Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,554,113 |
Δ1 bp |
coding (372/396 nt) |
yhgKJ ← |
RNA phosphage cyclase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,554,113 | 0 | C | . | 99.6%
| 1120.0
/ ‑3.3
| 252 | coding (372/396 nt) | yhgKJ | RNA phosphage cyclase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base . (119/132); minor base A (0/1); total (119/133) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
Only 100 of 281 total aligned reads displayed.
TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑G‑AGGCGGCGCCGACGGGTTATCGGTCGCCG‑C‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC > NC_000913/3554026‑3554199
|
tGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑c < 1:3075529/93‑1 (MQ=255)
tGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGGTATCGGt‑gccg‑c > 2:3652426/1‑93 (MQ=255)
ggTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑cc > 1:5820635/1‑92 (MQ=255)
tttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGCAGGGTTATCGGt‑gccg‑ccgc > 1:2192139/1‑90 (MQ=255)
tttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccgc > 1:6415666/1‑90 (MQ=255)
tttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccgc < 1:5705079/93‑4 (MQ=255)
ttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccgct > 1:1552409/1‑89 (MQ=255)
ttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccgct > 2:6845863/1‑89 (MQ=255)
gCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCa < 1:3432080/93‑1 (MQ=255)
tgatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACt > 2:1355231/1‑93 (MQ=255)
gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACtt > 2:6657810/1‑93 (MQ=255)
gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACtt > 1:6977695/1‑93 (MQ=255)
atgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTc < 2:1098504/93‑1 (MQ=255)
aaTTCCTATGTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAac < 1:1914806/93‑1 (MQ=255)
aTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAaca < 1:206063/93‑1 (MQ=255)
ttCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAacac > 2:634146/1‑93 (MQ=255)
tCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACAcg > 1:2789640/1‑93 (MQ=255)
cTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACAcgcg > 1:4552477/1‑93 (MQ=255)
tATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGa > 1:2801326/1‑93 (MQ=255)
aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCAC‑AGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGaa < 2:6998001/93‑1 (MQ=255)
aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGaa < 2:5045316/93‑1 (MQ=255)
ttttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAg > 1:2501137/1‑93 (MQ=255)
ttttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAg < 1:4161315/93‑1 (MQ=255)
ttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGt < 1:1702058/93‑1 (MQ=255)
cGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTcc < 2:127929/93‑1 (MQ=255)
cGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTcc < 1:2173119/93‑1 (MQ=255)
cGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACATCAACACGCGAAGGTcc > 2:2177777/1‑93 (MQ=255)
gCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCa < 2:6712922/93‑1 (MQ=255)
ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCAt < 1:3660486/93‑1 (MQ=255)
ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCAt < 1:4455036/93‑1 (MQ=255)
ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCAt > 1:5988828/1‑93 (MQ=255)
ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCAt < 1:1784586/93‑1 (MQ=255)
cagcagCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATc < 2:2270083/93‑1 (MQ=255)
cagcagCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATc > 2:7620422/1‑93 (MQ=255)
cagcagCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATc > 1:5142002/1‑93 (MQ=255)
cagcagCGCCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATc < 2:3028899/93‑1 (MQ=255)
agcagcGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCg < 1:4442882/93‑1 (MQ=255)
gcagcGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCgg < 2:4040150/93‑1 (MQ=255)
cGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCaaa < 1:5214176/93‑1 (MQ=255)
cGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCaaa > 2:4185207/1‑93 (MQ=255)
cGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCaaa > 1:7930754/1‑93 (MQ=255)
gCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAAcc < 2:522844/93‑1 (MQ=255)
cTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACca < 2:392357/93‑1 (MQ=255)
tCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACcac > 2:1642190/1‑93 (MQ=255)
tCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACcac < 2:7495904/93‑1 (MQ=255)
tCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACcac > 1:1095504/1‑93 (MQ=255)
tCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCG‑CAGCTCACTTCAACACACGAAGGTCCATCGGCAcaccac > 2:2227861/1‑93 (MQ=255)
cAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAg > 2:3760894/1‑93 (MQ=255)
cAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAg < 2:4246956/93‑1 (MQ=255)
cAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAg < 2:778142/93‑1 (MQ=255)
cAGCACCCGGCGGATAAAACCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACAACAg > 1:2537186/1‑93 (MQ=255)
aGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgc < 1:679531/93‑1 (MQ=255)
gCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgcg > 2:3347426/1‑93 (MQ=255)
cACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgcgc < 2:5519168/93‑1 (MQ=255)
aCCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGcgcg > 1:6159226/1‑93 (MQ=255)
aCCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGcgcg < 2:3476468/93‑1 (MQ=255)
aCCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGcgcg > 2:3269450/1‑93 (MQ=255)
cccGGCGGATAAAATCC‑GCGGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCgg < 1:7498065/93‑1 (MQ=255)
cggcggATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgc > 1:7330571/1‑93 (MQ=255)
cggcggATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgc < 2:4483008/93‑1 (MQ=255)
ggcggATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgca > 1:894754/1‑93 (MQ=255)
ggcggATAAAATCC‑GCAGGCGGCGCCGACGGGGTATCGG‑AGCCGCC‑GCTCACTTCAACACGCGAAGCTCCATCGGCAAACCACAGCGCGAgca > 2:1985500/1‑93 (MQ=255)
ggATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcagcc > 2:5935142/1‑92 (MQ=255)
caacaaaaTCC‑GCAGGCGGCGCAGTCGCGTTACCGGT‑GCCGCC‑TCTCACTTAAACACGCGAGGGTCCATCGGCAATCCACAGCGCGGgcagca < 2:4913526/89‑1 (MQ=255)
gATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAc > 1:7816421/1‑93 (MQ=255)
gATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAc > 2:6155472/1‑93 (MQ=255)
aaaTCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGtt < 2:5780946/93‑1 (MQ=255)
aaaTCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATAGGCAGACCACAGCGCGGGCAGCACCGtt > 2:6913949/1‑93 (MQ=255)
aaaTCC‑GCAGGCGGCGCCGACGGGTTAACGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGtt < 2:4395044/93‑1 (MQ=255)
ccgcaGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTgca < 2:1251205/89‑1 (MQ=255)
ccgcaGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTgca < 2:274503/89‑1 (MQ=255)
ccgcaGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTgca < 2:2867518/89‑1 (MQ=255)
cgcaGGCGGCGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTgcag > 2:816429/4‑93 (MQ=255)
ggcggcGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAcc > 1:3954473/1‑93 (MQ=255)
ggcggcGCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGACCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAcc > 2:2345278/1‑93 (MQ=255)
gcccgcgcCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAcc < 1:3214744/89‑1 (MQ=255)
gcggcgCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCa < 1:4902714/93‑1 (MQ=255)
gcggcgCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCa < 1:5572046/93‑1 (MQ=255)
gcggcgCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCa < 2:1856904/93‑1 (MQ=255)
gggcgCGGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAACCCACAGCGCGGGCAGCACCGTTTGCAGCACCAg < 2:4768354/92‑1 (MQ=255)
cggcgCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAg < 1:7239525/93‑1 (MQ=255)
cggcgCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAg < 1:2340973/93‑1 (MQ=255)
cggcgCCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAg > 2:6216293/1‑93 (MQ=255)
gcgcCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCg > 2:3153078/1‑93 (MQ=255)
gcgcCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCg < 2:5650285/93‑1 (MQ=255)
gcCGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTa < 2:5373216/93‑1 (MQ=255)
ccGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTAc > 1:1012390/1‑93 (MQ=255)
cGACGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACa > 2:6732934/1‑93 (MQ=255)
aCGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAc > 1:3844993/1‑93 (MQ=255)
cGGGTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACt < 1:2631619/93‑1 (MQ=255)
ggTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTc < 1:181294/93‑1 (MQ=255)
gTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTcc < 2:7257889/93‑1 (MQ=255)
gTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTcc < 1:1304569/93‑1 (MQ=255)
gTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTcc < 1:4276555/93‑1 (MQ=255)
gTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTcc < 2:629414/93‑1 (MQ=255)
gTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTcc > 2:516989/1‑93 (MQ=255)
gTTATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGAACCGTTTGCAGCACCAGCGCACAACTTcc > 1:6378674/1‑93 (MQ=255)
tATCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCgg > 1:6952354/1‑93 (MQ=255)
aTCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGgc < 2:2713971/93‑1 (MQ=255)
aTCGGT‑GCCGCC‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGgc > 1:7847066/1‑93 (MQ=255)
|
TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑G‑AGGCGGCGCCGACGGGTTATCGGTCGCCG‑C‑GCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC > NC_000913/3554026‑3554199
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGACGGGTTATCGGT‑‑CGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCG > NC_000913/3554021‑3554200
|
CAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑G < SRR4302543.3954943/94‑1 (MQ=60)
GCGTGGTTTGGTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC < SRR4302543.1862700/94‑1 (MQ=60)
GCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC < SRR4302543.4848772/94‑1 (MQ=60)
GCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC < SRR4302543.3808534/94‑1 (MQ=60)
CGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCG > SRR4302543.6958436/1‑94 (MQ=60)
CGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCG < SRR4302543.346013/94‑1 (MQ=60)
GTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCG‑C > SRR4302543.1929760/1‑94 (MQ=60)
GTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCG‑C > SRR4302543.6356458/1‑94 (MQ=60)
TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCC < SRR4302543.4553641/94‑1 (MQ=60)
TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCC < SRR4302543.7874645/94‑1 (MQ=60)
TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCC > SRR4302543.5873564/1‑94 (MQ=60)
TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCC < SRR4302543.3103189/94‑1 (MQ=60)
GTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGCAGGGTTATCGGTGCCGCCG‑C > SRR4302543.2211827/1‑94 (MQ=60)
GTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCG‑C > SRR4302543.6476100/1‑94 (MQ=60)
GTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGCTATCGGTGCCGCCG‑C > SRR4302543.2211826/1‑94 (MQ=60)
TGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGTGTTATCGGT‑‑‑GCCGCCGCTCA < SRR4302543.7737628/94‑1 (MQ=60)
TGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCA < SRR4302543.6691047/94‑1 (MQ=60)
GCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCAC < SRR4302543.3462791/94‑1 (MQ=60)
CTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACT > SRR4302543.1322468/1‑94 (MQ=60)
TGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTT > SRR4302543.7043359/1‑94 (MQ=60)
TGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTT < SRR4302543.6322591/94‑1 (MQ=60)
AATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACA > SRR4302543.1203431/1‑94 (MQ=60)
AATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACA > SRR4302543.2621150/1‑94 (MQ=60)
AATTCCTATGTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACA < SRR4302543.1932066/94‑1 (MQ=60)
AATGCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACA < SRR4302543.3179669/94‑1 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAATTCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACAC < SRR4302543.1968318/94‑1 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACAC < SRR4302543.207809/94‑1 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACAC < SRR4302543.7020415/94‑1 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACAC > SRR4302543.6119219/1‑94 (MQ=60)
TTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACG > SRR4302543.2815106/1‑94 (MQ=60)
CCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCG > SRR4302543.4593933/1‑94 (MQ=60)
CCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCG > SRR4302543.4363733/1‑94 (MQ=60)
CTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGA > SRR4302543.2826942/1‑94 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACGCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAG < SRR4302543.4492233/94‑1 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAG > SRR4302543.2523836/1‑94 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAG < SRR4302543.4492234/94‑1 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAG > SRR4302543.2197576/1‑94 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAG > SRR4302543.1789474/1‑94 (MQ=60)
TTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGG < SRR4302543.4198979/94‑1 (MQ=60)
TTTTCCCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGG < SRR4302543.4241634/94‑1 (MQ=60)
TTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATGAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGT < SRR4302543.5926121/94‑1 (MQ=60)
TTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGT < SRR4302543.4319067/94‑1 (MQ=60)
TTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTC < SRR4302543.647005/94‑1 (MQ=60)
TTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTC < SRR4302543.1717309/94‑1 (MQ=60)
TCTCCAGCAGCGGCTCCAGTATCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCC < SRR4302543.7906176/94‑1 (MQ=60)
TCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCC < SRR4302543.4960199/94‑1 (MQ=60)
TCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCC < SRR4302543.2123502/94‑1 (MQ=60)
TCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCC < SRR4302543.3747568/94‑1 (MQ=60)
CGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCA < SRR4302543.2192587/94‑1 (MQ=60)
GCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAT > SRR4302543.7629055/1‑94 (MQ=60)
GCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAT < SRR4302543.3799420/94‑1 (MQ=60)
GCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAT > SRR4302543.6043712/1‑94 (MQ=60)
CCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATC < SRR4302543.1800541/94‑1 (MQ=60)
CCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATC < SRR4302543.4495388/94‑1 (MQ=60)
CCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATC > SRR4302543.5188482/1‑94 (MQ=60)
CCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATC < SRR4302543.3692631/94‑1 (MQ=60)
CAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCG < SRR4302543.5225210/94‑1 (MQ=60)
CAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCG < SRR4302543.7536126/94‑1 (MQ=60)
AGCAGCTGCTCCAGCACGCGGCGGATAAAAGCCGCAGGCGGCGCCGACGGGTTATCGGTGCGGCCT‑CG‑‑CACTTCAACACGCGAAGGTCCATCGG < SRR4302543.3293366/94‑1 (MQ=40)
AGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGG < SRR4302543.4483115/94‑1 (MQ=60)
GCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGC > SRR4302543.7042812/1‑94 (MQ=60)
GCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGC < SRR4302543.2419161/94‑1 (MQ=60)
CAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACTGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAAGACCATCGGCA > SRR4302543.5090130/1‑94 (MQ=60)
AGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAA < SRR4302543.610761/94‑1 (MQ=60)
GCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAA > SRR4302543.8005209/1‑94 (MQ=60)
CGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAC < SRR4302543.5261151/94‑1 (MQ=60)
GGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACC > SRR4302543.1292103/1‑94 (MQ=60)
GCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCA < SRR4302543.3642828/94‑1 (MQ=60)
CTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCAC > SRR4302543.4906734/1‑94 (MQ=60)
CTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCAC > SRR4302543.2531207/1‑94 (MQ=60)
CTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCAC > SRR4302543.1105360/1‑94 (MQ=60)
TCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACA < SRR4302543.4994513/94‑1 (MQ=60)
CCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAG < SRR4302543.935850/94‑1 (MQ=60)
CCAGCACCCGGCGGATAAAACCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACAACAG > SRR4302543.2560303/1‑94 (MQ=60)
CAGCGCCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302543.5789565/94‑1 (MQ=60)
CAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302543.4022787/94‑1 (MQ=60)
CAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302543.428319/94‑1 (MQ=60)
CAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302543.5925697/94‑1 (MQ=60)
CAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC > SRR4302543.6786598/1‑94 (MQ=60)
CAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302543.6799763/94‑1 (MQ=60)
CAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302543.1984801/94‑1 (MQ=60)
CAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302543.7968746/94‑1 (MQ=60)
AGCACCCGGCGGATAAAATCCNCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG < SRR4302543.1073366/94‑1 (MQ=60)
AGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG < SRR4302543.685784/94‑1 (MQ=60)
AGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG < SRR4302543.189322/94‑1 (MQ=60)
AGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG < SRR4302543.4048446/94‑1 (MQ=60)
GCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGC < SRR4302543.1676750/94‑1 (MQ=60)
CACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCCTCGGCAAACCACAGCGCG > SRR4302543.2823103/1‑94 (MQ=60)
CACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCG > SRR4302543.6217522/1‑94 (MQ=60)
CACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCG < SRR4302543.5331157/94‑1 (MQ=60)
CCCGGCGGATAAAATCCGCGGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGG < SRR4302543.7569773/94‑1 (MQ=60)
CCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGG < SRR4302543.5290399/94‑1 (MQ=60)
CCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGG > SRR4302543.3193059/1‑94 (MQ=60)
CCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGG > SRR4302543.1811593/1‑94 (MQ=60)
CCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGC > SRR4302543.7401124/1‑94 (MQ=60)
CGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCA > SRR4302543.4253021/1‑94 (MQ=60)
CGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCA > SRR4302543.902660/1‑94 (MQ=60)
GGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAG > SRR4302543.6859978/1‑94 (MQ=60)
CGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCA < SRR4302543.392961/94‑1 (MQ=60)
GGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAC > SRR4302543.2793969/1‑94 (MQ=60)
GGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAC > SRR4302543.7905977/1‑94 (MQ=60)
GGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAC > SRR4302543.7890074/1‑94 (MQ=60)
GGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAC < SRR4302543.2544178/94‑1 (MQ=60)
GGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAC > SRR4302543.2183290/1‑94 (MQ=60)
GGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAC > SRR4302543.4921921/1‑94 (MQ=60)
GATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACC < SRR4302543.3355060/94‑1 (MQ=60)
AAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTT > SRR4302543.7167637/1‑94 (MQ=60)
AATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTG < SRR4302543.3645148/94‑1 (MQ=60)
AATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTG > SRR4302543.2153203/1‑94 (MQ=60)
atccgcgGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGC < SRR4302543.6217247/87‑1 (MQ=60)
TCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCA < SRR4302543.2076598/94‑1 (MQ=60)
cgcAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCCCCGTTTGCAGC > SRR4302543.563583/4‑94 (MQ=60)
AGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACC > SRR4302543.6988011/1‑94 (MQ=60)
AGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACC < SRR4302543.7198549/94‑1 (MQ=60)
AGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACC > SRR4302543.3989469/1‑94 (MQ=60)
gcccGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCA < SRR4302543.3243776/90‑1 (MQ=60)
GGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCA > SRR4302543.7989525/1‑94 (MQ=60)
GCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAG < SRR4302543.4947404/94‑1 (MQ=60)
GCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAG < SRR4302543.5622752/94‑1 (MQ=60)
GCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAG < SRR4302543.2273178/94‑1 (MQ=60)
CGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGC < SRR4302543.2362209/94‑1 (MQ=60)
CGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGC < SRR4302543.3261142/94‑1 (MQ=60)
CGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGC < SRR4302543.7309603/94‑1 (MQ=60)
GGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCG > SRR4302543.5807094/1‑94 (MQ=60)
GCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTAC > SRR4302543.1021345/1‑94 (MQ=60)
GCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTAC < SRR4302543.3013010/94‑1 (MQ=60)
CCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACA < SRR4302543.7360657/94‑1 (MQ=60)
CCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAACGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACA > SRR4302543.2601096/1‑94 (MQ=60)
CGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACCGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAA > SRR4302543.2744143/1‑94 (MQ=60)
GACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAC > SRR4302543.85240/1‑94 (MQ=60)
GACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAC > SRR4302543.3878947/1‑94 (MQ=60)
GACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAC > SRR4302543.85241/1‑94 (MQ=60)
GCGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACT < SRR4302543.2496431/94‑1 (MQ=60)
CGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTT < SRR4302543.2655441/94‑1 (MQ=60)
GGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTC > SRR4302543.1609940/1‑94 (MQ=60)
GGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCC < SRR4302543.182836/94‑1 (MQ=60)
GGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGAACCGTTTGCAGCACCAGCGCACAACTTCC > SRR4302543.6438689/1‑94 (MQ=60)
GTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCG < SRR4302543.1316153/94‑1 (MQ=60)
GTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCG > SRR4302543.7387742/1‑94 (MQ=60)
GTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCG < SRR4302543.4315424/94‑1 (MQ=60)
TTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGG > SRR4302543.1728429/1‑94 (MQ=60)
TTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGG > SRR4302543.5243173/1‑94 (MQ=60)
TTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGG > SRR4302543.7017757/1‑94 (MQ=60)
TATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC > SRR4302543.7921022/1‑94 (MQ=60)
ATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCG > SRR4302543.6867680/1‑94 (MQ=60)
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CAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGACGGGTTATCGGT‑‑CGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCG > NC_000913/3554021‑3554200
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
