Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,509,089 T→C N5S (AAC→AGC) 
E225E (GAA→GAG
yhfY ←
yhfZ ←
hypothetical protein
hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,509,0890TC100.0% 719.9 / NA 228N5S (AAC→AGC) 
E225E (GAA→GAG
yhfY
yhfZ
hypothetical protein
hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (131/97);  total (131/97)

Only 100 of 235 total aligned reads displayed.

CCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATC  >  NC_000913/3508999‑3509178
                                                                                          |                                                                                         
ccTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTc                                                                                         >  2:4069732/1‑93 (MQ=255)
ccTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTc                                                                                         >  2:223654/1‑93 (MQ=255)
 cTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTcc                                                                                        >  1:368483/1‑93 (MQ=255)
 cTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTcc                                                                                        <  2:4463243/93‑1 (MQ=255)
 cTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCAGCTcc                                                                                        >  1:4309928/1‑93 (MQ=255)
  tttGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCt                                                                                       >  2:2323739/1‑93 (MQ=255)
  tttGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCt                                                                                       >  2:1375948/1‑93 (MQ=255)
  tttGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCt                                                                                       <  1:188669/93‑1 (MQ=255)
  tttGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCt                                                                                       >  1:1250870/1‑93 (MQ=255)
    tGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGt                                                                                     <  1:1014210/93‑1 (MQ=255)
    tGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGt                                                                                     >  1:4199275/1‑93 (MQ=255)
        gATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTccc                                                                                 <  2:2381234/93‑1 (MQ=255)
        gATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGGTTAATAACTCGGCTCCTGTTccc                                                                                 >  1:1670101/1‑93 (MQ=255)
        gATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTACATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTccc                                                                                 >  1:1725309/1‑93 (MQ=255)
         aTGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTcccc                                                                                >  1:3742956/1‑93 (MQ=255)
         aTGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTcccc                                                                                >  1:4070626/1‑93 (MQ=255)
          tGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCca                                                                               >  2:2546752/1‑93 (MQ=255)
           gTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCcac                                                                              >  1:3804612/1‑93 (MQ=255)
              cTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCcactca                                                                           >  1:2368179/1‑93 (MQ=255)
               ttATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCTGCTCCTGCTCCCcactcac                                                                          >  1:1202267/1‑93 (MQ=255)
               ttATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCcactcac                                                                          <  1:4615909/93‑1 (MQ=255)
               ttATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCcactcac                                                                          >  1:1372430/1‑93 (MQ=255)
                 aTCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTa                                                                        <  2:3632105/93‑1 (MQ=255)
                 aTCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTa                                                                        <  1:2726486/93‑1 (MQ=255)
                    aaTAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCGCCACTCACTAccc                                                                     >  2:2571924/1‑93 (MQ=255)
                    aaTAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTAccc                                                                     >  1:769986/1‑93 (MQ=255)
                      tAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCgt                                                                   >  1:4354381/1‑93 (MQ=255)
                      tAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCACACTCACTACCCgt                                                                   >  2:515569/1‑93 (MQ=255)
                        aCGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCgttg                                                                 <  1:3838086/93‑1 (MQ=255)
                         cGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCgttgt                                                                >  1:4563175/1‑93 (MQ=255)
                          gcctgcctCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCgttgtt                                                               >  1:4281666/1‑93 (MQ=255)
                            ctgcctCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGa                                                             <  1:2290302/93‑1 (MQ=255)
                            ctgcctCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGa                                                             >  1:3925547/1‑93 (MQ=255)
                            ctgcctCGCAAAGCAGGTTGAGTCTGGTTTCAATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGa                                                             >  1:2004148/1‑93 (MQ=255)
                                 tCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGc                                                        >  1:1939406/1‑93 (MQ=255)
                                 tCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGc                                                        >  1:3638186/1‑93 (MQ=255)
                                  cGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCg                                                       <  1:4477913/93‑1 (MQ=255)
                                     aaaGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGc                                                    >  1:4121661/1‑93 (MQ=255)
                                     aaaGCAGGATGAGTCTGGTCTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGc                                                    >  2:4542431/1‑93 (MQ=255)
                                      aaGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCa                                                   >  1:3167414/1‑93 (MQ=255)
                                       aGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAg                                                  <  1:1437199/93‑1 (MQ=255)
                                       aGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAg                                                  <  1:160593/93‑1 (MQ=255)
                                       aGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAg                                                  >  2:1212599/1‑93 (MQ=255)
                                         cAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAggg                                                <  2:1734052/93‑1 (MQ=255)
                                          aGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGc                                               >  1:3056912/1‑93 (MQ=255)
                                               gAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGtt                                          <  1:2621360/93‑1 (MQ=255)
                                                aGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGttt                                         <  1:4248887/93‑1 (MQ=255)
                                                aGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGttt                                         >  1:976721/1‑93 (MQ=255)
                                                 gTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTa                                        <  2:1519399/93‑1 (MQ=255)
                                                 gTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTa                                        >  2:2499957/1‑93 (MQ=255)
                                                 gTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTa                                        <  2:3466011/93‑1 (MQ=255)
                                                 gTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTa                                        <  2:3756891/93‑1 (MQ=255)
                                                   ttGGGTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATc                                      <  1:1309948/92‑1 (MQ=255)
                                                   cTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATc                                      >  1:3317711/1‑93 (MQ=255)
                                                    tGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCt                                     <  2:314823/93‑1 (MQ=255)
                                                     ggTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTa                                    >  2:3433095/1‑93 (MQ=255)
                                                      gTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTAc                                   <  1:2124590/93‑1 (MQ=255)
                                                       tttCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACa                                  <  1:3620619/93‑1 (MQ=255)
                                                         tCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTTCAAc                                >  2:4369196/1‑93 (MQ=255)
                                                           cATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACgg                              <  1:2403997/93‑1 (MQ=255)
                                                           cATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACgg                              >  1:3020629/1‑93 (MQ=255)
                                                            atatCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGc                             <  2:130590/93‑1 (MQ=255)
                                                              atCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCAc                           <  2:2089475/93‑1 (MQ=255)
                                                               tCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACg                          >  2:66111/1‑93 (MQ=255)
                                                               tCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACg                          >  2:3392225/1‑93 (MQ=255)
                                                               tCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACg                          >  1:668178/1‑93 (MQ=255)
                                                               tCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTAACACGGCACg                          >  1:903473/1‑93 (MQ=255)
                                                                cAGATGCTTTTCGTTTAATAACTCTGCTCCTGCTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACgc                         >  2:4547338/1‑93 (MQ=255)
                                                                cAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACgc                         <  2:2709498/93‑1 (MQ=255)
                                                                 aGATGCCGTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACcgcacgca                        >  2:3804671/1‑93 (MQ=255)
                                                                  gATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACgcag                       >  2:3028542/1‑93 (MQ=255)
                                                                    tGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACgcagca                     <  1:143074/93‑1 (MQ=255)
                                                                    tGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACgcagca                     >  1:25606/1‑93 (MQ=255)
                                                                     gCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGTCACgcattag                    >  2:2791110/1‑89 (MQ=255)
                                                                      ccTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgt                   <  1:3941974/93‑1 (MQ=255)
                                                                      ccTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgt                   >  1:3521523/1‑93 (MQ=255)
                                                                      ccTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgt                   >  1:80409/1‑93 (MQ=255)
                                                                        tttCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACACGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAAAGGCACGCAGCAgttg                 >  1:1845796/1‑93 (MQ=255)
                                                                         ttCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgttgt                <  2:752194/93‑1 (MQ=255)
                                                                         ttCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgttgt                <  2:1172417/93‑1 (MQ=255)
                                                                          tCGTTTAATAACTCGGCTCCTGTTCCTCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgttgtt               <  1:294951/93‑1 (MQ=255)
                                                                          tCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgttgtt               <  1:1459289/93‑1 (MQ=255)
                                                                          tCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgttgtt               <  2:4677769/93‑1 (MQ=255)
                                                                           cGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGttgttg              >  2:109491/1‑93 (MQ=255)
                                                                           cGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGttgttg              >  2:1968836/1‑93 (MQ=255)
                                                                            gTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGc             >  2:329373/1‑93 (MQ=255)
                                                                            gTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGc             >  1:1829735/1‑93 (MQ=255)
                                                                               taataaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCAtt          <  2:1995449/93‑1 (MQ=255)
                                                                                aataaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTg         >  2:3539876/1‑93 (MQ=255)
                                                                                aataaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTg         >  2:1447938/1‑93 (MQ=255)
                                                                                  taaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTggg       <  1:1528130/93‑1 (MQ=255)
                                                                                    aCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTa     >  2:3084116/1‑93 (MQ=255)
                                                                                    aCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTa     >  1:3384377/1‑93 (MQ=255)
                                                                                     cTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTaa    <  2:178509/93‑1 (MQ=255)
                                                                                     cTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTaa    <  2:2630564/93‑1 (MQ=255)
                                                                                     cTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTaa    >  1:3484135/1‑93 (MQ=255)
                                                                                      tCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAat   >  1:1072375/1‑93 (MQ=255)
                                                                                      tCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAat   >  1:2201935/1‑93 (MQ=255)
                                                                                       cGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAatc  <  2:90989/93‑1 (MQ=255)
                                                                                       cGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAatc  <  2:94125/93‑1 (MQ=255)
                                                                                          |                                                                                         
CCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATC  >  NC_000913/3508999‑3509178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCATC  >  NC_000913/3508997‑3509181
                                                                                            |                                                                                            
TGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCT                                                                                             <  SRR4302535.1269288/94‑1 (MQ=60)
  CCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCC                                                                                           >  SRR4302535.371027/1‑94 (MQ=60)
  CCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCC                                                                                           >  SRR4302535.1885419/1‑94 (MQ=60)
  CCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCAGCTCC                                                                                           >  SRR4302535.4339412/1‑94 (MQ=60)
   CTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCT                                                                                          >  SRR4302535.2217928/1‑94 (MQ=60)
   CTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCT                                                                                          >  SRR4302535.1259802/1‑94 (MQ=60)
    TTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTG                                                                                         <  SRR4302535.189974/94‑1 (MQ=60)
     TTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGT                                                                                        <  SRR4302535.3510906/94‑1 (MQ=60)
     TTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGT                                                                                        >  SRR4302535.4228012/1‑94 (MQ=60)
     TTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGGTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGT                                                                                        >  SRR4302535.1844473/1‑94 (MQ=60)
      TGCAGATGTCTTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTT                                                                                       <  SRR4302535.1251966/94‑1 (MQ=60)
      TGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTT                                                                                       <  SRR4302535.1021420/94‑1 (MQ=60)
      TGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTT                                                                                       <  SRR4302535.4297409/94‑1 (MQ=60)
         AGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCC                                                                                    >  SRR4302535.3902003/1‑94 (MQ=60)
         AGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGGTTAATAACTCGGCTCCTGTTCCC                                                                                    >  SRR4302535.1682189/1‑94 (MQ=60)
         AGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTACATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCC                                                                                    >  SRR4302535.1737787/1‑94 (MQ=60)
          GATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCC                                                                                   >  SRR4302535.3768852/1‑94 (MQ=60)
          GATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCC                                                                                   >  SRR4302535.4098483/1‑94 (MQ=60)
          GATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCC                                                                                   >  SRR4302535.1441147/1‑94 (MQ=60)
            TGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCCC                                                                                 >  SRR4302535.1075144/1‑94 (MQ=60)
            TGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCAC                                                                                 >  SRR4302535.3830838/1‑94 (MQ=60)
             GTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACT                                                                                <  SRR4302535.391213/94‑1 (MQ=60)
             GTCCTTATCAATAACGCATGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACT                                                                                <  SRR4302535.2344994/94‑1 (MQ=60)
              TCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTC                                                                               <  SRR4302535.4103440/94‑1 (MQ=60)
               CCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCA                                                                              >  SRR4302535.1531188/1‑94 (MQ=60)
               CCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCA                                                                              <  SRR4302535.302488/94‑1 (MQ=60)
               CCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCA                                                                              >  SRR4302535.2385180/1‑94 (MQ=60)
                CTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCTGCTCCTGCTCCCCACTCAC                                                                             >  SRR4302535.1210896/1‑94 (MQ=60)
                CTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCAC                                                                             >  SRR4302535.1382237/1‑94 (MQ=60)
                 TTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACT                                                                            <  SRR4302535.4647275/94‑1 (MQ=60)
                  TATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTC                                                                           >  SRR4302535.4536187/1‑94 (MQ=60)
                   ATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTAC                                                                          <  SRR4302535.2745960/94‑1 (MQ=60)
                    TCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGCTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACC                                                                         >  SRR4302535.2221759/1‑94 (MQ=60)
                     CAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCC                                                                        >  SRR4302535.775404/1‑94 (MQ=60)
                     CAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCC                                                                        >  SRR4302535.410854/1‑94 (MQ=60)
                       ATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGT                                                                      >  SRR4302535.4384183/1‑94 (MQ=60)
                          ACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGT                                                                   >  SRR4302535.4594316/1‑94 (MQ=60)
                          ACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGT                                                                   <  SRR4302535.3864543/94‑1 (MQ=60)
                           CGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTT                                                                  >  SRR4302535.2427990/1‑94 (MQ=60)
                           CGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTT                                                                  >  SRR4302535.4310961/1‑94 (MQ=60)
                             CCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGA                                                                >  SRR4302535.3952370/1‑94 (MQ=60)
                             CCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCAATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGA                                                                >  SRR4302535.2018590/1‑94 (MQ=60)
                              CTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGAT                                                               <  SRR4302535.2306690/94‑1 (MQ=60)
                               TGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATG                                                              >  SRR4302535.2062561/1‑94 (MQ=60)
                                  CTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGC                                                           >  SRR4302535.1498133/1‑94 (MQ=60)
                                  CTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGC                                                           >  SRR4302535.1953374/1‑94 (MQ=60)
                                  CTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGC                                                           >  SRR4302535.3663395/1‑94 (MQ=60)
                                   TCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCG                                                          <  SRR4302535.3763080/94‑1 (MQ=60)
                                    CGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGA                                                         <  SRR4302535.4508658/94‑1 (MQ=60)
                                      CAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGC                                                       >  SRR4302535.4149865/1‑94 (MQ=60)
                                      CAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGC                                                       >  SRR4302535.3506585/1‑94 (MQ=60)
                                       AAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCA                                                      >  SRR4302535.3189359/1‑94 (MQ=60)
                                       AAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCA                                                      >  SRR4302535.835542/1‑94 (MQ=60)
                                       AAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCA                                                      <  SRR4302535.1700283/94‑1 (MQ=60)
                                       AAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCA                                                      >  SRR4302535.4292635/1‑94 (MQ=60)
                                       AAACCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCA                                                      >  SRR4302535.4008708/1‑94 (MQ=60)
                                         AGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGG                                                    <  SRR4302535.1447471/94‑1 (MQ=60)
                                         AGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGG                                                    >  SRR4302535.2557082/1‑94 (MQ=60)
                                         AGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGG                                                    <  SRR4302535.161720/94‑1 (MQ=60)
                                         AGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGG                                                    >  SRR4302535.3109817/1‑94 (MQ=60)
                                          GCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGG                                                   <  SRR4302535.3824447/94‑1 (MQ=60)
                                           CAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGC                                                  >  SRR4302535.3078304/1‑94 (MQ=60)
                                             GGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGT                                                <  SRR4302535.579822/94‑1 (MQ=60)
                                                 GAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTT                                            >  SRR4302535.983654/1‑94 (MQ=60)
                                                 GAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTT                                            <  SRR4302535.2640155/94‑1 (MQ=60)
                                                  AGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTA                                           <  SRR4302535.4277987/94‑1 (MQ=60)
                                                  AGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTA                                           >  SRR4302535.4633450/1‑94 (MQ=60)
                                                   GTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTAT                                          <  SRR4302535.4648220/94‑1 (MQ=60)
                                                    TCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATC                                         >  SRR4302535.3340795/1‑94 (MQ=60)
                                                    TCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATC                                         <  SRR4302535.1874831/94‑1 (MQ=60)
                                                     ttgggTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCT                                        <  SRR4302535.1319311/89‑1 (MQ=60)
                                                     CTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTCTCT                                        >  SRR4302535.1383641/1‑94 (MQ=60)
                                                       GGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTAC                                      >  SRR4302535.1635074/1‑94 (MQ=60)
                                                       GGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTAC                                      >  SRR4302535.2401874/1‑94 (MQ=60)
                                                        GTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACA                                     <  SRR4302535.1691167/94‑1 (MQ=60)
                                                        GTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACA                                     <  SRR4302535.2139902/94‑1 (MQ=60)
                                                         TTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAA                                    <  SRR4302535.3645718/94‑1 (MQ=60)
                                                            CCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGG                                 >  SRR4302535.3041782/1‑94 (MQ=60)
                                                             CATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGC                                <  SRR4302535.2421292/94‑1 (MQ=60)
                                                             CATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGC                                <  SRR4302535.3594330/94‑1 (MQ=60)
                                                              ATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCC                               >  SRR4302535.812207/1‑94 (MQ=60)
                                                              ATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCA                               <  SRR4302535.4355595/94‑1 (MQ=60)
                                                               TATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCAC                              <  SRR4302535.2635124/94‑1 (MQ=60)
                                                               TATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCAC                              >  SRR4302535.4449618/1‑94 (MQ=60)
                                                                ATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACG                             >  SRR4302535.672834/1‑94 (MQ=60)
                                                                ATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTAACACGGCACG                             >  SRR4302535.909874/1‑94 (MQ=60)
                                                                   AGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAG                          >  SRR4302535.3826974/1‑94 (MQ=60)
                                                                    GATGCCTTTCGTTTAATAACTCGGCTCCTGTTTCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGC                         >  SRR4302535.743329/1‑94 (MQ=60)
                                                                    GATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGC                         <  SRR4302535.4470550/94‑1 (MQ=60)
                                                                    GATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGC                         >  SRR4302535.1351302/1‑94 (MQ=60)
                                                                     ATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCA                        <  SRR4302535.3955614/94‑1 (MQ=60)
                                                                     ATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCA                        >  SRR4302535.25804/1‑94 (MQ=60)
                                                                      TGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAG                       <  SRR4302535.144071/94‑1 (MQ=60)
                                                                       GCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGT                      >  SRR4302535.80982/1‑94 (MQ=60)
                                                                       GCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGT                      >  SRR4302535.3545981/1‑94 (MQ=60)
                                                                        CCTTTCGTTTAATACCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTT                     <  SRR4302535.4334330/94‑1 (MQ=60)
                                                                        CCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTT                     >  SRR4302535.4247167/1‑94 (MQ=60)
                                                                        CCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTT                     <  SRR4302535.3968881/94‑1 (MQ=60)
                                                                        CCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTT                     <  SRR4302535.3655564/94‑1 (MQ=60)
                                                                        CCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTT                     >  SRR4302535.783483/1‑94 (MQ=60)
                                                                         CTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTTCCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTG                    <  SRR4302535.2165542/94‑1 (MQ=60)
                                                                         CTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTG                    >  SRR4302535.2882157/1‑94 (MQ=60)
                                                                         CTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTG                    >  SRR4302535.1466203/1‑94 (MQ=60)
                                                                         CTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTG                    <  SRR4302535.3207698/94‑1 (MQ=60)
                                                                         CTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACACGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAAAGGCACGCAGCAGTTG                    >  SRR4302535.1859097/1‑94 (MQ=60)
                                                                           TTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTT                  >  SRR4302535.3655342/1‑94 (MQ=60)
                                                                            TCGTTTAATAACTCGGCTCCTGTTCCTCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTG                 <  SRR4302535.297011/94‑1 (MQ=60)
                                                                            TCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTG                 <  SRR4302535.1469745/94‑1 (MQ=60)
                                                                            TCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTG                 <  SRR4302535.923023/94‑1 (MQ=60)
                                                                             CGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGC                >  SRR4302535.1842946/1‑94 (MQ=60)
                                                                               TTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCAT              >  SRR4302535.139750/1‑94 (MQ=60)
                                                                                TTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATT             <  SRR4302535.1313708/94‑1 (MQ=60)
                                                                                TTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATT             >  SRR4302535.1819709/1‑94 (MQ=60)
                                                                                  AATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGG           >  SRR4302535.3840709/1‑94 (MQ=60)
                                                                                  AATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGG           <  SRR4302535.269741/94‑1 (MQ=60)
                                                                                  AATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGG           <  SRR4302535.3068638/94‑1 (MQ=60)
                                                                                  AATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGG           >  SRR4302535.3447859/1‑94 (MQ=60)
                                                                                   ATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGG          >  SRR4302535.1989540/1‑94 (MQ=60)
                                                                                    TAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGT         <  SRR4302535.1539136/94‑1 (MQ=60)
                                                                                    TAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGT         <  SRR4302535.3679645/94‑1 (MQ=60)
                                                                                    TAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGT         <  SRR4302535.1947048/94‑1 (MQ=60)
                                                                                    TAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGT         <  SRR4302535.1211664/94‑1 (MQ=60)
                                                                                     AACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTA        >  SRR4302535.1100349/1‑94 (MQ=60)
                                                                                     AACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTA        >  SRR4302535.4169528/1‑94 (MQ=60)
                                                                                     AACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTA        >  SRR4302535.3407925/1‑94 (MQ=60)
                                                                                     AACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTA        >  SRR4302535.3354915/1‑94 (MQ=60)
                                                                                     AACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTA        <  SRR4302535.3129548/94‑1 (MQ=60)
                                                                                     AACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTA        <  SRR4302535.2856383/94‑1 (MQ=60)
                                                                                      ACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAT       >  SRR4302535.1586472/1‑94 (MQ=60)
                                                                                      ACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAA       >  SRR4302535.3508326/1‑94 (MQ=60)
                                                                                       CTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAAT      >  SRR4302535.1079998/1‑94 (MQ=60)
                                                                                       CTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAAT      >  SRR4302535.2217628/1‑94 (MQ=60)
                                                                                         CGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCA    >  SRR4302535.1854119/1‑94 (MQ=60)
                                                                                         CGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCA    <  SRR4302535.2065068/94‑1 (MQ=60)
                                                                                          GGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCAT   <  SRR4302535.1568984/94‑1 (MQ=60)
                                                                                          GGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCAT   <  SRR4302535.19410/94‑1 (MQ=60)
                                                                                          GGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCAT   >  SRR4302535.913470/1‑94 (MQ=60)
                                                                                          GGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCAT   <  SRR4302535.2858126/94‑1 (MQ=60)
                                                                                           GCTCCTGTTCCCCCCTCACTCCCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCATC  <  SRR4302535.3060330/94‑1 (MQ=60)
                                                                                           GCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCATC  >  SRR4302535.4230179/1‑94 (MQ=60)
                                                                                           GCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCATC  >  SRR4302535.1757908/1‑94 (MQ=60)
                                                                                            |                                                                                            
TGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATCATC  >  NC_000913/3508997‑3509181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: