Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,454,538	T→C	N175N (AAT→AAC)	b3325 →	YheF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,454,538	0	T	C	100.0%	719.0 / NA	221	N175N (AAT→AAC)	b3325	YheF
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (86/135); total (86/135)

Only 100 of 233 total aligned reads displayed.

CCAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAATAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCT  >  NC_000913/3454448‑3454627

ccAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATtaacaa                                                                                         <  2:3182764/93‑1 (MQ=255)

 cAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACaaa                                                                                        <  2:1079642/93‑1 (MQ=255)

 cAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACaaa                                                                                        <  1:1943727/93‑1 (MQ=255)

 cAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACaaa                                                                                        <  2:1505211/93‑1 (MQ=255)

   gatgatGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACt                                                                                      >  1:504318/1‑93 (MQ=255)

   gatgatGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACt                                                                                      >  1:3260282/1‑93 (MQ=255)

   gatgatGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACt                                                                                      >  2:4504768/1‑93 (MQ=255)

   gatgatGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACt                                                                                      <  2:1948338/93‑1 (MQ=255)

    atgatgGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTg                                                                                     >  1:4380575/1‑93 (MQ=255)

     tgatgGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGa                                                                                    <  2:588530/93‑1 (MQ=255)

     tgatgGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGa                                                                                    <  1:1431835/93‑1 (MQ=255)

     tgatgGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGa                                                                                    >  1:24246/1‑93 (MQ=255)

     tgatgGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGa                                                                                    >  2:2965922/1‑93 (MQ=255)

      gatggatgCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGAt                                                                                   >  2:4257376/1‑93 (MQ=255)

         ggatgCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGa                                                                                <  1:4550891/93‑1 (MQ=255)

          gatgCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGaa                                                                               >  2:2480994/1‑93 (MQ=255)

          gatgCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGaa                                                                               <  2:2889444/93‑1 (MQ=255)

          gatgCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGaa                                                                               <  2:730838/93‑1 (MQ=255)

           atgCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAg                                                                              <  2:907799/93‑1 (MQ=255)

            tgCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGt                                                                             >  2:2558578/1‑93 (MQ=255)

            tgCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGt                                                                             <  2:40632/93‑1 (MQ=255)

             gCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTc                                                                            <  2:42934/93‑1 (MQ=255)

                  tAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATaaa                                                                       <  1:1108952/93‑1 (MQ=255)

                  tAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATaaa                                                                       <  2:832217/93‑1 (MQ=255)

                  tAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATaaa                                                                       <  2:4555022/93‑1 (MQ=255)

                    gCGTCGTTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCTTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAgc                                                                     <  2:2301769/93‑1 (MQ=255)

                    gCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAgc                                                                     <  2:2387289/93‑1 (MQ=255)

                    gCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAgc                                                                     <  1:3799965/93‑1 (MQ=255)

                    gCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAgc                                                                     <  2:435408/93‑1 (MQ=255)

                        cGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGt                                                                 <  2:2984718/93‑1 (MQ=255)

                         ggTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGtt                                                                >  2:3540524/1‑93 (MQ=255)

                         ggTAATGTTGTGCAGTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGtt                                                                <  1:3376041/93‑1 (MQ=255)

                          gTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTg                                                               >  1:1530517/1‑93 (MQ=255)

                           tAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGa                                                              <  1:822570/93‑1 (MQ=255)

                           tAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGa                                                              >  1:977385/1‑93 (MQ=255)

                           tAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGa                                                              <  1:1166728/93‑1 (MQ=255)

                           tAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGa                                                              <  2:1664303/93‑1 (MQ=255)

                           tAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGa                                                              >  1:1778147/1‑93 (MQ=255)

                            aaTGTTGTGCATTATGACCCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGAt                                                             <  1:4350875/93‑1 (MQ=255)

                            aaTGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGAt                                                             >  2:555772/1‑93 (MQ=255)

                             aTGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATg                                                            <  2:2827182/93‑1 (MQ=255)

                             aTGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATg                                                            >  2:3598016/1‑93 (MQ=255)

                               gttgtGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTc                                                          <  2:2339846/93‑1 (MQ=255)

                                 tgtgCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCAt                                                        <  2:1616851/93‑1 (MQ=255)

                                  gtgCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATatcatc                                                       <  2:1179371/93‑1 (MQ=255)

                                      aTTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGca                                                   >  2:1850907/1‑93 (MQ=255)

                                      aTTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGca                                                   <  2:339040/93‑1 (MQ=255)

                                      aTTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGca                                                   >  2:3868743/1‑93 (MQ=255)

                                       ttATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGcac                                                  >  1:3848585/1‑93 (MQ=255)

                                        tATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGcaca                                                 <  1:414581/93‑1 (MQ=255)

                                          tGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACaga                                               <  1:22562/93‑1 (MQ=255)

                                            aaCCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAgaga                                             >  1:1120841/1‑93 (MQ=255)

                                            aaCCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAgaga                                             <  1:3444026/93‑1 (MQ=255)

                                            aaCCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAgaga                                             <  1:4072449/93‑1 (MQ=255)

                                             aCCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGaa                                            <  1:3940483/93‑1 (MQ=255)

                                                cTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAagca                                         <  1:2918610/93‑1 (MQ=255)

                                                 tCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAagcag                                        <  2:1038662/93‑1 (MQ=255)

                                                 tCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAagcag                                        >  1:4051899/1‑93 (MQ=255)

                                                  ccAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAagcagc                                       >  1:2537148/1‑93 (MQ=255)

                                                   cAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAgcagca                                      >  1:3411233/1‑93 (MQ=255)

                                                    aaCGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCaa                                     >  1:744628/1‑93 (MQ=255)

                                                     aCGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCaaa                                    <  1:2161199/93‑1 (MQ=255)

                                                     aCGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCaaa                                    >  1:3287020/1‑93 (MQ=255)

                                                     aCGTTCTTATTCTGAAGTGTCGTGCCTCCACCATTAACAAACTGATGGAAGTCAGAAAGCTCGTTGATGTCATCGGCACAGAGGAGCAGCaaa                                    <  2:4480658/93‑1 (MQ=255)

                                                      cGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATGGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAat                                   <  1:2863758/93‑1 (MQ=255)

                                                       gTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAatt                                  <  1:2622477/93‑1 (MQ=255)

                                                       gTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAatt                                  <  2:813749/93‑1 (MQ=255)

                                                        ttCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAatta                                 >  1:597955/1‑93 (MQ=255)

                                                        ttCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAatta                                 >  1:3926180/1‑93 (MQ=255)

                                                        ttCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAatta                                 <  1:1401849/93‑1 (MQ=255)

                                                        ttCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAatta                                 <  2:2679129/93‑1 (MQ=255)

                                                        ttCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCAGCACAGAGAAGCAGCAAatta                                 >  2:3370948/1‑93 (MQ=255)

                                                         tCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAattat                                <  2:3503786/93‑1 (MQ=255)

                                                          cTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAattatt                               <  1:2341957/93‑1 (MQ=255)

                                                           ttATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTc                              >  1:3656820/1‑93 (MQ=255)

                                                             aTTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCAt                            >  2:2723337/1‑93 (MQ=255)

                                                              ttCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATc                           <  1:137180/93‑1 (MQ=255)

                                                               tCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCt                          <  1:2586291/93‑1 (MQ=255)

                                                                 tGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTgg                        <  1:1149138/93‑1 (MQ=255)

                                                                   aCCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGaa                      <  1:2121968/93‑1 (MQ=255)

                                                                   aCCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGaa                      <  2:4414371/93‑1 (MQ=255)

                                                                      ggTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAatat                   >  2:211719/1‑93 (MQ=255)

                                                                      ggTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAatat                   <  1:2084082/93‑1 (MQ=255)

                                                                       gTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATg                  <  1:3969168/93‑1 (MQ=255)

                                                                        tCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGc                 <  1:552612/93‑1 (MQ=255)

                                                                          gTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGt               <  2:204862/93‑1 (MQ=255)

                                                                          gTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGt               <  1:1596568/93‑1 (MQ=255)

                                                                             ccTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAg            >  1:4318773/1‑93 (MQ=255)

                                                                              cTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTGTTCATCTGGAATATGCGTCAGc           >  1:1838392/1‑93 (MQ=255)

                                                                              cTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGc           <  1:3108920/93‑1 (MQ=255)

                                                                              cTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGc           <  1:3204916/93‑1 (MQ=255)

                                                                              cTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGc           <  1:783260/93‑1 (MQ=255)

                                                                               tCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCg          >  2:3707121/1‑93 (MQ=255)

                                                                                 caccaTTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGa        <  2:3059233/93‑1 (MQ=255)

                                                                                  accaTTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGaa       <  1:1585655/93‑1 (MQ=255)

                                                                                  accaTTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGaa       >  1:4589877/1‑93 (MQ=255)

                                                                                       taacaaGCTGATTGAAGTCATAAAGCGCGTTGCTGTCGTCGACACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGACGAtct  <  2:4688066/93‑1 (MQ=255)

                                                                                       taacaaACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGAtct  <  2:632842/93‑1 (MQ=255)

                                                                                       taacaaACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGAtct  <  1:4620689/93‑1 (MQ=255)

                                                                                       taacaaACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGAtct  <  2:1236044/93‑1 (MQ=255)

CCAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAATAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCT  >  NC_000913/3454448‑3454627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCGCCAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAATAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCTCGCC  >  NC_000913/3454445‑3454631

CCGCCAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAAC                                                                                               <  SRR4302535.3789444/94‑1 (MQ=60)

  GCCAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAA                                                                                             >  SRR4302535.2327527/1‑94 (MQ=60)

    CAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAAC                                                                                           <  SRR4302535.1957724/94‑1 (MQ=60)

    CAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAAC                                                                                           >  SRR4302535.676321/1‑94 (MQ=60)

     AGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACT                                                                                          >  SRR4302535.3282937/1‑94 (MQ=60)

     AGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACT                                                                                          >  SRR4302535.507843/1‑94 (MQ=60)

     AGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACT                                                                                          >  SRR4302535.533584/1‑94 (MQ=60)

      GATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTG                                                                                         <  SRR4302535.1563174/94‑1 (MQ=60)

      GATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTG                                                                                         >  SRR4302535.4410546/1‑94 (MQ=60)

       ATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGA                                                                                        >  SRR4302535.24434/1‑94 (MQ=60)

        TGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGAT                                                                                       <  SRR4302535.1442056/94‑1 (MQ=60)

          ATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTG                                                                                     <  SRR4302535.1398391/94‑1 (MQ=60)

          ATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTG                                                                                     <  SRR4302535.4029825/94‑1 (MQ=60)

          ATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTG                                                                                     <  SRR4302535.1166320/94‑1 (MQ=60)

          ATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTG                                                                                     >  SRR4302535.4132388/1‑94 (MQ=60)

            GGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAA                                                                                   <  SRR4302535.4581996/94‑1 (MQ=60)

            GGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAA                                                                                   <  SRR4302535.2243209/94‑1 (MQ=60)

             GATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAG                                                                                  <  SRR4302535.4265171/94‑1 (MQ=60)

              ATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGT                                                                                 >  SRR4302535.2661499/1‑94 (MQ=60)

              ATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGT                                                                                 <  SRR4302535.3201130/94‑1 (MQ=60)

                   GGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAA                                                                            >  SRR4302535.2392959/1‑94 (MQ=60)

                   GGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAA                                                                            >  SRR4302535.1949372/1‑94 (MQ=60)

                     TAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAG                                                                          <  SRR4302535.1116872/94‑1 (MQ=60)

                     TAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAG                                                                          <  SRR4302535.3957131/94‑1 (MQ=60)

                      AGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGC                                                                         >  SRR4302535.91096/1‑94 (MQ=60)

                       GCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCG                                                                        <  SRR4302535.3826159/94‑1 (MQ=60)

                       GCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCG                                                                        <  SRR4302535.3440632/94‑1 (MQ=60)

                         GTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCG                                                                      <  SRR4302535.2233321/94‑1 (MQ=60)

                         GTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCG                                                                      <  SRR4302535.216842/94‑1 (MQ=60)

                           CGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTT                                                                    >  SRR4302535.4345390/1‑94 (MQ=60)

                            GGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTG                                                                   >  SRR4302535.1541542/1‑94 (MQ=60)

                            GGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTG                                                                   <  SRR4302535.261572/94‑1 (MQ=60)

                            GGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTG                                                                   <  SRR4302535.3070365/94‑1 (MQ=60)

                            GGTAATGTTGTGCAGTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTG                                                                   <  SRR4302535.3399519/94‑1 (MQ=60)

                             GTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGA                                                                  >  SRR4302535.984328/1‑94 (MQ=60)

                             GTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGA                                                                  >  SRR4302535.1440790/1‑94 (MQ=60)

                             GTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGA                                                                  >  SRR4302535.1791024/1‑94 (MQ=60)

                              TAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGAT                                                                 <  SRR4302535.828335/94‑1 (MQ=60)

                              TAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGAT                                                                 <  SRR4302535.1175059/94‑1 (MQ=60)

                              TAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGAT                                                                 <  SRR4302535.3316344/94‑1 (MQ=60)

                               AATGTTGTGCATTATGACCCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATG                                                                <  SRR4302535.4380644/94‑1 (MQ=60)

                               AATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATG                                                                <  SRR4302535.4464818/94‑1 (MQ=60)

                                 TGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTC                                                              <  SRR4302535.1485175/94‑1 (MQ=60)

                                  GTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCA                                                             <  SRR4302535.3239729/94‑1 (MQ=60)

                                    TGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATC                                                           >  SRR4302535.754481/1‑94 (MQ=60)

                                    TGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATAAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATC                                                           <  SRR4302535.2936120/94‑1 (MQ=60)

                                        CATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCA                                                       >  SRR4302535.3178245/1‑94 (MQ=60)

                                         ATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCAC                                                      >  SRR4302535.2075460/1‑94 (MQ=60)

                                         ATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCAC                                                      <  SRR4302535.160281/94‑1 (MQ=60)

                                         ATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCAC                                                      >  SRR4302535.3875074/1‑94 (MQ=60)

                                           TATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAG                                                    <  SRR4302535.3831677/94‑1 (MQ=60)

                                           TATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAG                                                    <  SRR4302535.417492/94‑1 (MQ=60)

                                           TATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAG                                                    <  SRR4302535.3570508/94‑1 (MQ=60)

                                             TGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAG                                                  <  SRR4302535.22732/94‑1 (MQ=60)

                                             TGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAG                                                  <  SRR4302535.2460361/94‑1 (MQ=60)

                                              GAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGA                                                 >  SRR4302535.1128833/1‑94 (MQ=60)

                                               AACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAA                                                <  SRR4302535.3467975/94‑1 (MQ=60)

                                               AACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAA                                                <  SRR4302535.4100318/94‑1 (MQ=60)

                                                ACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAGGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAG                                               <  SRR4302535.3291583/94‑1 (MQ=60)

                                                ACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAG                                               <  SRR4302535.3967383/94‑1 (MQ=60)

                                                ACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAG                                               >  SRR4302535.3983891/1‑94 (MQ=60)

                                                 CCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGC                                              >  SRR4302535.3819764/1‑94 (MQ=60)

                                                  CCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCA                                             <  SRR4302535.647626/94‑1 (MQ=60)

                                                   CTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAG                                            >  SRR4302535.1125505/1‑94 (MQ=60)

                                                   CTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAG                                            <  SRR4302535.4682046/94‑1 (MQ=60)

                                                   CTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAG                                            >  SRR4302535.4079638/1‑94 (MQ=60)

                                                   CTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAG                                            <  SRR4302535.2939207/94‑1 (MQ=60)

                                                    TCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGC                                           >  SRR4302535.2555425/1‑94 (MQ=60)

                                                     CCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCA                                          <  SRR4302535.461450/94‑1 (MQ=60)

                                                     CCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCA                                          >  SRR4302535.3434964/1‑94 (MQ=60)

                                                      CAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAA                                         >  SRR4302535.749856/1‑94 (MQ=60)

                                                       AACGTTCTTATTCTGACCGGTCGTGCCTCCTCCATTAACAAACTGATGGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAA                                        <  SRR4302535.4054079/94‑1 (MQ=60)

                                                       AACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAA                                        >  SRR4302535.3309871/1‑94 (MQ=60)

                                                       AACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTAATCGGCACAGAGAAGCAGCAAA                                        >  SRR4302535.3948741/1‑94 (MQ=60)

                                                        ACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAAT                                       <  SRR4302535.2176713/94‑1 (MQ=60)

                                                        ACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAAT                                       <  SRR4302535.353896/94‑1 (MQ=60)

                                                         CGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATT                                      >  SRR4302535.4635610/1‑94 (MQ=60)

                                                         CGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATGGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATT                                      <  SRR4302535.2884049/94‑1 (MQ=60)

                                                          GTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTA                                     >  SRR4302535.602141/1‑94 (MQ=60)

                                                          GTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTA                                     >  SRR4302535.3953004/1‑94 (MQ=60)

                                                          GTTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTA                                     <  SRR4302535.2641274/94‑1 (MQ=60)

                                                           TTCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTAT                                    <  SRR4302535.1411854/94‑1 (MQ=60)

                                                            TCTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATT                                   <  SRR4302535.209870/94‑1 (MQ=60)

                                                             CTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTC                                  >  SRR4302535.1670219/1‑94 (MQ=60)

                                                             CTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTC                                  >  SRR4302535.790240/1‑94 (MQ=60)

                                                             CTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTC                                  >  SRR4302535.3682131/1‑94 (MQ=60)

                                                             CTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTC                                  <  SRR4302535.1817766/94‑1 (MQ=60)

                                                             CTTATTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTC                                  <  SRR4302535.2358714/94‑1 (MQ=60)

                                                                 TTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCT                              <  SRR4302535.138143/94‑1 (MQ=60)

                                                                 TTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCT                              <  SRR4302535.4088858/94‑1 (MQ=60)

                                                                 TTCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCT                              <  SRR4302535.2063238/94‑1 (MQ=60)

                                                                  TCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTG                             <  SRR4302535.880184/94‑1 (MQ=60)

                                                                  TCTGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTG                             <  SRR4302535.2604866/94‑1 (MQ=60)

                                                                    TGACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGA                           <  SRR4302535.1157321/94‑1 (MQ=60)

                                                                      ACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAAT                         <  SRR4302535.2137268/94‑1 (MQ=60)

                                                                      ACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAAT                         >  SRR4302535.1211636/1‑94 (MQ=60)

                                                                      ACCGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATGATTCATCTGGAAT                         >  SRR4302535.1176300/1‑94 (MQ=60)

                                                                        CGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATAT                       <  SRR4302535.564323/94‑1 (MQ=60)

                                                                        CGGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATAT                       <  SRR4302535.4357044/94‑1 (MQ=60)

                                                                         GGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATG                      >  SRR4302535.1667096/1‑94 (MQ=60)

                                                                         GGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATG                      <  SRR4302535.2099090/94‑1 (MQ=60)

                                                                         GGTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATG                      >  SRR4302535.3909198/1‑94 (MQ=60)

                                                                          GTCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGC                     <  SRR4302535.3996276/94‑1 (MQ=60)

                                                                           TCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCG                    <  SRR4302535.556483/94‑1 (MQ=60)

                                                                           TCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCG                    <  SRR4302535.3434447/94‑1 (MQ=60)

                                                                           TCGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCG                    <  SRR4302535.2563899/94‑1 (MQ=60)

                                                                            CGTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGT                   >  SRR4302535.4385398/1‑94 (MQ=60)

                                                                             GTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTC                  <  SRR4302535.4543477/94‑1 (MQ=60)

                                                                             GTGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTC                  <  SRR4302535.1608084/94‑1 (MQ=60)

                                                                              TGCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCA                 <  SRR4302535.1154516/94‑1 (MQ=60)

                                                                               GCCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAG                >  SRR4302535.4348319/1‑94 (MQ=60)

                                                                                CCTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTGTTCATCTGGAATATGCGTCAGC               >  SRR4302535.1851653/1‑94 (MQ=60)

                                                                                 CTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCG              <  SRR4302535.3390305/94‑1 (MQ=60)

                                                                                 CTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCG              >  SRR4302535.1506067/1‑94 (MQ=60)

                                                                                 CTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCG              <  SRR4302535.3227112/94‑1 (MQ=60)

                                                                                 CTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCG              <  SRR4302535.3130565/94‑1 (MQ=60)

                                                                                 CTCCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCG              <  SRR4302535.788756/94‑1 (MQ=60)

                                                                                   CCACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGA            <  SRR4302535.2477554/94‑1 (MQ=60)

                                                                                    CACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAA           >  SRR4302535.4621121/1‑94 (MQ=60)

                                                                                     ACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAG          <  SRR4302535.1597096/94‑1 (MQ=60)

                                                                                     ACCATTAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAG          >  SRR4302535.4684819/1‑94 (MQ=60)

                                                                                          TAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCTC     >  SRR4302535.3854044/1‑94 (MQ=60)

                                                                                          TAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCTC     <  SRR4302535.2781156/94‑1 (MQ=60)

                                                                                          TAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCTC     >  SRR4302535.2057885/1‑94 (MQ=60)

                                                                                          TAACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCTC     <  SRR4302535.4652083/94‑1 (MQ=60)

                                                                                           AACAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCTCG    <  SRR4302535.711907/94‑1 (MQ=60)

                                                                                             CAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCTCGCC  >  SRR4302535.3447102/1‑94 (MQ=60)

CCGCCAGATGATGGATGCGGGTAGCGTCGGTAATGTTGTGCATTATGAACCCTCCAACGTTCTTATTCTGACCGGTCGTGCCTCCACCATTAATAAACTGATTGAAGTCATAAAGCGCGTTGATGTCATCGGCACAGAGAAGCAGCAAATTATTCATCTGGAATATGCGTCAGCGGAAGATCTCGCC  >  NC_000913/3454445‑3454631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`