Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,554,113 |
Δ1 bp |
coding (372/396 nt) |
yhgKJ ← |
RNA phosphage cyclase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,554,113 | 0 | C | . | 99.3%
| 621.1
/ ‑3.0
| 142 | coding (372/396 nt) | yhgKJ | RNA phosphage cyclase |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base . (57/83); total (59/83) |
| Fisher's exact test for biased strand distribution p-value = 4.11e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 163 total aligned reads displayed.
GGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGAC‑GGGTTATCGGTCGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC > NC_000913/3554027‑3554199
|
ggTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGt‑gccg‑cc > 1:693952/1‑92 (MQ=255)
ggTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGt‑gccg‑cc > 2:3004909/1‑92 (MQ=255)
gTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCCGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGGTATCGGt‑gccg‑ccg > 1:4096567/1‑91 (MQ=255)
gTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCCGCGGATAAAATCCGCAAGCGGCGCCGAC‑GGGCTATCGGt‑gccg‑ccg > 2:4302840/1‑91 (MQ=255)
tttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGAAGGCGGCGCCGAC‑GGGTTATCGGt‑gccg‑ccgc < 1:4251317/93‑4 (MQ=255)
ttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGt‑gccg‑ccgct < 1:3119883/93‑5 (MQ=255)
cTGATGAATTCCTTTTTCCGCCAGCAGCGGCTCCAGCGCCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCAc < 1:4654931/93‑1 (MQ=255)
cTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCAc < 2:3195842/93‑1 (MQ=255)
cTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCAc < 1:221190/93‑1 (MQ=255)
tgatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACt > 2:3313969/1‑93 (MQ=255)
tgatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACt > 1:1687361/1‑93 (MQ=255)
tgatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACt > 2:4180367/1‑93 (MQ=255)
gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACtt > 1:1256687/1‑93 (MQ=255)
gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACtt > 1:598811/1‑93 (MQ=255)
gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGGTATCGGT‑GCCGCCGCTCACtt > 1:4193217/1‑93 (MQ=255)
gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGAGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACtt > 2:4344219/1‑93 (MQ=255)
gatgaATCCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACtt < 1:890229/93‑1 (MQ=255)
atgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTc > 2:3220426/1‑93 (MQ=255)
gaATTCCTATTTTCGCCAGCAGCGGCTCTAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCaa > 1:1507279/1‑93 (MQ=255)
gaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCaa < 2:1684647/93‑1 (MQ=255)
gaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCCCCGCC‑GGGTTATCGGT‑GCCGCCGCTCACTTCaa > 1:663363/1‑93 (MQ=255)
aaTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAac > 2:3833969/1‑93 (MQ=255)
aTTCCTATTTTCGCGAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAaca < 2:361236/93‑1 (MQ=255)
aTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGTTCCGC‑CGCTCACTTCAaca > 1:3831162/1‑93 (MQ=255)
aTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAaca > 2:714295/1‑93 (MQ=255)
aTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAaca < 2:1890220/93‑1 (MQ=255)
ttCCTATTTTCGCCAGCAGCGGCTCCAGCACCCCGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGGTATCGG‑CGCCGCCGCTCACTTCAacac > 1:3076946/1‑93 (MQ=255)
cTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGGTATCGGT‑GCCGCCGCTGACTTCAACAcgcg > 1:3791446/1‑93 (MQ=255)
tATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGa < 1:2958011/93‑1 (MQ=255)
tATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGa > 2:3935684/1‑93 (MQ=255)
aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGaa > 1:1889856/1‑93 (MQ=255)
ttttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAg > 2:2285909/1‑93 (MQ=255)
ttttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAg < 2:4380258/93‑1 (MQ=255)
tgttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAg < 2:3368299/91‑1 (MQ=255)
tttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAgg < 1:2760043/93‑1 (MQ=255)
tttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAgg < 1:3353429/93‑1 (MQ=255)
caccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTcc < 2:4598739/91‑1 (MQ=255)
cccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCa < 2:2316461/92‑1 (MQ=255)
gcagcagCGGCGCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAt < 1:786299/92‑1 (MQ=255)
ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAt < 1:2457941/93‑1 (MQ=255)
ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAt < 2:2732523/93‑1 (MQ=255)
cagcagCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGTGTCGC‑CGCTGACTTCAACACGCGAAGAGCCATc > 2:4547664/1‑93 (MQ=255)
cagcagCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATc < 2:2953682/93‑1 (MQ=255)
cagcagCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATc < 1:3583968/93‑1 (MQ=255)
agcagcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCg < 1:3723252/93‑1 (MQ=255)
gcagcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCgg > 2:2525845/1‑93 (MQ=255)
gcagcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCgg > 1:3654856/1‑93 (MQ=255)
agcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCa < 2:1774752/93‑1 (MQ=255)
gcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCaa > 2:482215/1‑93 (MQ=255)
gCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAcc > 2:1730319/1‑93 (MQ=255)
gCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAcc < 2:119497/93‑1 (MQ=255)
gCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAcc < 1:3937920/93‑1 (MQ=255)
cTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCACACca > 1:1112556/1‑93 (MQ=255)
tCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcac < 2:2133212/93‑1 (MQ=255)
ccAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAACGTCCATCGGCAAACcaca > 1:2376299/1‑93 (MQ=255)
cAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAg < 1:1473037/93‑1 (MQ=255)
aGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgc > 2:3403407/1‑93 (MQ=255)
gCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgcg < 2:603072/93‑1 (MQ=255)
gCACCCGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgcg < 1:3302346/93‑1 (MQ=255)
cccGGCGGGAAAAATCCGCAGGCGGCGCCGGCGGGGTTAT‑GGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCgg < 1:4493988/93‑1 (MQ=255)
ccGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCggg < 1:707844/93‑1 (MQ=255)
ccGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCggg > 1:3454541/1‑93 (MQ=255)
ccGGCGGATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCggg > 1:4540056/1‑93 (MQ=255)
cggcggATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgc > 2:3299450/1‑93 (MQ=255)
ggcggATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgca > 2:435680/1‑93 (MQ=255)
gcggATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcag > 2:821224/1‑93 (MQ=255)
cggATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcagc > 2:1498242/1‑93 (MQ=255)
ggATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGTCCCGC‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcagca > 1:2954037/1‑93 (MQ=255)
ggATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcagca > 2:1577049/1‑93 (MQ=255)
gATAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAc > 2:308630/1‑93 (MQ=255)
tAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCg < 1:4048654/93‑1 (MQ=255)
tAAAATCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCg < 2:2241888/93‑1 (MQ=255)
aaaTCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGGAAACCACAGCGCGGGCCGCACCGtt > 2:249021/1‑93 (MQ=255)
aaaTCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAANCCACAGCGCGGGCAGCACCNtt > 1:3311862/1‑93 (MQ=255)
aaaTCCGCAGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGtt > 1:99594/1‑93 (MQ=255)
gcaGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTgcagc < 1:687445/91‑1 (MQ=255)
caGGCGGCGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTgcagca < 1:2901959/92‑1 (MQ=255)
cggcggcGCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAc < 1:1358616/92‑1 (MQ=255)
cggcgCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAg < 2:2428065/93‑1 (MQ=255)
cggcgCCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAg < 1:2704207/93‑1 (MQ=255)
gcgcCGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCg < 1:4273601/93‑1 (MQ=255)
ccGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTAc > 2:2046265/1‑93 (MQ=255)
ccGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTAc < 1:680741/93‑1 (MQ=255)
ccGAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTAc < 1:2877747/93‑1 (MQ=255)
gAC‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACaa > 1:226068/1‑93 (MQ=255)
c‑GGTTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACt < 2:3556924/93‑1 (MQ=255)
c‑GGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACt < 1:1742458/93‑1 (MQ=255)
gggTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACtt < 1:874692/93‑1 (MQ=255)
ggTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTc > 2:3574666/1‑93 (MQ=255)
ggTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTc < 2:3776255/93‑1 (MQ=255)
ggTGATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTc < 1:3714123/93‑1 (MQ=255)
gTTATCGGTTCCTC‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTcc < 2:3484842/93‑1 (MQ=255)
gTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTcc < 2:3493708/93‑1 (MQ=255)
gTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTcc < 2:2099889/93‑1 (MQ=255)
gTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTcc > 2:2789970/1‑93 (MQ=255)
ttATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCg < 1:2494374/93‑1 (MQ=255)
ttATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCg < 2:2383889/93‑1 (MQ=255)
tATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCgg < 2:1879595/93‑1 (MQ=255)
tATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCgg < 2:2575326/93‑1 (MQ=255)
aTCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGgc < 2:2532608/93‑1 (MQ=255)
|
GGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGAC‑GGGTTATCGGTCGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC > NC_000913/3554027‑3554199
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGACGGGTTATCGGT‑‑CGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGG > NC_000913/3554021‑3554198
|
CAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑G < SRR4302535.1733380/94‑1 (MQ=60)
CAGCGTGGTTTGCTGATGAATGCCTATGTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑G < SRR4302535.2109141/94‑1 (MQ=60)
GCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC < SRR4302535.4530302/94‑1 (MQ=60)
GCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC < SRR4302535.455291/94‑1 (MQ=60)
TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCC > SRR4302535.698820/1‑94 (MQ=60)
GGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCCGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTATCGGTGCCGCCG > SRR4302535.4124605/1‑94 (MQ=60)
GTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCACGCGGAGCCGACGGGGTATCGGTGGCGCCG‑C > SRR4302535.2799551/1‑94 (MQ=60)
CTGATGAATTCCTTTTTCCGCCAGCAGCGGCTCCAGCGCCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACT < SRR4302535.4686438/94‑1 (MQ=60)
CTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACT > SRR4302535.1699575/1‑94 (MQ=60)
CTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACT < SRR4302535.222715/94‑1 (MQ=60)
TGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTT > SRR4302535.1265676/1‑94 (MQ=60)
TGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTT > SRR4302535.602997/1‑94 (MQ=60)
TGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTATCGGT‑‑‑GCCGCCGCTCACTT > SRR4302535.4221911/1‑94 (MQ=60)
GATGAATCCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTC < SRR4302535.896537/94‑1 (MQ=60)
ATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCA < SRR4302535.3865538/94‑1 (MQ=60)
TGAATTCCTATTTTCGCCAGCAGCGGCTCTAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAA > SRR4302535.1518115/1‑94 (MQ=60)
TGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCCCCGCCGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAA > SRR4302535.667998/1‑94 (MQ=60)
GAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAAC < SRR4302535.883003/94‑1 (MQ=60)
AATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTTCCGC‑‑‑CGCTCACTTCAACA > SRR4302535.3857581/1‑94 (MQ=60)
AATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACA < SRR4302535.2052591/94‑1 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCCGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTATCGG‑‑‑CGCCGCCGCTCACTTCAACAC > SRR4302535.3098410/1‑94 (MQ=60)
CCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCG > SRR4302535.2977012/1‑94 (MQ=60)
CCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTATCGGT‑‑‑GCCGCCGCTGACTTCAACACGCG > SRR4302535.3817587/1‑94 (MQ=60)
TATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAA > SRR4302535.1903467/1‑94 (MQ=60)
TATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAA < SRR4302535.2978785/94‑1 (MQ=60)
TTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGT < SRR4302535.3376783/94‑1 (MQ=60)
TTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGT < SRR4302535.2779712/94‑1 (MQ=60)
TGCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTC < SRR4302535.4059028/94‑1 (MQ=60)
GCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAT < SRR4302535.3462515/94‑1 (MQ=60)
GCAGCAGCGGCGCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATC < SRR4302535.791809/94‑1 (MQ=60)
CCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATC < SRR4302535.3750937/94‑1 (MQ=60)
CCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATC < SRR4302535.2475668/94‑1 (MQ=60)
CAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCG < SRR4302535.2287839/94‑1 (MQ=60)
CAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCG < SRR4302535.3608825/94‑1 (MQ=60)
AGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGG < SRR4302535.3749043/94‑1 (MQ=60)
AGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGG > SRR4302535.3680157/1‑94 (MQ=60)
GGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACC < SRR4302535.3154698/94‑1 (MQ=60)
GCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCACACCA > SRR4302535.1120493/1‑94 (MQ=60)
GCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCA < SRR4302535.3964793/94‑1 (MQ=60)
CTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCAC < SRR4302535.574021/94‑1 (MQ=60)
TCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACA < SRR4302535.700583/94‑1 (MQ=60)
TCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAACGTCCATCGGCAAACCACA > SRR4302535.2393369/1‑94 (MQ=60)
CCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAG > SRR4302535.2901090/1‑94 (MQ=60)
CAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302535.4679605/94‑1 (MQ=60)
CAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302535.1483583/94‑1 (MQ=60)
CAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302535.674279/94‑1 (MQ=60)
GCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGC < SRR4302535.3325311/94‑1 (MQ=60)
CACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCG < SRR4302535.254423/94‑1 (MQ=60)
CCCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGG < SRR4302535.1328310/94‑1 (MQ=60)
ACGCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGG < SRR4302535.4195451/94‑1 (MQ=60)
CCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGG > SRR4302535.3478554/1‑94 (MQ=60)
CCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGG > SRR4302535.4571109/1‑94 (MQ=60)
CCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGC < SRR4302535.712811/94‑1 (MQ=60)
ccgacAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCA < SRR4302535.4455539/89‑1 (MQ=60)
CGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑CCCGC‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCA > SRR4302535.2974788/1‑94 (MQ=60)
CGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCA > SRR4302535.3649049/1‑94 (MQ=60)
ATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCG > SRR4302535.3708301/1‑94 (MQ=60)
ATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCG < SRR4302535.3357611/94‑1 (MQ=60)
TAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGT < SRR4302535.4076366/94‑1 (MQ=60)
AAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAANCCACAGCGCGGGCAGCACCNTT > SRR4302535.3334908/1‑94 (MQ=60)
AAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTT > SRR4302535.100294/1‑94 (MQ=60)
AAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTT < SRR4302535.3103918/94‑1 (MQ=60)
AATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTG > SRR4302535.4161319/1‑94 (MQ=60)
ATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGC > SRR4302535.4488454/1‑94 (MQ=60)
gcAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCA < SRR4302535.692260/92‑1 (MQ=60)
C‑AGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAC < SRR4302535.2922473/94‑1 (MQ=60)
CGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACC < SRR4302535.1368333/94‑1 (MQ=60)
AGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACC > SRR4302535.1584149/1‑94 (MQ=60)
AGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACC > SRR4302535.2873666/1‑94 (MQ=60)
CGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGC < SRR4302535.2723529/94‑1 (MQ=60)
CGGCCCCTACGGGTTATCGGTTCCGC‑‑‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGC < SRR4302535.692111/94‑1 (MQ=60)
GGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCG < SRR4302535.2497418/94‑1 (MQ=60)
GCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGT < SRR4302535.4302855/94‑1 (MQ=60)
CCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACA < SRR4302535.2898126/94‑1 (MQ=60)
CCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACA < SRR4302535.685507/94‑1 (MQ=60)
CGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAA > SRR4302535.4339576/1‑94 (MQ=60)
CGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAA > SRR4302535.227621/1‑94 (MQ=60)
CGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACACCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAC > SRR4302535.4241591/1‑94 (MQ=60)
ACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACT < SRR4302535.1782873/94‑1 (MQ=60)
CGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTT < SRR4302535.1755057/94‑1 (MQ=60)
GGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTC < SRR4302535.880890/94‑1 (MQ=60)
TTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGG < SRR4302535.2512372/94‑1 (MQ=60)
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CAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGACGGGTTATCGGT‑‑CGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGG > NC_000913/3554021‑3554198
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
