Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,472,167 A→C V8G (GTA→GGA)  rpsL ← 30S ribosomal subunit protein S12

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,472,1670AC100.0% 722.3 / NA 230V8G (GTA→GGA) rpsL30S ribosomal subunit protein S12
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (102/128);  total (102/128)

Only 100 of 246 total aligned reads displayed.

TATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAG  >  NC_000913/3472077‑3472255
                                                                                          |                                                                                        
tataCACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTccc                                                                                        >  1:3463987/1‑93 (MQ=255)
  taCACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAg                                                                                      >  1:2309500/1‑93 (MQ=255)
   acacGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGc                                                                                     <  2:3062482/93‑1 (MQ=255)
   acacGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGc                                                                                     <  2:3960036/93‑1 (MQ=255)
    cacGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCt                                                                                    >  2:2877714/1‑93 (MQ=255)
    cacGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCt                                                                                    >  2:1766094/1‑93 (MQ=255)
    cacGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCt                                                                                    <  2:1345237/93‑1 (MQ=255)
      cGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTgg                                                                                  <  2:3710665/93‑1 (MQ=255)
       gAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGt                                                                                 <  2:2108199/93‑1 (MQ=255)
       gAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGt                                                                                 <  1:4323908/93‑1 (MQ=255)
          tACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTaa                                                                              >  2:3356603/1‑93 (MQ=255)
           aCATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAAc                                                                             <  2:4242182/93‑1 (MQ=255)
           aCATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAAc                                                                             <  1:1072024/93‑1 (MQ=255)
           aCATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAAc                                                                             <  1:714692/93‑1 (MQ=255)
            cATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACt                                                                            >  1:4404714/1‑93 (MQ=255)
            cATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACt                                                                            >  2:2307635/1‑93 (MQ=255)
             aTACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTg                                                                           <  2:2632061/93‑1 (MQ=255)
              tgcGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGt                                                                          <  1:3057347/91‑1 (MQ=255)
              tACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGt                                                                          >  2:1078804/1‑93 (MQ=255)
              tACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGt                                                                          >  2:20203/1‑93 (MQ=255)
               aCGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGtt                                                                         <  1:953827/93‑1 (MQ=255)
               aCGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGtt                                                                         <  2:2690260/93‑1 (MQ=255)
                cGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTg                                                                        <  2:86236/93‑1 (MQ=255)
                 gCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGc                                                                       >  1:1497766/1‑93 (MQ=255)
                 gCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGc                                                                       >  2:4324481/1‑93 (MQ=255)
                 gCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGc                                                                       <  1:2109964/93‑1 (MQ=255)
                    aCGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCAt                                                                    <  1:2290236/93‑1 (MQ=255)
                    aCGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCAt                                                                    <  2:136307/93‑1 (MQ=255)
                    aCGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGCGGCTTGCGTCCCAGCTGGTTAACTGTTGCCAt                                                                    >  1:589495/1‑93 (MQ=255)
                      gTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTa                                                                  <  1:549910/93‑1 (MQ=255)
                       tttttGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTaa                                                                 >  1:3129481/1‑93 (MQ=255)
                       tttttGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTAGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCCTTaa                                                                 >  2:1833031/1‑93 (MQ=255)
                        ttttGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTaaa                                                                <  2:1246877/93‑1 (MQ=255)
                        ttttGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTaaa                                                                <  1:4054904/93‑1 (MQ=255)
                         tttGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAAt                                                               <  1:3880199/93‑1 (MQ=255)
                          ttGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATa                                                              >  1:4633106/1‑93 (MQ=255)
                          ttGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATa                                                              <  2:4426281/93‑1 (MQ=255)
                          ttGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATa                                                              <  2:1997913/93‑1 (MQ=255)
                            gCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGc                                                            <  1:2428540/93‑1 (MQ=255)
                             cGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCt                                                           <  1:4156033/93‑1 (MQ=255)
                              gggCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTc                                                          <  2:223563/93‑1 (MQ=255)
                              gggCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTc                                                          >  1:2693914/1‑93 (MQ=255)
                              gggCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTc                                                          >  1:4000284/1‑93 (MQ=255)
                                gCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCt                                                        >  2:2978775/1‑93 (MQ=255)
                                gCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCt                                                        <  1:17741/93‑1 (MQ=255)
                                 cATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTg                                                       <  2:2423064/93‑1 (MQ=255)
                                 cATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTg                                                       <  2:1323548/93‑1 (MQ=255)
                                 cATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTg                                                       <  1:1899825/93‑1 (MQ=255)
                                   tGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGt                                                     >  2:1676985/1‑93 (MQ=255)
                                   tGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGATTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGt                                                     >  2:3446546/1‑93 (MQ=255)
                                    gCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGtt                                                    >  2:852688/1‑93 (MQ=255)
                                    gCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGtt                                                    <  1:2731895/93‑1 (MQ=255)
                                     cTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGttt                                                   >  1:3822058/1‑93 (MQ=255)
                                       tCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTa                                                 >  1:2812834/1‑93 (MQ=255)
                                        ccAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGCGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAg                                                <  2:2381680/93‑1 (MQ=255)
                                        ccAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTACGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAg                                                >  2:3779585/1‑93 (MQ=255)
                                         cAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGc                                               >  2:657824/1‑93 (MQ=255)
                                         cAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGc                                               <  1:3411178/93‑1 (MQ=255)
                                         cAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGc                                               >  2:1699565/1‑93 (MQ=255)
                                          aGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCt                                              >  1:1124953/1‑93 (MQ=255)
                                           gcgcAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCCGCTGGTTAACTGTTGCCATTAAATCACTCCTGGTTTTAGCtt                                             >  1:20239/1‑93 (MQ=255)
                                           gcgcAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCtt                                             <  1:1388564/93‑1 (MQ=255)
                                           gcgcAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCtt                                             >  2:2646455/1‑93 (MQ=255)
                                             gcAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCtttt                                           <  1:4191796/93‑1 (MQ=255)
                                                ggCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCt                                        >  2:1886203/1‑93 (MQ=255)
                                                 gCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCtt                                       <  2:2574108/93‑1 (MQ=255)
                                                  cACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTc                                      >  2:393224/1‑93 (MQ=255)
                                                   aagTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCGCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCg                                     <  1:4480906/91‑1 (MQ=255)
                                                      ttGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTaa                                  <  2:3177966/93‑1 (MQ=255)
                                                       tGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTaaa                                 <  1:3274190/93‑1 (MQ=255)
                                                         cTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAaca                               <  2:1105507/93‑1 (MQ=255)
                                                          ttttCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAacac                              <  1:3209636/93‑1 (MQ=255)
                                                          ttttCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAacac                              >  2:3535676/1‑93 (MQ=255)
                                                            ttCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGt                            >  1:893542/1‑93 (MQ=255)
                                                             tCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGta                           <  1:4348360/93‑1 (MQ=255)
                                                              cGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGtaa                          >  2:2928248/1‑93 (MQ=255)
                                                                  aCTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATaaa                      >  2:4290107/1‑93 (MQ=255)
                                                                  aCTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATaaa                      >  1:3433196/1‑93 (MQ=255)
                                                                  aCTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCACCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATaaa                      <  2:194209/93‑1 (MQ=255)
                                                                   cTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATaaaa                     <  1:3695429/93‑1 (MQ=255)
                                                                   cTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATaaaa                     <  2:530907/93‑1 (MQ=255)
                                                                    tttGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAAc                    <  2:4608805/93‑1 (MQ=255)
                                                                    tttGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAAc                    >  2:3630644/1‑93 (MQ=255)
                                                                    tttGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAAc                    >  1:1853201/1‑93 (MQ=255)
                                                                     ttGCGATCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACg                   <  2:1773992/93‑1 (MQ=255)
                                                                     ttGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACg                   >  1:4216365/1‑93 (MQ=255)
                                                                        cGAGCACGTGGTGTGCGTCCCAGCTGATTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTcc                <  1:2401757/93‑1 (MQ=255)
                                                                           gCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTca             <  1:616520/93‑1 (MQ=255)
                                                                           gCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTca             >  2:3468470/1‑93 (MQ=255)
                                                                              cGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTcacac          >  1:2923316/1‑93 (MQ=255)
                                                                                tGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACaa        >  1:4133397/1‑93 (MQ=255)
                                                                                  gTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAata      <  1:3690370/93‑1 (MQ=255)
                                                                                  gTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAata      <  2:718978/93‑1 (MQ=255)
                                                                                   tttGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAatat     <  2:577434/93‑1 (MQ=255)
                                                                                   tttGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAatat     >  1:1561259/1‑93 (MQ=255)
                                                                                    ttGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATg    <  1:4365212/93‑1 (MQ=255)
                                                                                     tGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGa   <  1:1223702/93‑1 (MQ=255)
                                                                                      gCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAg  <  1:2528659/93‑1 (MQ=255)
                                                                                      gCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAg  <  2:2784707/93‑1 (MQ=255)
                                                                                      gCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAg  <  2:3505861/93‑1 (MQ=255)
                                                                                          |                                                                                        
TATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAG  >  NC_000913/3472077‑3472255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACG  >  NC_000913/3472074‑3472259
                                                                                             |                                                                                            
GTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTC                                                                                              >  SRR4302535.4215538/1‑94 (MQ=60)
 TATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCC                                                                                             >  SRR4302535.267060/1‑94 (MQ=60)
 TATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCC                                                                                             >  SRR4302535.207582/1‑94 (MQ=60)
  ATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCC                                                                                            >  SRR4302535.2906838/1‑94 (MQ=60)
  ATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCC                                                                                            >  SRR4302535.446044/1‑94 (MQ=60)
  ATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCC                                                                                            >  SRR4302535.3488063/1‑94 (MQ=60)
  ATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCC                                                                                            >  SRR4302535.3997943/1‑94 (MQ=60)
  ATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCC                                                                                            >  SRR4302535.4364878/1‑94 (MQ=60)
   TATACACGAGTACATACGCCACGTTTTTGCTGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCA                                                                                           <  SRR4302535.4015754/94‑1 (MQ=60)
    ATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAG                                                                                          <  SRR4302535.1905105/94‑1 (MQ=60)
    ATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAG                                                                                          >  SRR4302535.2326030/1‑94 (MQ=60)
      ACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCT                                                                                        >  SRR4302535.2416004/1‑94 (MQ=60)
        ACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGG                                                                                      >  SRR4302535.4392484/1‑94 (MQ=60)
         CGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGT                                                                                     >  SRR4302535.2639980/1‑94 (MQ=60)
          GAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTT                                                                                    <  SRR4302535.4353485/94‑1 (MQ=60)
          GAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTT                                                                                    <  SRR4302535.2441435/94‑1 (MQ=60)
          GAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTT                                                                                    <  SRR4302535.3155097/94‑1 (MQ=60)
           AGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTA                                                                                   <  SRR4302535.1994890/94‑1 (MQ=60)
           AGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTA                                                                                   <  SRR4302535.3032844/94‑1 (MQ=60)
              ACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACT                                                                                <  SRR4302535.1079638/94‑1 (MQ=60)
              ACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACT                                                                                >  SRR4302535.3428503/1‑94 (MQ=60)
              ACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACT                                                                                >  SRR4302535.4434858/1‑94 (MQ=60)
              ACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACT                                                                                <  SRR4302535.719709/94‑1 (MQ=60)
                ATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGT                                                                              <  SRR4302535.1791563/94‑1 (MQ=60)
                ATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGT                                                                              >  SRR4302535.3253213/1‑94 (MQ=60)
                ATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGT                                                                              >  SRR4302535.2552577/1‑94 (MQ=60)
                 TGCGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTT                                                                             <  SRR4302535.3078739/94‑1 (MQ=60)
                 TACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTT                                                                             <  SRR4302535.1381613/94‑1 (MQ=60)
                  ACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTG                                                                            <  SRR4302535.960585/94‑1 (MQ=60)
                  ACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTG                                                                            <  SRR4302535.1318488/94‑1 (MQ=60)
                  ACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGAGGTTTGCGTCCCAGCTGGTTAACTGTTG                                                                            <  SRR4302535.2317624/94‑1 (MQ=60)
                   CGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGC                                                                           >  SRR4302535.1508534/1‑94 (MQ=60)
                    GCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCC                                                                          >  SRR4302535.3142058/1‑94 (MQ=60)
                    GCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCC                                                                          <  SRR4302535.2125184/94‑1 (MQ=60)
                    GCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCC                                                                          >  SRR4302535.1996780/1‑94 (MQ=60)
                     CCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCA                                                                         >  SRR4302535.685951/1‑94 (MQ=60)
                      CACGTTTTTGCGGGCATGCTTCCAGCGCATGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCAT                                                                        <  SRR4302535.2735053/94‑1 (MQ=60)
                      CACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGCGGCTTGCGTCCCAGCTGGTTAACTGTTGCCAT                                                                        >  SRR4302535.593626/1‑94 (MQ=60)
                       ACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATT                                                                       <  SRR4302535.2306624/94‑1 (MQ=60)
                         GTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTCA                                                                     >  SRR4302535.4269197/1‑94 (MQ=60)
                         GTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAA                                                                     >  SRR4302535.3151278/1‑94 (MQ=60)
                         GTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAA                                                                     >  SRR4302535.1570354/1‑94 (MQ=60)
                         GTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAA                                                                     <  SRR4302535.553755/94‑1 (MQ=60)
                           TTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAAT                                                                   <  SRR4302535.4082668/94‑1 (MQ=60)
                           TTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAAT                                                                   <  SRR4302535.3808841/94‑1 (MQ=60)
                            TTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATA                                                                  >  SRR4302535.4664538/1‑94 (MQ=60)
                            TTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATA                                                                  <  SRR4302535.3906833/94‑1 (MQ=60)
                             TTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAG                                                                 <  SRR4302535.3447270/94‑1 (MQ=60)
                               GCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCT                                                               <  SRR4302535.2446039/94‑1 (MQ=60)
                               GCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCT                                                               <  SRR4302535.3559904/94‑1 (MQ=60)
                                CGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTC                                                              >  SRR4302535.2713166/1‑94 (MQ=60)
                                CGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTC                                                              <  SRR4302535.4184484/94‑1 (MQ=60)
                                CGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTC                                                              >  SRR4302535.4027651/1‑94 (MQ=60)
                                   GCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTG                                                           <  SRR4302535.17874/94‑1 (MQ=60)
                                    CATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGG                                                          <  SRR4302535.1913497/94‑1 (MQ=60)
                                    CATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGG                                                          <  SRR4302535.149537/94‑1 (MQ=60)
                                     ATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGT                                                         >  SRR4302535.868458/1‑94 (MQ=60)
                                     ATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGT                                                         >  SRR4302535.3899192/1‑94 (MQ=60)
                                      TGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTT                                                        >  SRR4302535.4124012/1‑94 (MQ=60)
                                       GCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTT                                                       >  SRR4302535.3848425/1‑94 (MQ=60)
                                       GCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTT                                                       >  SRR4302535.628380/1‑94 (MQ=60)
                                       GCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTT                                                       <  SRR4302535.2751398/94‑1 (MQ=60)
                                         TTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTA                                                     >  SRR4302535.2832822/1‑94 (MQ=60)
                                         TTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTA                                                     <  SRR4302535.90403/94‑1 (MQ=60)
                                           CCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGC                                                   <  SRR4302535.2826312/94‑1 (MQ=60)
                                           CCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGC                                                   >  SRR4302535.3487521/1‑94 (MQ=60)
                                            CAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCT                                                  <  SRR4302535.3434909/94‑1 (MQ=60)
                                            CAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCT                                                  >  SRR4302535.1132980/1‑94 (MQ=60)
                                             AGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCCGCTGGTTAACTGTTGCCATTAAATCACTCCTGGTTTTAGCTT                                                 >  SRR4302535.20390/1‑94 (MQ=60)
                                              GCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTT                                                <  SRR4302535.3717608/94‑1 (MQ=60)
                                              GCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTT                                                >  SRR4302535.600386/1‑94 (MQ=60)
                                              GCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTT                                                <  SRR4302535.1398476/94‑1 (MQ=60)
                                                GCAGTCACGTTGCTTTTCGCAACTTTGCGAGCGCGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTG                                              <  SRR4302535.1544743/94‑1 (MQ=60)
                                                GCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTG                                              <  SRR4302535.1778960/94‑1 (MQ=60)
                                                GCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTG                                              >  SRR4302535.2128038/1‑94 (MQ=60)
                                                GCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTG                                              <  SRR4302535.4220481/94‑1 (MQ=60)
                                                 CAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGC                                             >  SRR4302535.4401901/1‑94 (MQ=60)
                                                 CAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGC                                             >  SRR4302535.3180412/1‑94 (MQ=60)
                                                  AGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCT                                            <  SRR4302535.3010879/94‑1 (MQ=60)
                                                  AGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCT                                            <  SRR4302535.4130285/94‑1 (MQ=60)
                                                  AGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCT                                            >  SRR4302535.583877/1‑94 (MQ=60)
                                                  AGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCT                                            <  SRR4302535.4180905/94‑1 (MQ=60)
                                                      AAGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCGCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGT                                        <  SRR4302535.4511663/94‑1 (MQ=60)
                                                        GTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAA                                      >  SRR4302535.2530544/1‑94 (MQ=60)
                                                          TGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAAC                                    <  SRR4302535.3296931/94‑1 (MQ=60)
                                                           GCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACA                                   >  SRR4302535.2802684/1‑94 (MQ=60)
                                                             TTTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACG                                 <  SRR4302535.3231868/94‑1 (MQ=60)
                                                              TTTCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGT                                >  SRR4302535.899873/1‑94 (MQ=60)
                                                                TCGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAA                              <  SRR4302535.4378110/94‑1 (MQ=60)
                                                                 CGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAAT                             >  SRR4302535.4617964/1‑94 (MQ=60)
                                                                 CGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAAT                             <  SRR4302535.4194874/94‑1 (MQ=60)
                                                                 CGCAACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAAT                             >  SRR4302535.4421724/1‑94 (MQ=60)
                                                                    AACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAA                          >  SRR4302535.3457051/1‑94 (MQ=60)
                                                                    AACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAA                          >  SRR4302535.3846305/1‑94 (MQ=60)
                                                                     ACTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAA                         >  SRR4302535.952736/1‑94 (MQ=60)
                                                                      CTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAAC                        <  SRR4302535.3721008/94‑1 (MQ=60)
                                                                      CTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAAC                        >  SRR4302535.4313940/1‑94 (MQ=60)
                                                                      CTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAAC                        <  SRR4302535.2435662/94‑1 (MQ=60)
                                                                      CTTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAAC                        >  SRR4302535.1866549/1‑94 (MQ=60)
                                                                       TTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACG                       >  SRR4302535.4245218/1‑94 (MQ=60)
                                                                       TTTGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACG                       <  SRR4302535.580291/94‑1 (MQ=60)
                                                                         TGCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTC                     <  SRR4302535.4058662/94‑1 (MQ=60)
                                                                          GCGAGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCC                    <  SRR4302535.3684854/94‑1 (MQ=60)
                                                                           CGAGCACGTGGTGTGCGTCCCAGCTGATTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCT                   <  SRR4302535.2419032/94‑1 (MQ=60)
                                                                             AGCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCA                 >  SRR4302535.4217819/1‑94 (MQ=60)
                                                                              GCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCAC                <  SRR4302535.1092394/94‑1 (MQ=60)
                                                                              GCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCAC                <  SRR4302535.620807/94‑1 (MQ=60)
                                                                              GCACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCAC                <  SRR4302535.2202300/94‑1 (MQ=60)
                                                                                ACGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACAC              >  SRR4302535.2943930/1‑94 (MQ=60)
                                                                                 CGTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACA             <  SRR4302535.3409813/94‑1 (MQ=60)
                                                                                  GTGGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAA            >  SRR4302535.4161691/1‑94 (MQ=60)
                                                                                    GGTTTGCGTCGCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATA          <  SRR4302535.178905/94‑1 (MQ=60)
                                                                                    GGTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATA          >  SRR4302535.4666591/1‑94 (MQ=60)
                                                                                     GTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATAT         <  SRR4302535.4232031/94‑1 (MQ=60)
                                                                                     GTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATAT         >  SRR4302535.1572509/1‑94 (MQ=60)
                                                                                     GTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATAT         <  SRR4302535.1181610/94‑1 (MQ=60)
                                                                                     GTTTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATAT         <  SRR4302535.3715912/94‑1 (MQ=60)
                                                                                       TTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGA       <  SRR4302535.209983/94‑1 (MQ=60)
                                                                                       TTGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGA       <  SRR4302535.4395083/94‑1 (MQ=60)
                                                                                        TGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAG      <  SRR4302535.1232458/94‑1 (MQ=60)
                                                                                        TGCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAG      >  SRR4302535.4515571/1‑94 (MQ=60)
                                                                                         GCGTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGG     <  SRR4302535.2546877/94‑1 (MQ=60)
                                                                                           GTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGAC   <  SRR4302535.1560095/94‑1 (MQ=60)
                                                                                           GTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGAC   <  SRR4302535.1403828/94‑1 (MQ=60)
                                                                                           GTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGAC   >  SRR4302535.919498/1‑94 (MQ=60)
                                                                                           GTCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGAC   >  SRR4302535.2747827/1‑94 (MQ=60)
                                                                                            TCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACG  <  SRR4302535.4205209/94‑1 (MQ=60)
                                                                                            TCCCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCATAAACACGTAATAAAACGTCCTCACACAATATGAGGACG  <  SRR4302535.2981021/94‑1 (MQ=60)
                                                                                             |                                                                                            
GTATATACACGAGTACATACGCCACGTTTTTGCGGGCATGCTTCCAGCGCAGGCACGTTGCTTTTCGCAACTTTGCGAGCACGTGGTTTGCGTACCAGCTGGTTAACTGTTGCCATTAAATAGCTCCTGGTTTTAGCTTTTGCTTCGTAAACACGTAATAAAACGTCCTCACACAATATGAGGACG  >  NC_000913/3472074‑3472259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑