MQ=60)

                 tcttccgatctgcgtggtGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTAGCCC‑C‑GGAGAGCAGCATGGCG                                                                             >  SRR4302535.314579/19‑94 (MQ=60)

                 GAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCG                                                                             <  SRR4302535.1288436/94‑1 (MQ=60)

                 GAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑CC‑CTGGAGAGCAGCATGGCG                                                                             >  SRR4302535.1765846/1‑94 (MQ=60)

                   ATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCG                                                                           >  SRR4302535.1952145/1‑94 (MQ=60)

                    TCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGC                                                                          >  SRR4302535.3248002/1‑94 (MQ=60)

                      CAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGC                                                                        <  SRR4302535.226954/94‑1 (MQ=60)

                       AGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCC                                                                       >  SRR4302535.2078995/1‑94 (MQ=60)

                       AGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑CCTC‑GGAGAGCAGCATGGCGCGCGCC                                                                       <  SRR4302535.1623589/94‑1 (MQ=60)

                         CGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGC                                                                     >  SRR4302535.2315195/1‑94 (MQ=60)

                         CGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGC                                                                     >  SRR4302535.2718923/1‑94 (MQ=60)

                         CGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGC                                                                     >  SRR4302535.883110/1‑94 (MQ=60)

                          GAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCA                                                                    >  SRR4302535.2065101/1‑94 (MQ=60)

                           AAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGCGCAGCATGGCGCGCGCCGCAG                                                                   >  SRR4302535.3945267/1‑94 (MQ=60)

                           AAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAG                                                                   <  SRR4302535.233959/94‑1 (MQ=60)

                            AATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGA                                                                  >  SRR4302535.1922101/1‑94 (MQ=60)

                               CACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGT                                                               >  SRR4302535.4091483/1‑94 (MQ=60)

                               CACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGT                                                               >  SRR4302535.1390029/1‑94 (MQ=60)

                               CACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGT                                                               <  SRR4302535.4059494/94‑1 (MQ=60)

                               CACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGT                                                               >  SRR4302535.4049564/1‑94 (MQ=60)

                                ACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTG                                                              <  SRR4302535.1024971/94‑1 (MQ=60)

                                ACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTG                                                              >  SRR4302535.4352362/1‑94 (MQ=60)

                                ACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTG                                                              <  SRR4302535.2205293/94‑1 (MQ=60)

                                ACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTG                                                              <  SRR4302535.17032/94‑1 (MQ=60)

                                ACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTG                                                              >  SRR4302535.981329/1‑94 (MQ=60)

                                  GGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCA                                                            >  SRR4302535.2805076/1‑94 (MQ=60)

                                    CCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATC                                                          >  SRR4302535.1716800/1‑94 (MQ=60)

                                    CCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGCGCATC                                                          >  SRR4302535.2642642/1‑94 (MQ=60)

                                     CTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCT                                                         <  SRR4302535.961129/94‑1 (MQ=60)

                                     CTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCT                                                         <  SRR4302535.4383692/94‑1 (MQ=60)

                                     CTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCT                                                         <  SRR4302535.23993/94‑1 (MQ=60)

                                       TAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGT                                                       >  SRR4302535.107238/1‑94 (MQ=60)

                                         ATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGT                                                     <  SRR4302535.707884/94‑1 (MQ=60)

                                          TTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTG                                                    <  SRR4302535.957044/94‑1 (MQ=60)

                                          TTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTG                                                    <  SRR4302535.2808222/94‑1 (MQ=60)

                                           TCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGT                                                   <  SRR4302535.3430850/94‑1 (MQ=60)

                                            CCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTT                                                  >  SRR4302535.3870375/1‑94 (MQ=60)

                                            CCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTT                                                  >  SRR4302535.2709249/1‑94 (MQ=60)

                                            CCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTT                                                  >  SRR4302535.1002802/1‑94 (MQ=60)

                                            CCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTT                                                  >  SRR4302535.2310648/1‑94 (MQ=60)

                                            CCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTT                                                  >  SRR4302535.3393267/1‑94 (MQ=60)

                                             CAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTA                                                 >  SRR4302535.1326262/1‑94 (MQ=60)

                                             CAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTA                                                 <  SRR4302535.1462089/94‑1 (MQ=60)

                                             CAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTA                                                 <  SRR4302535.1083738/94‑1 (MQ=60)

                                              AGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAA                                                >  SRR4302535.4266898/1‑94 (MQ=60)

                                               GTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAA                                               >  SRR4302535.2262868/1‑94 (MQ=60)

                                               GTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGCCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAA                                               >  SRR4302535.1063716/1‑94 (MQ=60)

                                                TGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAG                                              <  SRR4302535.3846655/94‑1 (MQ=60)

                                                TGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAG                                              <  SRR4302535.3751898/94‑1 (MQ=60)

                                                TGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAG                                              <  SRR4302535.4062193/94‑1 (MQ=60)

                                                TGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAG                                              >  SRR4302535.4101506/1‑94 (MQ=60)

                                                TGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAG                                              >  SRR4302535.4555673/1‑94 (MQ=60)

                                                 GCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGT                                             <  SRR4302535.210542/94‑1 (MQ=60)

                                                 GCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGT                                             <  SRR4302535.3868838/94‑1 (MQ=60)

                                                 GCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGT                                             >  SRR4302535.2877578/1‑94 (MQ=60)

                                                  CTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTA                                            >  SRR4302535.2024804/1‑94 (MQ=60)

                                                   TTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAG                                           <  SRR4302535.3553961/94‑1 (MQ=60)

                                                   TTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAG                                           <  SRR4302535.4417954/94‑1 (MQ=60)

                                                   TTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAG                                           <  SRR4302535.4003784/94‑1 (MQ=60)

                                                    TAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGC                                          <  SRR4302535.1446670/94‑1 (MQ=60)

                                                      AGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGA                                        <  SRR4302535.217714/94‑1 (MQ=60)

                                                        CGTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAA                                      >  SRR4302535.3391631/1‑94 (MQ=60)

                                                        CGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑CCNC‑GGAGAGCAGCATNGCNCGCGCCGCNGATGTGCATCNGTGTGNTNAANTNGNGNAA                                      >  SRR4302535.94758/1‑94 (MQ=60)

                                                         GTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGCTGTGCATCTGTGTGTTAAAGTAGCGAAAA                                     >  SRR4302535.3560292/1‑94 (MQ=60)

                                                         GTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAG                                     <  SRR4302535.2783175/94‑1 (MQ=60)

                                                         GTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAG                                     >  SRR4302535.1250549/1‑94 (MQ=60)

                                                         GTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAG                                     <  SRR4302535.2077965/94‑1 (MQ=60)

                                                         GTCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAG                                     <  SRR4302535.799474/94‑1 (MQ=60)

                                                          TCTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGA                                    <  SRR4302535.2574396/94‑1 (MQ=60)

                                                           CTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAA                                   >  SRR4302535.582061/1‑94 (MQ=60)

                                                           CTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAA                                   >  SRR4302535.3105390/1‑94 (MQ=60)

                                                           CTTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAA                                   >  SRR4302535.2215601/1‑94 (MQ=60)

                                                            TTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAG                                  <  SRR4302535.5580/94‑1 (MQ=60)

                                                            TTCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAG                                  <  SRR4302535.474508/94‑1 (MQ=60)

                                                             TCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGC                                 <  SRR4302535.2607352/94‑1 (MQ=60)

                                                             TCACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGC                                 <  SRR4302535.3438279/94‑1 (MQ=60)

                                                              CACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCC                                <  SRR4302535.418698/94‑1 (MQ=60)

                                                              CACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCC                                >  SRR4302535.3613836/1‑94 (MQ=60)

                                                              CACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCC                                >  SRR4302535.2011943/1‑94 (MQ=60)

                                                              CACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCC                                >  SRR4302535.3361026/1‑94 (MQ=60)

                                                               ACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAGGTAGCGAAAGAAGCCT                               <  SRR4302535.3320473/94‑1 (MQ=60)

                                                               ACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCT                               <  SRR4302535.2382265/94‑1 (MQ=60)

                                                               ACGTACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCT                               >  SRR4302535.167206/1‑94 (MQ=60)

                                                                  TACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTC                            >  SRR4302535.1524658/1‑94 (MQ=60)

                                                                   ACCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCC                           >  SRR4302535.1396533/1‑94 (MQ=60)

                                                                    CCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCG                          >  SRR4302535.4058841/1‑94 (MQ=60)

                                                                    CCGTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCG                          <  SRR4302535.2352036/94‑1 (MQ=60)

                                                                      GTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTT                        >  SRR4302535.2889742/1‑94 (MQ=60)

                                                                      GTTAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTT                        >  SRR4302535.3534780/1‑94 (MQ=60)

                                                                        TAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAG                      <  SRR4302535.3223857/94‑1 (MQ=60)

                                                                        TAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAG                      >  SRR4302535.854504/1‑94 (MQ=60)

                                                                        TAATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAG                      <  SRR4302535.131660/94‑1 (MQ=60)

                                                                        TAATCTGCATCACCGGTCG‑CC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGG                     <  SRR4302535.852970/94‑1 (MQ=60)

                                                                         AATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGG                     >  SRR4302535.2217680/1‑94 (MQ=60)

                                                                         AATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGG                     >  SRR4302535.1768655/1‑94 (MQ=60)

                                                                         AATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGG                     >  SRR4302535.764817/1‑94 (MQ=60)

                                                                          ATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTGCGTTAGGG                    >  SRR4302535.1611722/1‑94 (MQ=60)

                                                                          ATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGG                    <  SRR4302535.823060/94‑1 (MQ=60)

                                                                          ATCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGG                    >  SRR4302535.3081311/1‑94 (MQ=60)

                                                                           TCTGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGC                   <  SRR4302535.3222436/94‑1 (MQ=60)

                                                                             TGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTG                 <  SRR4302535.2481802/94‑1 (MQ=60)

                                                                             TGCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCAGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTG                 >  SRR4302535.4309103/1‑94 (MQ=60)

                                                                              GCATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGG                <  SRR4302535.782547/94‑1 (MQ=60)

                                                                               CATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGC               <  SRR4302535.1471765/94‑1 (MQ=60)

                                                                               CATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGC               >  SRR4302535.4014549/1‑94 (MQ=60)

                                                                                ATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCA              >  SRR4302535.129224/1‑94 (MQ=60)

                                                                                ATCACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCA              >  SRR4302535.3620856/1‑94 (MQ=60)

                                                                                   ACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCG           >  SRR4302535.3523303/1‑94 (MQ=60)

                                                                                   ACCGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCG           >  SRR4302535.99683/1‑94 (MQ=60)

                                                                                     CGGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGAC         <  SRR4302535.3613844/94‑1 (MQ=60)

                                                                                      GGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGACC        <  SRR4302535.2645826/94‑1 (MQ=60)

                                                                                      GGTCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGACC        >  SRR4302535.3681738/1‑94 (MQ=60)

                                                                                        TCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGACCAG      <  SRR4302535.1235611/94‑1 (MQ=60)

                                                                                        TCGCCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGACCAG      >  SRR4302535.1061680/1‑94 (MQ=60)

                                                                                         cgcCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGACCAGC     <  SRR4302535.944048/91‑1 (MQ=60)

                                                                                          gcCC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGACCAGCA    >  SRR4302535.3475880/3‑94 (MQ=60)

                                                                                            CC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGACCAGCAGC  >  SRR4302535.2052509/1‑94 (MQ=60)

                                                                                            CC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGACCAGCAGC  >  SRR4302535.2888687/1‑94 (MQ=60)

CTATCTCTAACTCTGGTGAATCCAGCGAAATCACGGCCTTAATTCCAGTGCTTAAGCGTCTTCACGTACCGTTAATCTGCATCACCGGTCG‑CC‑C‑GGAGAGCAGCATGGCGCGCGCCGCAGATGTGCATCTGTGTGTTAAAGTAGCGAAAGAAGCCTGTCCGTTAGGGCTGGCACCGACCAGCAGC  >  NC_000913/3339211‑3339395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`