Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,374,589 |
A→G |
L156P (CTG→CCG) |
sspA ← |
stringent starvation protein A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,374,589 | 0 | A | G | 98.7%
| 472.4
/ ‑2.9
| 157 | L156P (CTG→CCG) | sspA | stringent starvation protein A |
| Reads supporting (aligned to +/- strand): ref base A (0/2); new base G (72/82); total (73/84) |
| Fisher's exact test for biased strand distribution p-value = 5.00e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.66e-01 |
Only 100 of 166 total aligned reads displayed.
TAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCAT > NC_000913/3374499‑3374679
|
taGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCggg < 1:3223007/93‑1 (MQ=255)
aGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGc < 2:230567/93‑1 (MQ=255)
aGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGc < 1:3145152/93‑1 (MQ=255)
aGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGc < 1:2772350/93‑1 (MQ=255)
gCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCt > 2:3575004/1‑93 (MQ=255)
ccTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTg > 2:4641324/1‑93 (MQ=255)
ccTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTg > 1:2868975/1‑93 (MQ=255)
cTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCCAGATAGCAATCGACCGGGCTGa > 2:2669131/1‑93 (MQ=255)
cTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGa > 2:3811408/1‑93 (MQ=255)
cTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGa > 2:4474611/1‑93 (MQ=255)
tttCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGaa > 1:3997529/1‑93 (MQ=255)
ttCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAAc > 1:2629627/1‑93 (MQ=255)
ttCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAAc > 2:1528398/1‑93 (MQ=255)
aGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCa > 2:123387/1‑93 (MQ=255)
aGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCa < 2:2734222/93‑1 (MQ=255)
aGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCa < 2:4104467/93‑1 (MQ=255)
tctTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCg > 1:1391349/1‑93 (MQ=255)
tttCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCt > 2:1756796/1‑93 (MQ=255)
tCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCa < 1:2522287/93‑1 (MQ=255)
gCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAgg < 2:3786710/93‑1 (MQ=255)
cACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGa < 2:2248494/93‑1 (MQ=255)
cgccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGaa < 2:468578/91‑1 (MQ=255)
aCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGaa > 1:4271869/1‑93 (MQ=255)
cccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAg < 2:4450372/93‑1 (MQ=255)
cccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAg < 2:4058285/93‑1 (MQ=255)
cccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAg > 2:202221/1‑93 (MQ=255)
ccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAga > 1:2231456/1‑92 (MQ=255)
ccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGt < 1:1917082/93‑1 (MQ=255)
ccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGt < 2:3377184/93‑1 (MQ=255)
cGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGCAGTa > 1:113028/1‑93 (MQ=255)
cGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTa < 1:742423/93‑1 (MQ=255)
cGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTa < 2:2560534/93‑1 (MQ=255)
cGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTa > 1:2102229/1‑93 (MQ=255)
ggCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACg > 2:3117414/1‑93 (MQ=255)
ggCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACg < 2:4331630/93‑1 (MQ=255)
ccGCTGAACTCGATGCCCAGTTGCGTCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACGCATCGCTCAGGAAGTACGGc < 2:695523/93‑1 (MQ=255)
gCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCtt < 2:2938716/93‑1 (MQ=255)
cTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGGCCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTc < 2:1329742/93‑1 (MQ=255)
cTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTc < 1:4220811/93‑1 (MQ=255)
tGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCt > 1:3605976/1‑93 (MQ=255)
tGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCt > 2:441750/1‑93 (MQ=255)
tGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCt < 2:1193829/93‑1 (MQ=255)
gAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTg > 1:4656839/1‑93 (MQ=255)
aaCTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGa < 1:1041251/93‑1 (MQ=255)
aaCTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGa < 1:2984577/93‑1 (MQ=255)
tCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCg > 1:3123947/1‑93 (MQ=255)
cGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGa < 2:4647392/93‑1 (MQ=255)
gATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGaa < 1:835130/93‑1 (MQ=255)
gATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGaa > 1:2506915/1‑93 (MQ=255)
gATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGaa < 1:521163/93‑1 (MQ=255)
gATACCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGaa < 2:3156758/93‑1 (MQ=255)
tGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGa < 1:4081920/93‑1 (MQ=255)
tGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGa > 2:497960/1‑93 (MQ=255)
tGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGa < 1:2381425/93‑1 (MQ=255)
cccAGGTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGGACGGCTTCTGACCGAAGAcc > 1:4680684/1‑93 (MQ=255)
ccAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCg < 2:847166/93‑1 (MQ=255)
cAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCgg < 2:1985259/93‑1 (MQ=255)
gTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgcg > 1:541707/1‑93 (MQ=255)
gTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgcg < 2:4396854/93‑1 (MQ=255)
cGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAAt < 2:465131/93‑1 (MQ=255)
cGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAAt < 2:859055/93‑1 (MQ=255)
ggCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATc < 2:3042635/93‑1 (MQ=255)
ggCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATc < 1:2255332/93‑1 (MQ=255)
ggCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATc > 2:2403171/1‑93 (MQ=255)
aGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGcc > 2:3214204/1‑93 (MQ=255)
gACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCca > 2:1054117/1‑93 (MQ=255)
gCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCcagca < 2:2753157/93‑1 (MQ=255)
ccACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCcagcag > 1:3520690/1‑93 (MQ=255)
ccACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCcagcag < 1:645441/93‑1 (MQ=255)
ccACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCcagcag < 2:610596/93‑1 (MQ=255)
cacaGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGt < 1:390664/93‑1 (MQ=255)
acaGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGtt > 2:4291278/1‑93 (MQ=255)
cagcagCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttc < 2:881300/93‑1 (MQ=255)
cagcagCCGAGCAAGAGAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCTCCAGCAGttc < 2:2875823/93‑1 (MQ=255)
gcagcGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttctt > 2:3212151/1‑93 (MQ=255)
cagcGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttcttc < 1:4128492/93‑1 (MQ=255)
cagcGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttcttc < 2:1762415/93‑1 (MQ=255)
agcGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTcg > 1:3503953/1‑93 (MQ=255)
gcGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTcgc < 2:1956445/93‑1 (MQ=255)
gcGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTcgc < 1:2898152/93‑1 (MQ=255)
ggAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCgcgc < 1:2498639/93‑1 (MQ=255)
gAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCa < 2:2785142/93‑1 (MQ=255)
gAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCa > 1:3920727/1‑93 (MQ=255)
aGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAg < 2:4104468/93‑1 (MQ=255)
aGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAg > 2:2277279/1‑93 (MQ=255)
acAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGt < 1:3295409/92‑1 (MQ=255)
cAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGCTCTTCGCGCAgct > 1:2593706/1‑91 (MQ=255)
cAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTCCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGtt < 2:3712463/93‑1 (MQ=255)
aaGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTg < 1:4014718/93‑1 (MQ=255)
aaTAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCt < 1:3463404/92‑1 (MQ=255)
tAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTa < 2:3675840/93‑1 (MQ=255)
aGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTAc < 2:1674635/93‑1 (MQ=255)
gCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACg < 1:1026189/93‑1 (MQ=255)
cAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGt < 2:2157565/93‑1 (MQ=255)
aaTCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTg > 1:4484512/1‑93 (MQ=255)
aTCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGGGCAATCGCCAGCAGTTCTTCGCGCGGTTGCTTACGTGc > 1:1922925/1‑93 (MQ=255)
aTCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGc < 2:2881904/93‑1 (MQ=255)
aTCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGc < 1:4037891/93‑1 (MQ=255)
aCCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCa < 1:3343543/93‑1 (MQ=255)
ccAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCAt < 1:1447983/93‑1 (MQ=255)
|
TAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCAT > NC_000913/3374499‑3374679
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTG > NC_000913/3374496‑3374682
|
ATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCG > SRR4302535.969423/1‑94 (MQ=60)
ATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCG > SRR4302535.389486/1‑94 (MQ=60)
ATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCG > SRR4302535.4281860/1‑94 (MQ=60)
ATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCG > SRR4302535.2514271/1‑94 (MQ=60)
ATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCG > SRR4302535.4406479/1‑94 (MQ=60)
ATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCG < SRR4302535.667457/94‑1 (MQ=60)
TATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGG > SRR4302535.2477068/1‑94 (MQ=60)
ATAGCCTTTCAGCTCTTTAGCACCCGGGCCGCTCAACTCGATGCCCAGTTGCGGCAGACGCCCCAGCAGCGGAGCAAGATAGCAATCGACCGGG > SRR4302535.463237/1‑94 (MQ=60)
TAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGC < SRR4302535.3245350/94‑1 (MQ=60)
AGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCCCAGCAGCGGAGCAAGATAGCAATCGATCGGGCT > SRR4302535.518854/1‑94 (MQ=60)
AGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCT < SRR4302535.3167025/94‑1 (MQ=60)
AGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCT < SRR4302535.2792091/94‑1 (MQ=60)
AGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCT < SRR4302535.2033835/94‑1 (MQ=60)
GCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTG < SRR4302535.3388108/94‑1 (MQ=60)
GCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTG > SRR4302535.2889294/1‑94 (MQ=60)
CTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAA > SRR4302535.4024880/1‑94 (MQ=60)
TTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAAC > SRR4302535.2648469/1‑94 (MQ=60)
CAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCA < SRR4302535.1124649/94‑1 (MQ=60)
AGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCAT > SRR4302535.2609047/1‑94 (MQ=60)
CTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCG > SRR4302535.1401280/1‑94 (MQ=60)
CTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCG > SRR4302535.3970101/1‑94 (MQ=60)
CTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCCGGCTGAACTCATCG > SRR4302535.2211285/1‑94 (MQ=60)
TTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTC > SRR4302535.2862588/1‑94 (MQ=60)
TCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAG < SRR4302535.2540464/94‑1 (MQ=60)
TCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAG < SRR4302535.2401070/94‑1 (MQ=60)
GCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGA < SRR4302535.640353/94‑1 (MQ=60)
CACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAA > SRR4302535.4301114/1‑94 (MQ=60)
CCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGA > SRR4302535.2247323/1‑94 (MQ=60)
CCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGCAGTA > SRR4302535.113820/1‑94 (MQ=60)
CCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTA > SRR4302535.2117391/1‑94 (MQ=60)
CCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTA < SRR4302535.1930893/94‑1 (MQ=60)
CGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTAC < SRR4302535.747637/94‑1 (MQ=60)
CGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTT > SRR4302535.3505888/1‑94 (MQ=60)
CTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCT < SRR4302535.4249693/94‑1 (MQ=60)
CTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCT > SRR4302535.3630990/1‑94 (MQ=60)
TGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTG > SRR4302535.4688350/1‑94 (MQ=60)
GAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGA > SRR4302535.4090830/1‑94 (MQ=60)
AACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAC < SRR4302535.1048635/94‑1 (MQ=60)
AACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAC < SRR4302535.3005512/94‑1 (MQ=60)
CTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCG > SRR4302535.3145705/1‑94 (MQ=60)
CGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAA > SRR4302535.2524989/1‑94 (MQ=60)
CGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAA > SRR4302535.47137/1‑94 (MQ=60)
GATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAG < SRR4302535.840987/94‑1 (MQ=60)
GATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAG < SRR4302535.524808/94‑1 (MQ=60)
TGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGAC < SRR4302535.4109839/94‑1 (MQ=60)
TGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGAC < SRR4302535.2398526/94‑1 (MQ=60)
GCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACC > SRR4302535.661183/1‑94 (MQ=60)
GCCCAGGTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGGACGGCTTCTGACCGAAGACC > SRR4302535.4712302/1‑94 (MQ=60)
CCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCG > SRR4302535.3286572/1‑94 (MQ=60)
AGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCG > SRR4302535.4133475/1‑94 (MQ=60)
AGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCG > SRR4302535.545491/1‑94 (MQ=60)
CGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATC < SRR4302535.2650990/94‑1 (MQ=60)
GGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCG < SRR4302535.2271388/94‑1 (MQ=60)
AGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCA > SRR4302535.1673000/1‑94 (MQ=60)
GCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAG > SRR4302535.3545142/1‑94 (MQ=60)
GCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGAAG < SRR4302535.4294925/94‑1 (MQ=60)
CCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGT < SRR4302535.649944/94‑1 (MQ=60)
CACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTT < SRR4302535.393386/94‑1 (MQ=60)
CACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTT > SRR4302535.3039221/1‑94 (MQ=60)
CAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCG > SRR4302535.3528304/1‑94 (MQ=60)
CAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCG < SRR4302535.4156743/94‑1 (MQ=60)
GCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCG < SRR4302535.2918649/94‑1 (MQ=60)
GGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCA > SRR4302535.3947534/1‑94 (MQ=60)
GGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCA < SRR4302535.2516665/94‑1 (MQ=60)
AGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGT > SRR4302535.1445257/1‑94 (MQ=60)
GCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGCTCTTCGCGCAGCT > SRR4302535.2612338/1‑94 (MQ=60)
ACAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTT < SRR4302535.3318319/94‑1 (MQ=60)
CAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTG < SRR4302535.3170296/94‑1 (MQ=60)
AAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGC < SRR4302535.4042175/94‑1 (MQ=60)
AAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGC > SRR4302535.3004667/1‑94 (MQ=60)
AGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCT < SRR4302535.3688173/94‑1 (MQ=60)
GATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTT < SRR4302535.2300155/94‑1 (MQ=60)
AATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTT < SRR4302535.3487477/94‑1 (MQ=60)
AGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACG < SRR4302535.40304/94‑1 (MQ=60)
AGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTATGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACG > SRR4302535.2528747/1‑94 (MQ=60)
GCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGT < SRR4302535.1033477/94‑1 (MQ=60)
CAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTG > SRR4302535.967439/1‑94 (MQ=60)
CAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTG > SRR4302535.4515299/1‑94 (MQ=60)
AATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGGGCAATCGCCAGCAGTTCTTCGCGCGGTTGCTTACGTGC > SRR4302535.1936785/1‑94 (MQ=60)
AATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGC > SRR4302535.3588949/1‑94 (MQ=60)
ATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCG < SRR4302535.4065530/94‑1 (MQ=60)
ATAGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCG < SRR4302535.4350985/94‑1 (MQ=60)
ACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCAT > SRR4302535.3641820/1‑94 (MQ=60)
ACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCAT < SRR4302535.3366837/94‑1 (MQ=60)
ACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTACGCGCAGTTGCTTACGTGCGGCAT > SRR4302535.3641821/1‑94 (MQ=60)
CCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATC < SRR4302535.1458336/94‑1 (MQ=60)
CGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCT < SRR4302535.2681932/94‑1 (MQ=60)
GGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTG > SRR4302535.613687/1‑94 (MQ=60)
GGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTG < SRR4302535.1151834/94‑1 (MQ=60)
GGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTG > SRR4302535.4057126/1‑94 (MQ=60)
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ATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTG > NC_000913/3374496‑3374682
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
