Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,567,293	A→G	L554L (TTA→CTA)	glgX ←	GlgX

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,567,293	0	A	G	97.5%	724.2 / 4.6	239	L554L (TTA→CTA)	glgX	GlgX
Reads supporting (aligned to +/- strand): ref base A (1/5); new base G (117/116); total (118/121)
Fisher's exact test for biased strand distribution p-value = 2.13e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01

Only 100 of 250 total aligned reads displayed.

ATATCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAACGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTATTGC  >  NC_000913/3567204‑3567382

 tatCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGcgcg                                                                                       >  1:3682150/1‑93 (MQ=255)

   tCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCgcggc                                                                                     <  1:2120744/93‑1 (MQ=255)

     gATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGcggcgg                                                                                   >  2:1104605/1‑93 (MQ=255)

      aTTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGt                                                                                  >  2:3109414/1‑93 (MQ=255)

      aTTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGt                                                                                  <  1:2099221/93‑1 (MQ=255)

      aTTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGAGCGGCGGt                                                                                  >  1:3524620/1‑93 (MQ=255)

        ttAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAACGCGGCGGTaa                                                                                <  1:159649/93‑1 (MQ=255)

         tAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTaaa                                                                               <  2:3871027/93‑1 (MQ=255)

         tAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTaaa                                                                               <  2:4565034/93‑1 (MQ=255)

          aGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGTGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAAt                                                                              <  2:4171637/93‑1 (MQ=255)

            ccAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGc                                                                            <  2:3345141/93‑1 (MQ=255)

            ccAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGc                                                                            >  2:3264032/1‑93 (MQ=255)

             cAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGCTTAGCGCGGCGGTAAATGCg                                                                           <  2:3762269/93‑1 (MQ=255)

             cAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAACTGCg                                                                           >  2:3466686/1‑93 (MQ=255)

             cAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCg                                                                           <  2:1541533/93‑1 (MQ=255)

              aaCGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCgg                                                                          >  2:197289/1‑93 (MQ=255)

              aaCGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCgg                                                                          >  2:290683/1‑93 (MQ=255)

               gcGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGt                                                                         <  2:4436224/92‑1 (MQ=255)

               aCGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGt                                                                         >  2:2362540/1‑93 (MQ=255)

               aCGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGt                                                                         <  1:3045947/93‑1 (MQ=255)

               aCGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGt                                                                         >  1:1639534/1‑93 (MQ=255)

                  gACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTaa                                                                      >  1:361097/1‑93 (MQ=255)

                   aCATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTaaa                                                                     <  1:1439213/93‑1 (MQ=255)

                    cATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAAc                                                                    >  1:1805683/1‑93 (MQ=255)

                    cATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAAc                                                                    >  2:2575684/1‑93 (MQ=255)

                     aTTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAAcc                                                                   <  2:2739824/93‑1 (MQ=255)

                        gCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAGGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACt                                                                <  1:4021815/93‑1 (MQ=255)

                        gCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACt                                                                <  2:4093487/93‑1 (MQ=255)

                        gCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAAACACt                                                                >  2:806935/1‑93 (MQ=255)

                         ccGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTg                                                               <  2:3727411/93‑1 (MQ=255)

                         ccGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTg                                                               <  1:104842/93‑1 (MQ=255)

                           gTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCt                                                             >  2:894422/1‑93 (MQ=255)

                           gTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCt                                                             >  2:1161429/1‑93 (MQ=255)

                           gTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCt                                                             >  1:2349826/1‑93 (MQ=255)

                           gTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCt                                                             >  1:2016902/1‑93 (MQ=255)

                              gCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGGAAATGCGGTTAAACCACTGCTTGc                                                          >  1:446438/1‑93 (MQ=255)

                               ccTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGcc                                                         >  1:3096676/1‑93 (MQ=255)

                                cttcttCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCt                                                        >  1:1032424/1‑93 (MQ=255)

                                 ttcttcCCACCAGCGATTCTCCACCAAATCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTg                                                       >  1:3323864/1‑93 (MQ=255)

                                 ctcttcCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTg                                                       <  2:3657604/92‑1 (MQ=255)

                                  tcttcCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGc                                                      >  1:3574789/1‑93 (MQ=255)

                                  tcttcCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGc                                                      >  2:3570955/1‑93 (MQ=255)

                                    ttcCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGa                                                    >  2:2454607/1‑93 (MQ=255)

                                    ttcCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGa                                                    >  1:3654574/1‑93 (MQ=255)

                                      cccACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGAcc                                                  <  1:1948973/93‑1 (MQ=255)

                                        caccaGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAg                                                <  1:23049/93‑1 (MQ=255)

                                        caccaGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAg                                                <  1:962962/93‑1 (MQ=255)

                                         cccaGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGt                                               <  2:3151656/92‑1 (MQ=255)

                                          ccaGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTc                                              >  1:2039579/1‑93 (MQ=255)

                                          ccaGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTc                                              >  1:4358069/1‑93 (MQ=255)

                                           caGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTcc                                             <  1:3211957/93‑1 (MQ=255)

                                           caGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAACGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTcc                                             <  1:3984312/93‑1 (MQ=255)

                                             gCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCaa                                           >  2:3820608/1‑93 (MQ=255)

                                              cGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAAc                                          <  1:778539/93‑1 (MQ=255)

                                               gATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAAca                                         >  2:1873748/1‑92 (MQ=255)

                                                aTTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCa                                        >  2:3539564/1‑93 (MQ=255)

                                                aTTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCa                                        <  1:4374382/93‑1 (MQ=255)

                                                  tctcCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAgg                                      <  1:4176094/93‑1 (MQ=255)

                                                  tctcCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAgg                                      <  2:2064905/93‑1 (MQ=255)

                                                    tcCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGtt                                    >  2:4080753/1‑93 (MQ=255)

                                                      caccaAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTaa                                  <  1:2481397/93‑1 (MQ=255)

                                                      caccaAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTaa                                  <  2:2191339/93‑1 (MQ=255)

                                                      caccaAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTaa                                  <  1:2259820/93‑1 (MQ=255)

                                                      caccaAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTaa                                  >  1:2200964/1‑93 (MQ=255)

                                                      caccaAAGCGGGAATGCGCTTGCGCAGATGGATTAACGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTaa                                  <  1:3837028/93‑1 (MQ=255)

                                                       accaAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAAt                                 >  1:474118/1‑93 (MQ=255)

                                                       accaAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAAt                                 <  1:3494320/93‑1 (MQ=255)

                                                        ccaAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAAtt                                <  2:2815203/93‑1 (MQ=255)

                                                          aaaGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTgg                              >  2:2229289/1‑93 (MQ=255)

                                                          aaaGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGCTAATTgg                              >  1:2759895/1‑93 (MQ=255)

                                                           aaGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGt                             <  2:1511568/93‑1 (MQ=255)

                                                           aaGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGt                             <  2:1609698/93‑1 (MQ=255)

                                                            aGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGtt                            >  2:1306461/1‑93 (MQ=255)

                                                             gCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTa                           <  2:3320830/93‑1 (MQ=255)

                                                             gCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTa                           <  2:4215927/93‑1 (MQ=255)

                                                               gggAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATc                         >  2:1444225/1‑93 (MQ=255)

                                                                ggAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATcc                        <  1:2816374/93‑1 (MQ=255)

                                                                ggAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATcc                        <  1:2889280/93‑1 (MQ=255)

                                                                ggAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATcc                        >  1:4494783/1‑93 (MQ=255)

                                                                ggAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATcc                        <  2:745290/93‑1 (MQ=255)

                                                                 gAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGTTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCt                       <  2:1065680/93‑1 (MQ=255)

                                                                   aTGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGa                     >  2:900044/1‑93 (MQ=255)

                                                                   aTGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGa                     <  2:1522355/93‑1 (MQ=255)

                                                                   aTGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGa                     <  1:4551477/93‑1 (MQ=255)

                                                                    tGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGAc                    <  2:3193644/93‑1 (MQ=255)

                                                                      cgcTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAg                  <  2:115269/93‑1 (MQ=255)

                                                                      cgcTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAg                  <  2:540931/93‑1 (MQ=255)

                                                                       gcTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAga                 >  1:1280814/1‑92 (MQ=255)

                                                                         ttGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAg               <  1:899282/93‑1 (MQ=255)

                                                                            cgcAGATGGATTAACGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCa            <  1:2532358/93‑1 (MQ=255)

                                                                             gcAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCAt           <  1:264682/93‑1 (MQ=255)

                                                                              cAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCAtt          <  2:298937/93‑1 (MQ=255)

                                                                              cAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCAtt          <  1:838875/93‑1 (MQ=255)

                                                                               aGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATACTGACAGTAGGCATTg         >  2:4638314/1‑93 (MQ=255)

                                                                                gATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGt        >  1:3420744/1‑93 (MQ=255)

                                                                                gATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGt        <  1:4114857/93‑1 (MQ=255)

                                                                                gATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGt        >  2:1702169/1‑93 (MQ=255)

                                                                                 aTGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGtt       >  2:1788715/1‑93 (MQ=255)

                                                                                   ggATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTAt     <  1:1489090/93‑1 (MQ=255)

                                                                                     aTTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTATTg   >  1:1353251/1‑93 (MQ=255)

ATATCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAACGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTATTGC  >  NC_000913/3567204‑3567382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAGCATATCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAACGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTATTGCCATG  >  NC_000913/3567200‑3567386

GAGCATATCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAG                                                                                               <  SRR4302535.1021657/94‑1 (MQ=60)

GAGCATATCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAG                                                                                               <  SRR4302535.2777254/94‑1 (MQ=60)

 AGCATATCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGC                                                                                              <  SRR4302535.1792914/94‑1 (MQ=60)

 AGCATATCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGC                                                                                              <  SRR4302535.3087543/94‑1 (MQ=60)

  GCATATCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCG                                                                                             <  SRR4302535.3109745/94‑1 (MQ=60)

    ATATCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCG                                                                                           >  SRR4302535.3707632/1‑94 (MQ=60)

    ATATCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCG                                                                                           >  SRR4302535.3266619/1‑94 (MQ=60)

     TATCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGC                                                                                          >  SRR4302535.4256339/1‑94 (MQ=60)

       TCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCG                                                                                        <  SRR4302535.449294/94‑1 (MQ=60)

       TCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCG                                                                                        >  SRR4302535.2900380/1‑94 (MQ=60)

       TCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCG                                                                                        <  SRR4302535.2136039/94‑1 (MQ=60)

        CGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGG                                                                                       >  SRR4302535.4397459/1‑94 (MQ=60)

         GATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGA                                                                                      >  SRR4302535.946579/1‑94 (MQ=60)

         GATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGAGCGGCGGT                                                                                      >  SRR4302535.3549098/1‑94 (MQ=60)

          ATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTA                                                                                     <  SRR4302535.2114362/94‑1 (MQ=60)

            TTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAA                                                                                   <  SRR4302535.3373261/94‑1 (MQ=60)

            TTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAA                                                                                   >  SRR4302535.998038/1‑94 (MQ=60)

            TTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAACGCGGCGGTAAA                                                                                   <  SRR4302535.160768/94‑1 (MQ=60)

             TAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAAT                                                                                  <  SRR4302535.4492051/94‑1 (MQ=60)

              AGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATG                                                                                 <  SRR4302535.4150959/94‑1 (MQ=60)

              AGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATG                                                                                 >  SRR4302535.4552842/1‑94 (MQ=60)

               GCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGC                                                                                >  SRR4302535.2218380/1‑94 (MQ=60)

                CCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCG                                                                               <  SRR4302535.2697449/94‑1 (MQ=60)

                CCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCG                                                                               >  SRR4302535.2312603/1‑94 (MQ=60)

                CCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCG                                                                               <  SRR4302535.1228061/94‑1 (MQ=60)

                 CAGCGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGG                                                                              <  SRR4302535.2518839/94‑1 (MQ=60)

                 CAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGG                                                                              <  SRR4302535.2195601/94‑1 (MQ=60)

                 CAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGG                                                                              <  SRR4302535.1420114/94‑1 (MQ=60)

                  AACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGT                                                                             >  SRR4302535.1651387/1‑94 (MQ=60)

                   ACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTT                                                                            <  SRR4302535.3067283/94‑1 (MQ=60)

                    CGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTA                                                                           <  SRR4302535.3614282/94‑1 (MQ=60)

                     GGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAA                                                                          >  SRR4302535.363592/1‑94 (MQ=60)

                       ACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAAC                                                                        >  SRR4302535.1818731/1‑94 (MQ=60)

                       ACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAAC                                                                        >  SRR4302535.1969944/1‑94 (MQ=60)

                       ACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAAC                                                                        >  SRR4302535.3117215/1‑94 (MQ=60)

                       ACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAAC                                                                        <  SRR4302535.1449500/94‑1 (MQ=60)

                            GCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAGGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTG                                                                   <  SRR4302535.4049335/94‑1 (MQ=60)

                            GCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTG                                                                   >  SRR4302535.1053471/1‑94 (MQ=60)

                            GCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTG                                                                   <  SRR4302535.2296309/94‑1 (MQ=60)

                             CCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGC                                                                  <  SRR4302535.105587/94‑1 (MQ=60)

                              CGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCT                                                                 >  SRR4302535.2366673/1‑94 (MQ=60)

                              CGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCT                                                                 >  SRR4302535.2031429/1‑94 (MQ=60)

                                 CGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGC                                                              >  SRR4302535.1640805/1‑94 (MQ=60)

                                 CGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGGAAATGCGGTTAAACCACTGCTTGC                                                              >  SRR4302535.449561/1‑94 (MQ=60)

                                  GCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCC                                                             >  SRR4302535.3118240/1‑94 (MQ=60)

                                  GCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCC                                                             >  SRR4302535.4267429/1‑94 (MQ=60)

                                   CCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCT                                                            <  SRR4302535.53391/94‑1 (MQ=60)

                                   CCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCT                                                            >  SRR4302535.1039760/1‑94 (MQ=60)

                                    CTTCTTCCCACCAGCGATTCTCCACCAAATCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTG                                                           >  SRR4302535.3346988/1‑94 (MQ=60)

                                    CTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTG                                                           <  SRR4302535.2627578/94‑1 (MQ=60)

                                     TTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGC                                                          >  SRR4302535.3599573/1‑94 (MQ=60)

                                      TCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCG                                                         >  SRR4302535.1755039/1‑94 (MQ=60)

                                       CTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGA                                                        >  SRR4302535.3679874/1‑94 (MQ=60)

                                       CTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGA                                                        >  SRR4302535.183984/1‑94 (MQ=60)

                                       CTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGA                                                        >  SRR4302535.3685384/1‑94 (MQ=60)

                                       CTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGA                                                        >  SRR4302535.3938219/1‑94 (MQ=60)

                                          CCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCA                                                     <  SRR4302535.3507948/94‑1 (MQ=60)

                                          CCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCA                                                     <  SRR4302535.1963002/94‑1 (MQ=60)

                                            CACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGT                                                   <  SRR4302535.969801/94‑1 (MQ=60)

                                            CACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGT                                                   <  SRR4302535.23229/94‑1 (MQ=60)

                                             CCCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTC                                                  <  SRR4302535.1515507/94‑1 (MQ=60)

                                             ACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTC                                                  >  SRR4302535.4387905/1‑94 (MQ=60)

                                             ACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTC                                                  >  SRR4302535.2054269/1‑94 (MQ=60)

                                              CCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCC                                                 <  SRR4302535.3838347/94‑1 (MQ=60)

                                               CAGCGATTCTCCACCAAAGCGGGAATGTGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCAGTTAAACCACTGCTTGCCTGCGACCAGTCCA                                                >  SRR4302535.2360822/1‑94 (MQ=60)

                                               CAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCA                                                <  SRR4302535.3234202/94‑1 (MQ=60)

                                               CAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCA                                                <  SRR4302535.2783024/94‑1 (MQ=60)

                                               CAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAACGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCA                                                <  SRR4302535.4011536/94‑1 (MQ=60)

                                                 GCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAAC                                              <  SRR4302535.3994857/94‑1 (MQ=60)

                                                  CGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACC                                             <  SRR4302535.784009/94‑1 (MQ=60)

                                                   GATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCA                                            <  SRR4302535.1156606/94‑1 (MQ=60)

                                                    ATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAG                                           <  SRR4302535.4404312/94‑1 (MQ=60)

                                                    ATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAG                                           >  SRR4302535.2188425/1‑94 (MQ=60)

                                                    ATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGGTAAACCACTGCTTGCCTGCGACCAGTCCAACCAG                                           >  SRR4302535.4016809/1‑94 (MQ=60)

                                                     TTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGG                                          <  SRR4302535.239135/94‑1 (MQ=60)

                                                     TTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAACGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGG                                          <  SRR4302535.3022328/94‑1 (MQ=60)

                                                      TCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGT                                         >  SRR4302535.1332934/1‑94 (MQ=60)

                                                      TCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGT                                         <  SRR4302535.4204679/94‑1 (MQ=60)

                                                       CTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTT                                        <  SRR4302535.3219222/94‑1 (MQ=60)

                                                        TCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTA                                       <  SRR4302535.1436326/94‑1 (MQ=60)

                                                        TCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTA                                       >  SRR4302535.3638383/1‑94 (MQ=60)

                                                         CCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAA                                      >  SRR4302535.2216653/1‑94 (MQ=60)

                                                         CCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAA                                      >  SRR4302535.4052300/1‑94 (MQ=60)

                                                          CACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAAT                                     >  SRR4302535.477439/1‑94 (MQ=60)

                                                          CACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAAT                                     <  SRR4302535.2499289/94‑1 (MQ=60)

                                                          CACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAAT                                     <  SRR4302535.2275910/94‑1 (MQ=60)

                                                          CACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAACGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAAT                                     <  SRR4302535.3863481/94‑1 (MQ=60)

                                                           ACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATT                                    <  SRR4302535.2064261/94‑1 (MQ=60)

                                                           ACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATT                                    >  SRR4302535.3618230/1‑94 (MQ=60)

                                                           ACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATT                                    <  SRR4302535.3518599/94‑1 (MQ=60)

                                                           ACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATT                                    >  SRR4302535.4131063/1‑94 (MQ=60)

                                                            CCAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTG                                   <  SRR4302535.3681150/94‑1 (MQ=60)

                                                             CAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGG                                  <  SRR4302535.4509998/94‑1 (MQ=60)

                                                             CAAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGCTAATTGG                                  >  SRR4302535.2779563/1‑94 (MQ=60)

                                                              AAAGCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGT                                 <  SRR4302535.3538627/94‑1 (MQ=60)

                                                                 GCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTAT                              <  SRR4302535.870724/94‑1 (MQ=60)

                                                                 GCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTAT                              <  SRR4302535.2076175/94‑1 (MQ=60)

                                                                 GCGGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTAT                              <  SRR4302535.4575072/94‑1 (MQ=60)

                                                                   GGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCC                            >  SRR4302535.4525636/1‑94 (MQ=60)

                                                                   GGGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCC                            >  SRR4302535.2616204/1‑94 (MQ=60)

                                                                    GGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCT                           <  SRR4302535.2909719/94‑1 (MQ=60)

                                                                    GGAATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCT                           <  SRR4302535.2836379/94‑1 (MQ=60)

                                                                       ATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGAC                        <  SRR4302535.4582582/94‑1 (MQ=60)

                                                                       ATGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGAC                        <  SRR4302535.2407077/94‑1 (MQ=60)

                                                                        TGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACA                       >  SRR4302535.3172187/1‑94 (MQ=60)

                                                                        TGCGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACA                       <  SRR4302535.173739/94‑1 (MQ=60)

                                                                          CGCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGA                     >  SRR4302535.1289956/1‑94 (MQ=60)

                                                                           GCTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTA                    >  SRR4302535.1972712/1‑94 (MQ=60)

                                                                            CTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAG                   >  SRR4302535.28276/1‑94 (MQ=60)

                                                                            CTTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAG                   <  SRR4302535.3544878/94‑1 (MQ=60)

                                                                             TTGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGG                  <  SRR4302535.905651/94‑1 (MQ=60)

                                                                              TGCGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGC                 <  SRR4302535.3585822/94‑1 (MQ=60)

                                                                                CGCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCAT               <  SRR4302535.1466934/94‑1 (MQ=60)

                                                                                CGCAGATGGATTAACGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCAT               <  SRR4302535.2550604/94‑1 (MQ=60)

                                                                                 GCAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATT              <  SRR4302535.266519/94‑1 (MQ=60)

                                                                                  CAGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTG             <  SRR4302535.844766/94‑1 (MQ=60)

                                                                                   AGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGT            >  SRR4302535.3444534/1‑94 (MQ=60)

                                                                                   AGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGT            >  SRR4302535.3058178/1‑94 (MQ=60)

                                                                                   AGATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCACTGT            >  SRR4302535.3342576/1‑94 (MQ=60)

                                                                                   AGATGGATTAGCGCGGCGGTAAATGCGATTAAACCACTGCTGGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGT            <  SRR4302535.4588001/94‑1 (MQ=60)

                                                                                    GATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTT           <  SRR4302535.4143024/94‑1 (MQ=60)

                                                                                    GATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTT           <  SRR4302535.3377922/94‑1 (MQ=60)

                                                                                    GATGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTT           <  SRR4302535.2038954/94‑1 (MQ=60)

                                                                                      TGGATTAGCGCGTCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTAT         <  SRR4302535.850901/94‑1 (MQ=60)

                                                                                      TGGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTAT         >  SRR4302535.1522244/1‑94 (MQ=60)

                                                                                       GGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTATT        <  SRR4302535.1499771/94‑1 (MQ=60)

                                                                                       GGATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTATT        <  SRR4302535.577480/94‑1 (MQ=60)

                                                                                        GATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTATTG       >  SRR4302535.1362935/1‑94 (MQ=60)

                                                                                        GATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTATTG       <  SRR4302535.2133921/94‑1 (MQ=60)

                                                                                         ATTAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTATTGC      <  SRR4302535.808973/94‑1 (MQ=60)

                                                                                           TAGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTATTGCCA    >  SRR4302535.2022095/1‑94 (MQ=60)

                                                                                            AGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTATTGCCAT   >  SRR4302535.2167119/1‑94 (MQ=60)

                                                                                            AGCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTATTGCCAT   >  SRR4302535.4132601/1‑94 (MQ=60)

                                                                                             GCGCGGCGGTAAATGCGGTTAAACCCCTGCTTGCCTGCGACCAGTCCAACCAGGTCAATTGGTTATCCTGACAGTAGGCATTGTTATTGCCATG  <  SRR4302535.4667036/94‑1 (MQ=60)

                                                                                             GCGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTATTGCCATG  <  SRR4302535.284252/94‑1 (MQ=60)

GAGCATATCGATTTAGCCAACGGACATTGCCGTCGCCTTCTTCCCACCAGCGATTCTCCACCAAAGCGGGAATGCGCTTGCGCAGATGGATTAACGCGGCGGTAAATGCGGTTAAACCACTGCTTGCCTGCGACCAGTCCAACCAGGTTAATTGGTTATCCTGACAGTAGGCATTGTTATTGCCATG  >  NC_000913/3567200‑3567386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`