Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,418,840 |
+G |
coding (1070/1089 nt) |
b3269 → |
putative transport system permease protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,418,837 | 1 | . | G | 100.0%
| 608.7
/ NA
| 192 | T356R (ACG→AGG) | b3269 | putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (111/81); total (111/81) |
Only 100 of 219 total aligned reads displayed.
GTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAC > NC_000913/3418745‑3418924
|
gTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAc > 1:819452/1‑93 (MQ=255)
aTCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg > 2:2859367/1‑93 (MQ=255)
aTCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg > 2:4524905/1‑93 (MQ=255)
aTCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg < 1:932270/93‑1 (MQ=255)
tctcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg‑g > 1:1037905/1‑93 (MQ=255)
tcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg‑ggc > 2:514294/1‑91 (MQ=255)
tcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg‑ggc < 2:4345411/93‑3 (MQ=255)
aaCATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg‑ggcaa > 2:3112559/1‑89 (MQ=255)
aaCATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg‑ggcaa < 2:302486/93‑5 (MQ=255)
aaCATCGCAAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg‑ggcaa < 2:3228748/93‑5 (MQ=255)
aTCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGcc > 2:221189/1‑93 (MQ=255)
cGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCAt < 1:2110666/93‑1 (MQ=255)
cGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCAt < 2:2430590/93‑1 (MQ=255)
gTCAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATc < 2:2507109/93‑1 (MQ=255)
gTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATc < 2:1828589/93‑1 (MQ=255)
tCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCg > 1:2265/1‑93 (MQ=255)
cAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCga < 2:4393194/93‑1 (MQ=255)
cAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCga > 1:2174485/1‑93 (MQ=255)
cAAAAACTCCTCTCTGGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCga < 1:4646957/93‑1 (MQ=255)
aaaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCTATCgaga > 2:2943059/1‑93 (MQ=255)
aaaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCgaga > 2:343510/1‑93 (MQ=255)
aaaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCgaga > 2:3650990/1‑93 (MQ=255)
aaaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCgaga > 1:3473349/1‑93 (MQ=255)
aatctccccTCTTGCCCCCGCTATTGGCTATCCCGATATGGTTTCTCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGAc < 2:23356/90‑1 (MQ=255)
aaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGAc > 1:240411/1‑93 (MQ=255)
aaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGAc > 1:1198017/1‑93 (MQ=255)
aaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACg > 1:1063149/1‑93 (MQ=255)
aCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGa > 1:3196079/1‑93 (MQ=255)
tcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCCCCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATa < 1:1220529/93‑1 (MQ=255)
tcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATa > 2:1002029/1‑93 (MQ=255)
ccctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATa < 2:3176393/92‑1 (MQ=255)
ctctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGc < 2:1195462/93‑1 (MQ=255)
tctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGcc > 2:4279878/1‑93 (MQ=255)
tctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGcc > 2:3071775/1‑93 (MQ=255)
tctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGcc > 2:1341913/1‑93 (MQ=255)
tctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGGTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGcc > 1:3295680/1‑93 (MQ=255)
ctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCa > 2:4410507/1‑93 (MQ=255)
ctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCa > 2:21662/1‑93 (MQ=255)
ctctTCCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGCCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCa < 2:1633745/93‑1 (MQ=255)
tctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCAt > 2:4657852/1‑93 (MQ=255)
ctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATg > 2:3458452/1‑93 (MQ=255)
ttGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAGGCCATCGAGCCGATAGCCATgc > 1:3902873/1‑92 (MQ=255)
ttGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGa > 1:1137887/1‑93 (MQ=255)
tGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGAc < 2:901015/93‑1 (MQ=255)
gccgccGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGAcc > 1:2896793/1‑93 (MQ=255)
ccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGt > 2:1447738/1‑93 (MQ=255)
cgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTc > 1:479309/1‑93 (MQ=255)
gcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCg > 2:2735283/1‑93 (MQ=255)
gcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCg > 2:2721927/1‑93 (MQ=255)
tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGt > 1:3527003/1‑93 (MQ=255)
aTTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCggcc < 2:4615754/93‑3 (MQ=255)
aTTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTc > 2:858314/1‑93 (MQ=255)
ttGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCt > 2:1332677/1‑93 (MQ=255)
gCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATc < 1:920101/93‑1 (MQ=255)
cTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAAGCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCt < 1:454840/93‑1 (MQ=255)
tATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTg > 1:309904/1‑93 (MQ=255)
tATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGACATCGAGACGATAGCCATGACCATGTCGGTCTATCTg > 1:1442569/1‑93 (MQ=255)
accccGATATGGTTTCGCTGTTTGCCGGCACCGTGCAGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGa < 2:3972816/91‑1 (MQ=255)
aTCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGa > 2:3949338/1‑93 (MQ=255)
aTCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGa < 1:2280270/93‑1 (MQ=255)
aTCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGa > 2:571610/1‑93 (MQ=255)
tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt > 1:4112316/1‑93 (MQ=255)
tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt > 1:4365857/1‑93 (MQ=255)
tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt > 2:3298701/1‑93 (MQ=255)
tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt > 1:1891634/1‑93 (MQ=255)
tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt > 1:4530194/1‑93 (MQ=255)
cccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAtt > 2:62234/1‑93 (MQ=255)
ccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTa > 1:3499414/1‑93 (MQ=255)
atatGTTTGCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa < 1:3167472/93‑1 (MQ=255)
atatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa < 1:2608796/93‑1 (MQ=255)
atatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa > 1:783530/1‑93 (MQ=255)
atatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa > 1:3342828/1‑93 (MQ=255)
tatGGTTTAGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAg > 2:4573345/1‑93 (MQ=255)
atGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGc > 1:2331057/1‑93 (MQ=255)
tGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGcc > 2:3714865/1‑93 (MQ=255)
tGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGcc < 1:2810921/93‑1 (MQ=255)
gTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTg > 1:583410/1‑93 (MQ=255)
tttCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGa < 2:2530288/93‑1 (MQ=255)
tCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACt < 2:1581289/93‑1 (MQ=255)
cGCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTa < 1:1788033/93‑1 (MQ=255)
gCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCTAGCCATCGAGACGATAGTCATGACCAAGTCGGTCTATCTGATTATCAGCCTGACTAt > 2:1100340/1‑93 (MQ=255)
gCTGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAt > 2:3954511/1‑93 (MQ=255)
gCTGTTCGCCGTCACCGTGCGTAATCAGCC‑GGTTCAAGCCATCGATACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTCACTAt < 2:790459/93‑1 (MQ=255)
tGTTTGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtct < 2:3773455/93‑1 (MQ=255)
tGTTTGCCGGAACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtct < 1:1958590/93‑1 (MQ=255)
tGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgct < 2:1987626/93‑1 (MQ=255)
tGCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgct > 1:4619524/1‑93 (MQ=255)
gCCGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctg < 2:1356803/93‑1 (MQ=255)
ccGGCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctgc < 1:3613380/93‑1 (MQ=255)
ggCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGctgctg > 1:3554418/1‑93 (MQ=255)
gCACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtga > 1:672902/1‑93 (MQ=255)
cACCGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgat < 1:3953769/93‑1 (MQ=255)
ccGTGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgatga < 1:3180479/93‑1 (MQ=255)
tGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAata < 2:1655266/93‑1 (MQ=255)
tGCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAata < 2:819785/93‑1 (MQ=255)
gCTGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAatat < 2:2645971/93‑1 (MQ=255)
tGAATCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCt > 1:125013/1‑93 (MQ=255)
aaTCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCtat < 1:3127584/93‑1 (MQ=255)
aTCAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCtata > 1:3395647/1‑93 (MQ=255)
cAGACGGG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAc < 1:3753885/93‑1 (MQ=255)
|
GTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GG‑GCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAC > NC_000913/3418745‑3418924
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCATC > NC_000913/3418747‑3418933
|
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGG > SRR4302535.1045276/1‑94 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGG < SRR4302535.938861/94‑1 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGG < SRR4302535.937371/94‑1 (MQ=60)
CTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGGATCAGAC‑GGGgc > SRR4302535.3339421/1‑92 (MQ=60)
CTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGGgc > SRR4302535.1048995/1‑92 (MQ=60)
CTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGGgc > SRR4302535.3372521/1‑92 (MQ=60)
CTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGACGGCACCGTGCTGAATCAGAC‑GGGgc > SRR4302535.3530811/1‑92 (MQ=60)
TCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGGgca > SRR4302535.2368520/1‑91 (MQ=60)
AACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAG > SRR4302535.110125/1‑94 (MQ=60)
AACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAG > SRR4302535.2107649/1‑94 (MQ=60)
AACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAG > SRR4302535.21955/1‑94 (MQ=60)
AACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAG > SRR4302535.4071994/1‑94 (MQ=60)
ATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCA > SRR4302535.3070623/1‑94 (MQ=60)
ATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCA > SRR4302535.1427025/1‑94 (MQ=60)
ATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCA > SRR4302535.5947/1‑94 (MQ=60)
TCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCAT < SRR4302535.696980/94‑1 (MQ=60)
CGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATC > SRR4302535.4514976/1‑94 (MQ=60)
CGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATC < SRR4302535.2125891/94‑1 (MQ=60)
GTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCG > SRR4302535.2285/1‑94 (MQ=60)
TCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGA > SRR4302535.2190036/1‑94 (MQ=60)
CAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAG > SRR4302535.4047538/1‑94 (MQ=60)
CAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAG < SRR4302535.2174315/94‑1 (MQ=60)
CAAAAACTCCTCTCTGGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAG < SRR4302535.4678439/94‑1 (MQ=60)
AAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGA > SRR4302535.3497483/1‑94 (MQ=60)
AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGAC > SRR4302535.242059/1‑94 (MQ=60)
AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGAC > SRR4302535.1206597/1‑94 (MQ=60)
aacccCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACG < SRR4302535.23623/89‑1 (MQ=60)
AAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACG > SRR4302535.1070716/1‑94 (MQ=60)
AACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGA > SRR4302535.3218196/1‑94 (MQ=60)
CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATA > SRR4302535.3775317/1‑94 (MQ=60)
CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATA < SRR4302535.4563910/94‑1 (MQ=60)
TCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCCCCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAG < SRR4302535.1229277/94‑1 (MQ=60)
CCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAG < SRR4302535.1972322/94‑1 (MQ=60)
CTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGAC > SRR4302535.972402/1‑94 (MQ=60)
CTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGGTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCC > SRR4302535.3318594/1‑94 (MQ=60)
TCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCA < SRR4302535.3555752/94‑1 (MQ=60)
CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCAT > SRR4302535.3210357/1‑94 (MQ=60)
CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCAGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCAG > SRR4302535.1198656/1‑94 (MQ=60)
CTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAGGCCATCGAGCCGATAGCCATGC > SRR4302535.3929610/1‑94 (MQ=60)
CTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGA > SRR4302535.1146002/1‑94 (MQ=60)
CTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGA > SRR4302535.2214704/1‑94 (MQ=60)
TGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACC > SRR4302535.2917278/1‑94 (MQ=60)
GCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGT > SRR4302535.350695/1‑94 (MQ=60)
GCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGT < SRR4302535.3127611/94‑1 (MQ=60)
CCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTC > SRR4302535.482672/1‑94 (MQ=60)
GCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGG > SRR4302535.3964938/1‑94 (MQ=60)
GCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGG > SRR4302535.3612255/1‑94 (MQ=60)
CTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGT > SRR4302535.3551495/1‑94 (MQ=60)
TATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTC > SRR4302535.1851914/1‑94 (MQ=60)
GGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATC < SRR4302535.4595561/94‑1 (MQ=60)
GCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCT < SRR4302535.926628/94‑1 (MQ=60)
CTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTG > SRR4302535.312053/1‑94 (MQ=60)
CTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTG < SRR4302535.3725286/94‑1 (MQ=60)
CTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGACATCGAGACGATAGCCATGACCATGTCGGTCTATCTG > SRR4302535.1452890/1‑94 (MQ=60)
CTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAAGCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTG < SRR4302535.458025/94‑1 (MQ=60)
ATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAT < SRR4302535.2296558/94‑1 (MQ=60)
ATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAT > SRR4302535.1905256/1‑94 (MQ=60)
ATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAT > SRR4302535.4561207/1‑94 (MQ=60)
ATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAT > SRR4302535.4395730/1‑94 (MQ=60)
ATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAT > SRR4302535.4140463/1‑94 (MQ=60)
CCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTA > SRR4302535.3523743/1‑94 (MQ=60)
CGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATC > SRR4302535.2580581/1‑94 (MQ=60)
GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA > SRR4302535.3366120/1‑94 (MQ=60)
GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA > SRR4302535.789026/1‑94 (MQ=60)
GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA > SRR4302535.850556/1‑94 (MQ=60)
GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA < SRR4302535.257967/94‑1 (MQ=60)
atatgttttcgcgtgttgcgggccccgtgccgaagcagacgGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAG < SRR4302535.1236335/53‑1 (MQ=60)
ATATGTTTGCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAG < SRR4302535.3189417/94‑1 (MQ=60)
ATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAG < SRR4302535.2627517/94‑1 (MQ=60)
TATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGC > SRR4302535.2347730/1‑94 (MQ=60)
ATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCC > SRR4302535.3192518/1‑94 (MQ=60)
TGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCT < SRR4302535.2830904/94‑1 (MQ=60)
GGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTG > SRR4302535.587502/1‑94 (MQ=60)
TTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGAC < SRR4302535.2072776/94‑1 (MQ=60)
TTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACT < SRR4302535.820696/94‑1 (MQ=60)
TTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACT < SRR4302535.4196386/94‑1 (MQ=60)
CGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAT < SRR4302535.1213217/94‑1 (MQ=60)
CGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAT > SRR4302535.1127302/1‑94 (MQ=60)
CGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAT < SRR4302535.1800969/94‑1 (MQ=60)
CGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAT > SRR4302535.3461338/1‑94 (MQ=60)
GCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATC > SRR4302535.1281682/1‑94 (MQ=60)
TGTTTGCCGGAACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTC < SRR4302535.1972689/94‑1 (MQ=60)
TTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCT > SRR4302535.1479663/1‑94 (MQ=60)
TTGCCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCT > SRR4302535.4650913/1‑94 (MQ=60)
CCGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCT < SRR4302535.3638433/94‑1 (MQ=60)
CCGCCTCCGTGCTCAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATCACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCT < SRR4302535.1479783/94‑1 (MQ=60)
CGGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTG > SRR4302535.3579076/1‑94 (MQ=60)
GGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGA > SRR4302535.3241151/1‑94 (MQ=60)
GGCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGA > SRR4302535.677598/1‑94 (MQ=60)
GCACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGAT < SRR4302535.2303318/94‑1 (MQ=60)
CACCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATG < SRR4302535.3980760/94‑1 (MQ=60)
ACCGTGCTGAATCAGACGGGG‑CGAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGA > SRR4302535.4679561/1‑94 (MQ=60)
ACCGTGCTGAATCAGACGGGG‑CAAGACATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGA > SRR4302535.2290268/1‑94 (MQ=60)
CCGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAA < SRR4302535.3202465/94‑1 (MQ=60)
CGTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAAT > SRR4302535.652262/1‑94 (MQ=60)
GTGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATA > SRR4302535.3191928/1‑94 (MQ=60)
TGCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATAT > SRR4302535.50613/1‑94 (MQ=60)
GCTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATC < SRR4302535.2165909/94‑1 (MQ=60)
CTGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCT > SRR4302535.125893/1‑94 (MQ=60)
TGAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTA > SRR4302535.28085/1‑94 (MQ=60)
GAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTAT < SRR4302535.3432680/94‑1 (MQ=60)
GAATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTAT < SRR4302535.4429597/94‑1 (MQ=60)
AATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATA > SRR4302535.3419271/1‑94 (MQ=60)
AATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATA < SRR4302535.3149366/94‑1 (MQ=60)
ATCAGCC‑GGGCCAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA < SRR4302535.2859846/94‑1 (MQ=60)
ATCAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA > SRR4302535.4660169/1‑94 (MQ=60)
CAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACC < SRR4302535.3779858/94‑1 (MQ=60)
CAGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACC < SRR4302535.3163763/94‑1 (MQ=60)
AGACGGGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCG > SRR4302535.778677/1‑94 (MQ=60)
GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCA < SRR4302535.1597476/94‑1 (MQ=60)
G‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCATC < SRR4302535.2713610/94‑1 (MQ=60)
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ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGG‑CAAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCATC > NC_000913/3418747‑3418933
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
