Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,494,690	A→G	A17A (GCA→GCG)	nirC →	Nitrite transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,494,690	0	A	G	99.4%	490.2 / NA	157	A17A (GCA→GCG)	nirC	Nitrite transporter
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (140/16); minor base C (1/0); total (141/16)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 160 total aligned reads displayed.

TTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCAC  >  NC_000913/3494600‑3494779

  gTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGcc                                                                                       >  1:988681/1‑93 (MQ=255)

  gTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGcc                                                                                       <  2:2893277/93‑1 (MQ=255)

  gTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGcc                                                                                       >  2:3505906/1‑93 (MQ=255)

  gTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGcc                                                                                       >  2:3618020/1‑93 (MQ=255)

  gTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGcc                                                                                       >  1:608864/1‑93 (MQ=255)

   ttttATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCt                                                                                      >  1:1481667/1‑93 (MQ=255)

   ttttATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCt                                                                                      >  2:4232270/1‑93 (MQ=255)

    tttATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTg                                                                                     <  1:3679875/93‑1 (MQ=255)

       aTTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCg                                                                                  >  1:1266101/1‑93 (MQ=255)

        ttttttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCgg                                                                                 >  2:1915232/1‑93 (MQ=255)

         tttttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGc                                                                                >  2:4533471/1‑93 (MQ=255)

          ttttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACTCTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCa                                                                               >  1:3301692/1‑93 (MQ=255)

          ttttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCa                                                                               >  2:1546228/1‑93 (MQ=255)

           tttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCaa                                                                              >  1:3128530/1‑93 (MQ=255)

           tttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCaa                                                                              >  1:4214443/1‑93 (MQ=255)

             tGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAAt                                                                            >  1:658876/1‑93 (MQ=255)

             tGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAAt                                                                            >  1:140654/1‑93 (MQ=255)

              gTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATa                                                                           >  2:4617899/1‑93 (MQ=255)

               tttttATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATaa                                                                          >  1:277119/1‑93 (MQ=255)

               tttttATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATaa                                                                          >  1:2924209/1‑93 (MQ=255)

                 tttATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTCACGCTGCGCGCATTGCCCGCCTGTCGGCAAATAAcc                                                                        >  2:4183391/1‑93 (MQ=255)

                 tttATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAAcc                                                                        >  1:2126945/1‑93 (MQ=255)

                 tttATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAAcc                                                                        <  2:3249810/93‑1 (MQ=255)

                 tttATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAAcc                                                                        >  2:655240/1‑93 (MQ=255)

                  ttATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAAccc                                                                       >  1:2263732/1‑93 (MQ=255)

                   tATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCg                                                                      >  1:693100/1‑93 (MQ=255)

                   tATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCg                                                                      >  1:2567497/1‑93 (MQ=255)

                     ttttttAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCt                                                                    >  1:1657971/1‑93 (MQ=255)

                     ttttttAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCt                                                                    >  2:773287/1‑93 (MQ=255)

                     ttttttAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCAGCt                                                                    >  1:2835823/1‑93 (MQ=255)

                      tttttAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTc                                                                   >  1:1286082/1‑93 (MQ=255)

                        tttAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCgg                                                                 >  2:309456/1‑93 (MQ=255)

                           aaaGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCtt                                                              >  2:1272027/1‑93 (MQ=255)

                            aaGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCttt                                                             >  2:903454/1‑93 (MQ=255)

                            aaGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCttt                                                             >  1:1589723/1‑93 (MQ=255)

                            aaGGATAATCAAATGTTTACAGACACTATTAATAAGAGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCCGCttt                                                             >  2:4471658/1‑93 (MQ=255)

                             aGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCtttt                                                            >  1:3517188/1‑93 (MQ=255)

                             aGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCtttt                                                            >  1:4388446/1‑93 (MQ=255)

                              ggATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTg                                                           >  2:1745155/1‑93 (MQ=255)

                                aTAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTggg                                                         >  1:1040775/1‑93 (MQ=255)

                                aTAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTggg                                                         >  1:1836038/1‑93 (MQ=255)

                                 tAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGt                                                        >  1:3395851/1‑93 (MQ=255)

                                 tAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGt                                                        >  2:1533063/1‑93 (MQ=255)

                                 tAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGt                                                        >  1:423729/1‑93 (MQ=255)

                                 tAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGt                                                        >  1:3669190/1‑93 (MQ=255)

                                  aaTCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTc                                                       >  2:3122872/1‑93 (MQ=255)

                                   aTCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCa                                                      >  1:3937420/1‑93 (MQ=255)

                                      aaaTGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCt                                                   >  2:749437/1‑93 (MQ=255)

                                      aaaTGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCt                                                   >  2:3234424/1‑93 (MQ=255)

                                       aaTGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTc                                                  >  1:4663243/1‑93 (MQ=255)

                                       aaTGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTc                                                  >  1:625879/1‑93 (MQ=255)

                                       aaTGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTc                                                  >  2:4591248/1‑93 (MQ=255)

                                       aaTGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTc                                                  >  2:3777087/1‑93 (MQ=255)

                                        aTGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTcc                                                 >  1:4670880/1‑93 (MQ=255)

                                        aTGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTcc                                                 >  1:979365/1‑93 (MQ=255)

                                         tGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCg                                                >  1:3482753/1‑93 (MQ=255)

                                         tGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCg                                                >  2:4070160/1‑93 (MQ=255)

                                         tGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCg                                                >  1:3021097/1‑93 (MQ=255)

                                          gTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGc                                               >  2:3033699/1‑93 (MQ=255)

                                            ttACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCa                                             <  2:2205366/93‑1 (MQ=255)

                                               cAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATgg                                          >  1:742178/1‑93 (MQ=255)

                                                 gACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATggcg                                        >  1:1908900/1‑93 (MQ=255)

                                                 gACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATggcg                                        <  1:4370708/93‑1 (MQ=255)

                                                 gACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATggcg                                        >  2:2857062/1‑93 (MQ=255)

                                                     cTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATggcgggcg                                    >  1:2742176/1‑93 (MQ=255)

                                                      tATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGgcgc                                   >  1:2579206/1‑93 (MQ=255)

                                                        ttAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGt                                 >  2:3129783/1‑93 (MQ=255)

                                                          aataaGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAt                               >  2:4318556/1‑93 (MQ=255)

                                                          aataaGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAt                               >  1:4306031/1‑93 (MQ=255)

                                                           ataaGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTCtg                              >  2:2253867/1‑93 (MQ=255)

                                                           ataaGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAtg                              >  1:3798226/1‑93 (MQ=255)

                                                           ataaGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAtg                              >  2:2062557/1‑93 (MQ=255)

                                                           ataaGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTACGCCATGGCGGGCGCGTAtg                              >  1:720867/1‑93 (MQ=255)

                                                             aaGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTCtgtg                            >  2:3787480/1‑93 (MQ=255)

                                                             aaGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAtgtg                            <  1:3833490/93‑1 (MQ=255)

                                                             aaGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAtgtg                            >  1:2090289/1‑93 (MQ=255)

                                                                tgtgCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGt                         >  1:746668/1‑93 (MQ=255)

                                                                tgtgCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGACATGGCGGGCGGGTGTGGGGGt                         >  2:2474859/1‑93 (MQ=255)

                                                                 gtgCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTc                        >  1:1605953/1‑93 (MQ=255)

                                                                   gCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGGCtt                      >  1:2491305/1‑93 (MQ=255)

                                                                    cGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGGATGTGGGTCTTg                     >  2:2432931/1‑93 (MQ=255)

                                                                      gCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTggg                   >  2:741061/1‑93 (MQ=255)

                                                                       cTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGa                  >  1:4050995/1‑93 (MQ=255)

                                                                        tAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGTGat                 >  1:2639087/1‑93 (MQ=255)

                                                                        tAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGat                 <  1:1779094/93‑1 (MQ=255)

                                                                        tAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGac                 >  2:1775683/1‑92 (MQ=255)

                                                                          aCGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGatcc               >  2:2005913/1‑92 (MQ=255)

                                                                          aCGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGatca               >  1:3096159/1‑93 (MQ=255)

                                                                          aCGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGatca               >  2:4025908/1‑93 (MQ=255)

                                                                            gCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGatcatc             >  2:589906/1‑93 (MQ=255)

                                                                             cTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATcc            >  2:1191190/1‑93 (MQ=255)

                                                                              tGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCt           >  2:1321444/1‑93 (MQ=255)

                                                                               gcgcgcATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTg          >  1:3886703/1‑93 (MQ=255)

                                                                                 gcgcATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCCTCCTGAt        >  1:3736043/1‑93 (MQ=255)

                                                                                 gcgcATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGAt        <  1:3280434/93‑1 (MQ=255)

                                                                                  cgcATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGAtt       >  1:2093519/1‑93 (MQ=255)

                                                                                   gcATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGAttt      >  2:3547822/1‑93 (MQ=255)

                                                                                     aTTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTc    >  2:3837579/1‑93 (MQ=255)

                                                                                     aTTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTc    >  1:903523/1‑93 (MQ=255)

                                                                                       tGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCAc  >  1:1086915/1‑93 (MQ=255)

TTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCAC  >  NC_000913/3494600‑3494779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCAC  >  NC_000913/3494601‑3494779

TGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCC                                                                                       >  SRR4302535.995704/1‑94 (MQ=60)

TGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCC                                                                                       >  SRR4302535.3180925/1‑94 (MQ=60)

TGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCC                                                                                       >  SRR4302535.613110/1‑94 (MQ=60)

TGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTACGGCTAACGCTGCGCGCATTGCGCGCC                                                                                       >  SRR4302535.4553794/1‑94 (MQ=60)

 GTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCT                                                                                      >  SRR4302535.1492263/1‑94 (MQ=60)

  TTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTG                                                                                     >  SRR4302535.1614955/1‑94 (MQ=60)

   TTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGT                                                                                    <  SRR4302535.3705343/94‑1 (MQ=60)

     TATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCG                                                                                  >  SRR4302535.1275156/1‑94 (MQ=60)

      ATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGG                                                                                 >  SRR4302535.1693341/1‑94 (MQ=60)

       TTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGC                                                                                >  SRR4302535.2145477/1‑94 (MQ=60)

        TTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACTCTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCA                                                                               >  SRR4302535.3324651/1‑94 (MQ=60)

         TTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAA                                                                              >  SRR4302535.3150319/1‑94 (MQ=60)

         TTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAA                                                                              >  SRR4302535.4243286/1‑94 (MQ=60)

         TTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAA                                                                              >  SRR4302535.929628/1‑94 (MQ=60)

           TTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAAT                                                                            >  SRR4302535.141640/1‑94 (MQ=60)

           TTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAAT                                                                            >  SRR4302535.663474/1‑94 (MQ=60)

            TGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATA                                                                           >  SRR4302535.2800487/1‑94 (MQ=60)

            TGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATA                                                                           >  SRR4302535.3734397/1‑94 (MQ=60)

             GTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAA                                                                          >  SRR4302535.2944828/1‑94 (MQ=60)

             GTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAA                                                                          >  SRR4302535.279053/1‑94 (MQ=60)

              TTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAAC                                                                         >  SRR4302535.649666/1‑94 (MQ=60)

              TTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAAC                                                                         >  SRR4302535.2113534/1‑94 (MQ=60)

               TTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACC                                                                        >  SRR4302535.2142279/1‑94 (MQ=60)

                TTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCC                                                                       >  SRR4302535.2279862/1‑94 (MQ=60)

                 TTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCG                                                                      >  SRR4302535.2585968/1‑94 (MQ=60)

                 TTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCG                                                                      >  SRR4302535.697959/1‑94 (MQ=60)

                   ATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCT                                                                    >  SRR4302535.1669959/1‑94 (MQ=60)

                   ATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCAGCT                                                                    >  SRR4302535.2855948/1‑94 (MQ=60)

                    TTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTC                                                                   >  SRR4302535.1845574/1‑94 (MQ=60)

                    TTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTC                                                                   >  SRR4302535.1295249/1‑94 (MQ=60)

                     TTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCG                                                                  >  SRR4302535.1347303/1‑94 (MQ=60)

                     TTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCG                                                                  >  SRR4302535.387937/1‑94 (MQ=60)

                          AAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTT                                                             >  SRR4302535.1601197/1‑94 (MQ=60)

                          AAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTT                                                             >  SRR4302535.2648854/1‑94 (MQ=60)

                           AAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTT                                                            >  SRR4302535.4418466/1‑94 (MQ=60)

                           AAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTT                                                            >  SRR4302535.3541622/1‑94 (MQ=60)

                             GGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGG                                                          >  SRR4302535.407311/1‑94 (MQ=60)

                              GATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGG                                                         >  SRR4302535.1048156/1‑94 (MQ=60)

                              GATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGG                                                         >  SRR4302535.1849282/1‑94 (MQ=60)

                               ATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGT                                                        >  SRR4302535.3419475/1‑94 (MQ=60)

                               ATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGT                                                        >  SRR4302535.3694602/1‑94 (MQ=60)

                               ATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGT                                                        >  SRR4302535.426686/1‑94 (MQ=60)

                               ATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGT                                                        >  SRR4302535.4409208/1‑94 (MQ=60)

                                 AATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCA                                                      >  SRR4302535.3964275/1‑94 (MQ=60)

                                    CAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCT                                                   <  SRR4302535.740859/94‑1 (MQ=60)

                                     AAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTC                                                  >  SRR4302535.630231/1‑94 (MQ=60)

                                     AAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTC                                                  >  SRR4302535.4694775/1‑94 (MQ=60)

                                      AATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCC                                                 >  SRR4302535.4702430/1‑94 (MQ=60)

                                      AATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCC                                                 >  SRR4302535.986326/1‑94 (MQ=60)

                                       ATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCG                                                >  SRR4302535.3042254/1‑94 (MQ=60)

                                       ATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCG                                                >  SRR4302535.3506937/1‑94 (MQ=60)

                                             ACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGG                                          >  SRR4302535.747392/1‑94 (MQ=60)

                                              CAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGC                                         >  SRR4302535.3477440/1‑94 (MQ=60)

                                               AGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCG                                        >  SRR4302535.3342638/1‑94 (MQ=60)

                                               AGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCG                                        >  SRR4302535.1922660/1‑94 (MQ=60)

                                               AGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCG                                        >  SRR4302535.356870/1‑94 (MQ=60)

                                               AGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCG                                        >  SRR4302535.3093761/1‑94 (MQ=60)

                                                GACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGG                                       >  SRR4302535.668942/1‑94 (MQ=60)

                                                GACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGG                                       <  SRR4302535.4400616/94‑1 (MQ=60)

                                                   ACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCG                                    >  SRR4302535.2761719/1‑94 (MQ=60)

                                                   ACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCG                                    >  SRR4302535.4329640/1‑94 (MQ=60)

                                                    CTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGC                                   >  SRR4302535.2597738/1‑94 (MQ=60)

                                                      ATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGT                                 >  SRR4302535.3823306/1‑94 (MQ=60)

                                                        TAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAT                               >  SRR4302535.1443663/1‑94 (MQ=60)

                                                        TAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAT                               >  SRR4302535.4335491/1‑94 (MQ=60)

                                                        TAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGAGGGCGCGGAT                               >  SRR4302535.1137521/1‑94 (MQ=60)

                                                         AATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATG                              >  SRR4302535.3824412/1‑94 (MQ=60)

                                                         AATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATG                              >  SRR4302535.2089205/1‑94 (MQ=60)

                                                         AATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTACGCCATGGCGGGCGCGTATG                              >  SRR4302535.725930/1‑94 (MQ=60)

                                                          ATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGT                             >  SRR4302535.826571/1‑94 (MQ=60)

                                                           TAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTG                            >  SRR4302535.2105353/1‑94 (MQ=60)

                                                            AAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGG                           <  SRR4302535.3859926/94‑1 (MQ=60)

                                                              GTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCCTGGCGGGCGCGTGTGTGGGT                         >  SRR4302535.2687299/1‑94 (MQ=60)

                                                              GTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGT                         >  SRR4302535.751921/1‑94 (MQ=60)

                                                               TGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTC                        >  SRR4302535.1617541/1‑94 (MQ=60)

                                                                 TGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGGCTT                      >  SRR4302535.2509280/1‑94 (MQ=60)

                                                                   CGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGG                    >  SRR4302535.4224347/1‑94 (MQ=60)

                                                                     GCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGA                  >  SRR4302535.4078729/1‑94 (MQ=60)

                                                                      CTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGTGAT                 >  SRR4302535.2657991/1‑94 (MQ=60)

                                                                       TAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATC                <  SRR4302535.1791977/94‑1 (MQ=60)

                                                                        AACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCA               <  SRR4302535.2510057/94‑1 (MQ=60)

                                                                        AACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCA               >  SRR4302535.3117722/1‑94 (MQ=60)

                                                                            CTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCT           <  SRR4302535.473827/94‑1 (MQ=60)

                                                                             TGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTG          >  SRR4302535.3913363/1‑94 (MQ=60)

                                                                             TGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTG          <  SRR4302535.3009790/94‑1 (MQ=60)

                                                                               CGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCCTCCTGAT        >  SRR4302535.3761902/1‑94 (MQ=60)

                                                                                GCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATT       >  SRR4302535.2108609/1‑94 (MQ=60)

                                                                                GCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATT       <  SRR4302535.3303219/94‑1 (MQ=60)

                                                                                   CATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTC    >  SRR4302535.909924/1‑94 (MQ=60)

                                                                                     TTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCAC  >  SRR4302535.1094642/1‑94 (MQ=60)

TGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCAC  >  NC_000913/3494601‑3494779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`