Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,374,589 |
A→G |
L156P (CTG→CCG) |
sspA ← |
stringent starvation protein A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,374,589 | 0 | A | G | 99.3%
| 887.3
/ ‑3.5
| 288 | L156P (CTG→CCG) | sspA | stringent starvation protein A |
| Reads supporting (aligned to +/- strand): ref base A (0/2); new base G (138/148); total (138/150) |
| Fisher's exact test for biased strand distribution p-value = 4.99e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.15e-01 |
Only 100 of 305 total aligned reads displayed.
TAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCA > NC_000913/3374499‑3374678
|
taGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCggg > 1:3266351/1‑93 (MQ=255)
aGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGc < 2:2093002/93‑1 (MQ=255)
gCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCt < 1:6600024/93‑1 (MQ=255)
gCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCt < 1:2246502/93‑1 (MQ=255)
ccTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTg > 1:2173452/1‑93 (MQ=255)
ccTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTg < 1:2452099/93‑1 (MQ=255)
cTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGa > 2:3391786/1‑93 (MQ=255)
tttCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGaa > 1:3812412/1‑93 (MQ=255)
ttCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAAc < 2:442323/93‑1 (MQ=255)
tCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACt > 1:6194356/1‑93 (MQ=255)
aGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCa < 2:2885722/93‑1 (MQ=255)
gtctTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATc < 1:4591961/92‑1 (MQ=255)
ctctTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATc < 2:7282157/93‑1 (MQ=255)
ctctTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATc < 1:5665212/93‑1 (MQ=255)
tctTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATcc > 1:3301874/1‑92 (MQ=255)
tctTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATcc > 1:2310187/1‑92 (MQ=255)
tctTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCg > 1:4067348/1‑93 (MQ=255)
tttCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCt < 2:1384455/93‑1 (MQ=255)
tttCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCt > 2:2573821/1‑93 (MQ=255)
tttCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCt < 1:3043161/93‑1 (MQ=255)
tttCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCt > 2:6716033/1‑93 (MQ=255)
ttCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTc < 1:626611/93‑1 (MQ=255)
ccccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGaa < 2:3190114/92‑1 (MQ=255)
ccccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGaa < 1:5804576/92‑1 (MQ=255)
aCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGaa > 2:2386076/1‑93 (MQ=255)
aCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGaa < 1:7451155/93‑1 (MQ=255)
aCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGaa > 1:843012/1‑93 (MQ=255)
cccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAg > 2:2466100/1‑93 (MQ=255)
cGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTa > 1:4368354/1‑93 (MQ=255)
cGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTa < 2:1626564/93‑1 (MQ=255)
gggCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTAc < 1:7589273/93‑1 (MQ=255)
gggCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTAc > 2:4814401/1‑93 (MQ=255)
ggCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCAACGCTCAGGAAGTACg > 2:5604008/1‑93 (MQ=255)
ccGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGc > 2:4089748/1‑93 (MQ=255)
gCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCtt > 2:3472796/1‑93 (MQ=255)
tGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCt > 1:2745225/1‑93 (MQ=255)
aaCTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGa > 2:12069/1‑93 (MQ=255)
aaCTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGa < 1:6386315/93‑1 (MQ=255)
aaCTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGa < 1:1219654/93‑1 (MQ=255)
aaCTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGa > 1:2705242/1‑93 (MQ=255)
aaCTCGATGCCCAGTTGCGGCAGACGCAACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGa < 2:6902593/93‑1 (MQ=255)
aCTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAc < 1:7115644/93‑1 (MQ=255)
aCTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAc > 1:2923954/1‑93 (MQ=255)
cGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGa > 2:1060140/1‑93 (MQ=255)
gATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGaa > 2:566213/1‑93 (MQ=255)
tGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGa > 2:5363262/1‑93 (MQ=255)
gCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGAc < 1:1461201/93‑1 (MQ=255)
gCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGAc < 1:7783401/93‑1 (MQ=255)
gCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGAc < 2:1747484/93‑1 (MQ=255)
ccAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCg > 2:1776678/1‑93 (MQ=255)
gTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCgggg > 2:4263548/1‑91 (MQ=255)
ttGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgcgc > 2:3156915/1‑93 (MQ=255)
cGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAAt < 2:71215/93‑1 (MQ=255)
cGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAAt < 2:3949118/93‑1 (MQ=255)
ggCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATc < 2:7429543/93‑1 (MQ=255)
aGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGcc > 2:3747817/1‑93 (MQ=255)
gACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCca < 2:526705/93‑1 (MQ=255)
cGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCcagc > 2:6787010/1‑93 (MQ=255)
cGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCcagc < 2:7365456/93‑1 (MQ=255)
cacaGCAGCGCAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGt < 2:3579374/93‑1 (MQ=255)
acaGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGtt < 1:4435267/93‑1 (MQ=255)
cagcagCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttc < 1:1079588/93‑1 (MQ=255)
cagcagCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttc < 1:1680966/93‑1 (MQ=255)
agcagcGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttct > 1:3635448/1‑93 (MQ=255)
gcagcGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttctt > 2:7476458/1‑93 (MQ=255)
gcagcGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttctt < 1:4724439/93‑1 (MQ=255)
cagcGGAGCAAGATAGCCATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttcttc < 1:7048015/93‑1 (MQ=255)
agcGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGACGACCGGGGCAATCGCCACAAGttcttct > 2:3701905/1‑92 (MQ=255)
ggAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTgcgcgc > 2:1870882/1‑93 (MQ=255)
gCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGt < 1:2606952/93‑1 (MQ=255)
gCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGt > 1:4313794/1‑93 (MQ=255)
cAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGtt < 1:1906078/93‑1 (MQ=255)
aaGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTg > 1:3685296/1‑93 (MQ=255)
aaGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTg > 1:731105/1‑93 (MQ=255)
aGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGc > 2:4914146/1‑93 (MQ=255)
gATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCt < 2:6099856/93‑1 (MQ=255)
gATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCt < 2:7809607/93‑1 (MQ=255)
gATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCt < 1:340149/93‑1 (MQ=255)
tAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTa < 1:6132410/93‑1 (MQ=255)
tAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTa < 2:4328395/93‑1 (MQ=255)
tAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTa < 2:5302346/93‑1 (MQ=255)
tAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTa > 2:5829442/1‑93 (MQ=255)
tAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTa > 1:4945865/1‑93 (MQ=255)
aGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTAc < 2:7707527/93‑1 (MQ=255)
aGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTAc < 2:1945542/93‑1 (MQ=255)
gCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACg < 1:3948030/93‑1 (MQ=255)
gCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACg > 2:5957766/1‑93 (MQ=255)
gCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTACTTACg > 1:3047630/1‑93 (MQ=255)
cAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGt > 1:5970238/1‑93 (MQ=255)
cAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGt < 1:1431752/93‑1 (MQ=255)
aaacGACCGGGCGGAACTCATCGCTCAGGAAGGACGGCTTCTGACCGGAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTg > 2:641153/4‑93 (MQ=255)
aaTCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTg > 2:3554491/1‑93 (MQ=255)
aaTCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTg < 1:884739/93‑1 (MQ=255)
aTCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGc < 1:382877/93‑1 (MQ=255)
aTCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGCTGCTTACGTGc > 2:5756487/1‑93 (MQ=255)
aTCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGATCTTCGCGCAGTTGCTTACGTGc > 2:1446138/1‑93 (MQ=255)
tCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCg > 1:5206554/1‑93 (MQ=255)
cGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCgg > 2:2192225/1‑93 (MQ=255)
gACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGc > 1:1570928/1‑93 (MQ=255)
aCCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCa > 2:4745383/1‑93 (MQ=255)
|
TAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCA > NC_000913/3374499‑3374678
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTG > NC_000913/3374496‑3374682
|
ATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCG > SRR4302543.3960083/1‑94 (MQ=60)
ATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCG > SRR4302543.5755670/1‑94 (MQ=60)
TTTAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGG < SRR4302543.1444625/94‑1 (MQ=60)
TATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGG < SRR4302543.1041283/94‑1 (MQ=60)
TATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGG < SRR4302543.3688886/94‑1 (MQ=60)
TATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGACCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGG > SRR4302543.6149181/1‑94 (MQ=60)
ATAGCCTTTCAGCTCTTTCGCACCCGGGTCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGG < SRR4302543.1316927/94‑1 (MQ=60)
ATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGG > SRR4302543.6543609/1‑94 (MQ=60)
ATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGG > SRR4302543.3295869/1‑94 (MQ=60)
ATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGG < SRR4302543.7417298/94‑1 (MQ=60)
ATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGG < SRR4302543.3620819/94‑1 (MQ=60)
ATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGG > SRR4302543.4357832/1‑94 (MQ=60)
ATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGG < SRR4302543.7006909/94‑1 (MQ=60)
ATAGCCTTGCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGG < SRR4302543.966175/94‑1 (MQ=60)
AGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCT > SRR4302543.7940116/1‑94 (MQ=60)
AGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCT > SRR4302543.332958/1‑94 (MQ=60)
AGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCT > SRR4302543.6254259/1‑94 (MQ=60)
AGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCT > SRR4302543.7535959/1‑94 (MQ=60)
GCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTG < SRR4302543.4848415/94‑1 (MQ=60)
GCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTG > SRR4302543.2192922/1‑94 (MQ=60)
GCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTG < SRR4302543.6662217/94‑1 (MQ=60)
GCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTG < SRR4302543.2266892/94‑1 (MQ=60)
CCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGA < SRR4302543.2474223/94‑1 (MQ=60)
CTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAA > SRR4302543.7597738/1‑94 (MQ=60)
CTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAA > SRR4302543.3846019/1‑94 (MQ=60)
CTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAA > SRR4302543.4682381/1‑94 (MQ=60)
TTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACT > SRR4302543.6252873/1‑94 (MQ=60)
TTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACT < SRR4302543.2599566/94‑1 (MQ=60)
TTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACT > SRR4302543.6252634/1‑94 (MQ=60)
TTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACT > SRR4302543.5600001/1‑94 (MQ=60)
TCAGCTCTTTCGCCCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTC < SRR4302543.112998/94‑1 (MQ=60)
CAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGGTGATGCAGACCCCACAGCAGCGCAACAAGATAACAAACGACCGGCCTGAACTCA > SRR4302543.3826246/1‑94 (MQ=42)
cgctctatcaCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCAT < SRR4302543.2208608/84‑1 (MQ=60)
AGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCAT < SRR4302543.2715221/94‑1 (MQ=60)
GTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCG < SRR4302543.4633671/94‑1 (MQ=60)
CTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCGCAGCAGCGGAGCAAGATAGCAATCGACCCGGCTGAACTCATCG > SRR4302543.4891725/1‑94 (MQ=60)
CTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCG < SRR4302543.5716893/94‑1 (MQ=60)
CTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCG > SRR4302543.4103776/1‑94 (MQ=60)
CTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCG > SRR4302543.1576640/1‑94 (MQ=60)
CTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCG < SRR4302543.7444436/94‑1 (MQ=60)
CTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCG > SRR4302543.2456655/1‑94 (MQ=60)
CTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCC > SRR4302543.3331670/1‑94 (MQ=60)
CTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCC > SRR4302543.2331212/1‑94 (MQ=60)
TCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGC > SRR4302543.2474755/1‑94 (MQ=60)
TTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTC < SRR4302543.3070600/94‑1 (MQ=60)
TTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTC < SRR4302543.3070601/94‑1 (MQ=60)
TTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTC > SRR4302543.2330543/1‑94 (MQ=60)
TTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCA < SRR4302543.632341/94‑1 (MQ=60)
TCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAG < SRR4302543.5044492/94‑1 (MQ=60)
CGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGG > SRR4302543.6660010/1‑94 (MQ=60)
GCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGA > SRR4302543.6771857/1‑94 (MQ=60)
CACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAA > SRR4302543.1332991/1‑94 (MQ=60)
CACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAA > SRR4302543.1213774/1‑94 (MQ=60)
CACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAA > SRR4302543.850467/1‑94 (MQ=60)
CCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAG < SRR4302543.91507/94‑1 (MQ=60)
CCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAG < SRR4302543.1620865/94‑1 (MQ=60)
CCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAG < SRR4302543.5857366/94‑1 (MQ=60)
ACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAG < SRR4302543.7522557/94‑1 (MQ=60)
CCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGT < SRR4302543.3690326/94‑1 (MQ=60)
CCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTA > SRR4302543.4407922/1‑94 (MQ=60)
CCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAACTA > SRR4302543.723454/1‑94 (MQ=60)
CGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTAC < SRR4302543.1469764/94‑1 (MQ=60)
GGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACG < SRR4302543.7661387/94‑1 (MQ=60)
CCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCT < SRR4302543.4400095/94‑1 (MQ=60)
CCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCT < SRR4302543.7137137/94‑1 (MQ=60)
CGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTT > SRR4302543.232529/1‑94 (MQ=60)
GCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTC < SRR4302543.4334240/94‑1 (MQ=60)
CTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCT < SRR4302543.3493329/94‑1 (MQ=60)
CTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCT > SRR4302543.2770182/1‑94 (MQ=60)
CTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACGCATCGCTCAGGAAGTACGGCTTCT < SRR4302543.3493330/94‑1 (MQ=60)
TGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTG < SRR4302543.4527125/94‑1 (MQ=60)
GAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGA > SRR4302543.2729790/1‑94 (MQ=60)
GAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGA > SRR4302543.2139991/1‑94 (MQ=60)
GAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGA > SRR4302543.6142899/1‑94 (MQ=60)
AACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAC < SRR4302543.6446422/94‑1 (MQ=60)
AACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAC < SRR4302543.1230618/94‑1 (MQ=60)
AACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAC < SRR4302543.6528702/94‑1 (MQ=60)
AACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAC > SRR4302543.2950512/1‑94 (MQ=60)
ACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACC > SRR4302543.1547221/1‑94 (MQ=60)
ACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACC < SRR4302543.7184766/94‑1 (MQ=60)
ACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACC < SRR4302543.4172474/94‑1 (MQ=60)
CGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAA > SRR4302543.1332058/1‑94 (MQ=60)
CGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAA < SRR4302543.3947313/94‑1 (MQ=60)
TGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTGCGGCTTCTGACCGAAGAC > SRR4302543.3399459/1‑94 (MQ=60)
TGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGAC < SRR4302543.6437/94‑1 (MQ=60)
TGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGAC < SRR4302543.401614/94‑1 (MQ=60)
GCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACC < SRR4302543.7856784/94‑1 (MQ=60)
GCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACC < SRR4302543.3904888/94‑1 (MQ=60)
GCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACC > SRR4302543.608497/1‑94 (MQ=60)
GCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACC < SRR4302543.1474376/94‑1 (MQ=60)
CCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCG < SRR4302543.7327530/94‑1 (MQ=60)
CCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGG < SRR4302543.7935976/94‑1 (MQ=60)
AGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCG > SRR4302543.274595/1‑94 (MQ=60)
GCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAAT < SRR4302543.272244/94‑1 (MQ=60)
GCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAAT > SRR4302543.7096377/1‑94 (MQ=60)
GGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCG < SRR4302543.2215001/94‑1 (MQ=60)
GCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGC > SRR4302543.5128297/1‑94 (MQ=60)
CAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCC > SRR4302543.877300/1‑94 (MQ=60)
AGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCA < SRR4302543.7808812/94‑1 (MQ=60)
GACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAG < SRR4302543.5745753/94‑1 (MQ=60)
CGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCA < SRR4302543.2735732/94‑1 (MQ=60)
CGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCA > SRR4302543.2986057/1‑94 (MQ=60)
CGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCA > SRR4302543.1924113/1‑94 (MQ=60)
GCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAG > SRR4302543.321533/1‑94 (MQ=60)
GCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAG < SRR4302543.1921035/94‑1 (MQ=60)
GCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAG < SRR4302543.5682379/94‑1 (MQ=60)
CCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGT < SRR4302543.5797649/94‑1 (MQ=60)
CCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGT < SRR4302543.2900977/94‑1 (MQ=60)
CACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGGAGACCGGCGCAATCGCCAGCAGGT > SRR4302543.2873313/1‑94 (MQ=60)
ACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTC < SRR4302543.4475435/94‑1 (MQ=60)
CAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCT < SRR4302543.1089296/94‑1 (MQ=60)
CAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCT < SRR4302543.1696049/94‑1 (MQ=60)
CAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCT > SRR4302543.3667442/1‑94 (MQ=60)
AGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTT > SRR4302543.7150990/1‑94 (MQ=60)
AGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTT > SRR4302543.3253146/1‑94 (MQ=60)
GCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTC < SRR4302543.4767602/94‑1 (MQ=60)
CAGCGGAGCAAGATAGCCATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCG < SRR4302543.7116362/94‑1 (MQ=60)
GCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCG < SRR4302543.5965699/94‑1 (MQ=60)
GCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCG < SRR4302543.4662552/94‑1 (MQ=60)
CGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGC > SRR4302543.3850564/1‑94 (MQ=60)
CGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGC > SRR4302543.3071225/1‑94 (MQ=60)
CGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGC > SRR4302543.3000220/1‑94 (MQ=60)
CGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGCTCTTCGCGC > SRR4302543.3850563/1‑94 (MQ=60)
AGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGT > SRR4302543.4352976/1‑94 (MQ=60)
AGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGT < SRR4302543.4445507/94‑1 (MQ=60)
AGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGGTCTTCGCGCGGT > SRR4302543.6295033/1‑94 (MQ=60)
GCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTT < SRR4302543.2630633/94‑1 (MQ=60)
GCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTT < SRR4302543.1791019/94‑1 (MQ=60)
GCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTT < SRR4302543.4033427/94‑1 (MQ=60)
GCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTT < SRR4302543.6351855/94‑1 (MQ=60)
CAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTG < SRR4302543.1923244/94‑1 (MQ=60)
CAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTG > SRR4302543.737658/1‑94 (MQ=60)
CAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTG > SRR4302543.862190/1‑94 (MQ=60)
CAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTG > SRR4302543.3717677/1‑94 (MQ=60)
CAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTG > SRR4302543.3316612/1‑94 (MQ=60)
AAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGC > SRR4302543.2472939/1‑94 (MQ=60)
AGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCT > SRR4302543.7718146/1‑94 (MQ=60)
GATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTT < SRR4302543.3578487/94‑1 (MQ=60)
GATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTT < SRR4302543.343282/94‑1 (MQ=60)
GATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTT < SRR4302543.5979368/94‑1 (MQ=60)
ATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTA > SRR4302543.4990908/1‑94 (MQ=60)
TAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTAC < SRR4302543.3700517/94‑1 (MQ=60)
TAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTAC < SRR4302543.6190495/94‑1 (MQ=60)
TAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTAC < SRR4302543.6241180/94‑1 (MQ=60)
AGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACG < SRR4302543.3419155/94‑1 (MQ=60)
AGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACG > SRR4302543.14727/1‑94 (MQ=60)
AGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACG < SRR4302543.4448367/94‑1 (MQ=60)
AGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTACTTACG > SRR4302543.3075099/1‑94 (MQ=60)
GCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGT < SRR4302543.3982936/94‑1 (MQ=60)
GCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGT > SRR4302543.6024911/1‑94 (MQ=60)
CAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTG < SRR4302543.1444698/94‑1 (MQ=60)
AATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGatggtttagtgc > SRR4302543.7387752/1‑82 (MQ=60)
AATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGC < SRR4302543.892578/94‑1 (MQ=60)
ATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCG < SRR4302543.386412/94‑1 (MQ=60)
ATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCG < SRR4302543.4613737/94‑1 (MQ=60)
ATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCG > SRR4302543.5253480/1‑94 (MQ=60)
CGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGC > SRR4302543.3744121/1‑94 (MQ=60)
CGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGC > SRR4302543.1584950/1‑94 (MQ=60)
CCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATC < SRR4302543.2381655/94‑1 (MQ=60)
CGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCT < SRR4302543.630728/94‑1 (MQ=60)
CGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCT > SRR4302543.6376726/1‑94 (MQ=60)
CGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCT > SRR4302543.1579542/1‑94 (MQ=60)
CGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCT < SRR4302543.7082187/94‑1 (MQ=60)
GGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTG > SRR4302543.253719/1‑94 (MQ=60)
GGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTG > SRR4302543.3691084/1‑94 (MQ=60)
GGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTG < SRR4302543.917514/94‑1 (MQ=60)
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ATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTG > NC_000913/3374496‑3374682
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
