Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,575,446 |
+G |
coding (912/942 nt) |
gntR ← |
GntR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,575,445 | 1 | . | G | 100.0%
| 596.5
/ NA
| 191 | C305R (TGC→CGC) | gntR | GntR |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (121/70); total (121/70) |
Only 100 of 217 total aligned reads displayed.
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC > NC_000913/3575353‑3575532
|
aTTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca < 1:421507/93‑1 (MQ=255)
tttGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑g > 1:2498378/1‑93 (MQ=255)
tttGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑g > 2:1544/1‑93 (MQ=255)
gtgGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑ggcg < 1:4633622/93‑4 (MQ=255)
ggCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTc > 2:4420150/1‑93 (MQ=255)
ggCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTc > 2:4029448/1‑93 (MQ=255)
gCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCa < 2:483727/93‑1 (MQ=255)
ttAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAgc > 2:2020233/1‑93 (MQ=255)
ttAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAgc < 1:786679/93‑1 (MQ=255)
tAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGCTTCGCCACGAATACGCGCCAGCAGGCGTTCAgcg > 1:3016901/1‑93 (MQ=255)
tAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAgcg > 2:909302/1‑93 (MQ=255)
aaaTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAgcgc > 2:2383154/1‑93 (MQ=255)
aaaTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTAAgcgc > 1:3707119/1‑93 (MQ=255)
aTAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCa > 1:4100487/1‑93 (MQ=255)
tAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCaa > 2:1179695/1‑93 (MQ=255)
tAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCaa > 1:2816642/1‑93 (MQ=255)
tAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCaa > 1:4412663/1‑93 (MQ=255)
gATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATa < 1:3993487/93‑1 (MQ=255)
aTCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATAc > 2:1479723/1‑93 (MQ=255)
gCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGcc > 1:620378/1‑93 (MQ=255)
gCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGcc > 2:1663037/1‑93 (MQ=255)
cccGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGccc > 2:3018408/1‑93 (MQ=255)
cccGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGccc > 2:3747357/1‑93 (MQ=255)
ccGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCa < 2:1035788/93‑1 (MQ=255)
cGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCAt > 1:505653/1‑93 (MQ=255)
gTGACAGGGTGAAACATAAATCTAACATTTACGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGGGTTCAGCGCCAATACTGCCCATcc < 2:2722496/93‑1 (MQ=255)
tGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATccc > 2:3473962/1‑92 (MQ=255)
cAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTc < 2:4349002/93‑1 (MQ=255)
aaGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCa < 2:1222146/93‑1 (MQ=255)
aGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAc > 1:2277581/1‑93 (MQ=255)
aGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAc > 1:3195623/1‑93 (MQ=255)
aGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAc > 1:1702173/1‑93 (MQ=255)
ggTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcg > 2:407120/1‑93 (MQ=255)
gTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcgc < 1:4005867/93‑1 (MQ=255)
tGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcgcg > 1:1313623/1‑93 (MQ=255)
tGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcgcg > 1:4077505/1‑93 (MQ=255)
tGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcgcg < 1:594498/93‑1 (MQ=255)
gAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcgg > 2:3503360/1‑93 (MQ=255)
aaCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcggcg > 2:659203/1‑93 (MQ=255)
cTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCa > 1:374851/1‑93 (MQ=255)
tAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAg > 2:4182350/1‑93 (MQ=255)
tAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAg > 1:815403/1‑93 (MQ=255)
tAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAg > 2:1505102/1‑93 (MQ=255)
tAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAg > 2:1872764/1‑93 (MQ=255)
aaaTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGc < 1:1556776/93‑1 (MQ=255)
aaTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCa > 1:3591839/1‑93 (MQ=255)
aaTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCa > 2:4276311/1‑93 (MQ=255)
tAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCt > 1:639406/1‑93 (MQ=255)
tAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCt > 1:2715126/1‑93 (MQ=255)
tAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCt < 1:2974743/93‑1 (MQ=255)
aaCATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTc > 1:2728837/1‑93 (MQ=255)
aTTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCa > 1:4659366/1‑93 (MQ=255)
ttttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCaa > 2:866093/1‑93 (MQ=255)
ttttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCaa < 1:386803/93‑1 (MQ=255)
ttttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCACaa > 1:3112226/1‑93 (MQ=255)
tttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAg > 1:1632052/1‑93 (MQ=255)
tttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAg > 2:4366412/1‑93 (MQ=255)
tttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAg < 1:3959850/93‑1 (MQ=255)
tttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAg < 2:3034048/93‑1 (MQ=255)
tCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTc > 1:2660302/1‑93 (MQ=255)
cGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCg > 2:2838374/1‑93 (MQ=255)
ggTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGt > 1:2841177/1‑93 (MQ=255)
ggTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGt > 2:2258438/1‑93 (MQ=255)
gtgtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg < 2:288983/93‑1 (MQ=255)
gtgtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg < 2:1742909/93‑1 (MQ=255)
gtgtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg > 2:3947649/1‑93 (MQ=255)
gtgtCACAGATTCGCCACCAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg < 1:1089980/93‑1 (MQ=255)
tgtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTgg < 1:2513440/93‑1 (MQ=255)
gtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGc < 2:2505416/93‑1 (MQ=255)
gtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGc < 1:4539494/93‑1 (MQ=255)
tCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCt > 1:3786309/1‑93 (MQ=255)
tCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCt > 1:3269356/1‑93 (MQ=255)
tCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCt > 1:4306299/1‑93 (MQ=255)
tCACAGATTCCCCACAAATCCGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCt < 2:2427450/93‑1 (MQ=255)
cacaGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGCCGTCAGCACGCTCGCAAGTCGTGGCtt < 2:3121449/93‑2 (MQ=255)
acaGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTcc > 2:576016/1‑93 (MQ=255)
acaGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTcc < 2:1081655/93‑1 (MQ=255)
aGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCAt > 2:1884936/1‑93 (MQ=255)
aGATGCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATGCTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCAt < 2:2669193/93‑1 (MQ=255)
gATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATc > 2:4532063/1‑93 (MQ=255)
gATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATc > 1:976678/1‑93 (MQ=255)
aTTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCa > 2:1259534/1‑93 (MQ=255)
aTTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCa < 1:105264/93‑1 (MQ=255)
tCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAcc < 2:3082209/93‑1 (MQ=255)
cGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCt < 2:464156/93‑1 (MQ=255)
ccACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGa < 2:3380558/93‑1 (MQ=255)
aCGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGAcc > 2:3357298/1‑93 (MQ=255)
gAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCaa > 1:3385132/1‑93 (MQ=255)
aaTACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAt > 1:2920558/1‑93 (MQ=255)
aaTACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAt > 2:2238438/1‑93 (MQ=255)
aaTACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGCGGCTCCATCACCTGACCAAt > 1:924077/1‑93 (MQ=255)
aTACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATg > 1:3902345/1‑93 (MQ=255)
aTACGCGCCAGCAGGCATTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCTCCTGACCAATg < 2:1613274/93‑1 (MQ=255)
aCGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTc > 2:4152469/1‑93 (MQ=255)
cgcgCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCa < 1:1860635/93‑1 (MQ=255)
cgcgCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCa < 1:2299142/93‑1 (MQ=255)
gcgcCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCAt < 1:674950/93‑1 (MQ=255)
gcgcCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCAt < 2:1433838/93‑1 (MQ=255)
gcgcCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCAt < 1:1900704/93‑1 (MQ=255)
ccAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAc < 2:246258/93‑1 (MQ=255)
|
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACC > NC_000913/3575353‑3575532
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAA > NC_000913/3575353‑3575538
|
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G < SRR4302535.424450/94‑1 (MQ=60)
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G > SRR4302535.2898879/1‑94 (MQ=60)
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G > SRR4302535.2517008/1‑94 (MQ=60)
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G > SRR4302535.2516401/1‑94 (MQ=60)
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G > SRR4302535.2978591/1‑94 (MQ=60)
TGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑Ggcg > SRR4302535.4299348/1‑91 (MQ=60)
GTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGT < SRR4302535.4665055/94‑1 (MQ=60)
GTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGT < SRR4302535.1784110/94‑1 (MQ=60)
TGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTT < SRR4302535.2759771/94‑1 (MQ=60)
TGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTT > SRR4302535.4239232/1‑94 (MQ=60)
GGGGCTTAAATAGATCCGCCCGGTTACAAGGTGAAACCTAAATCTAACATTTTCTGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTT < SRR4302535.1517917/94‑1 (MQ=60)
CTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGC > SRR4302535.921324/1‑94 (MQ=60)
CTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGC > SRR4302535.2171740/1‑94 (MQ=60)
TTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGCTTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCG > SRR4302535.3038038/1‑94 (MQ=60)
TTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCG < SRR4302535.792196/94‑1 (MQ=60)
TAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTAAGCGC > SRR4302535.3732786/1‑94 (MQ=60)
AATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCA > SRR4302535.2957102/1‑94 (MQ=60)
AATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCA > SRR4302535.4128564/1‑94 (MQ=60)
ATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAA > SRR4302535.4442863/1‑94 (MQ=60)
ATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAA > SRR4302535.2836649/1‑94 (MQ=60)
GATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATAC < SRR4302535.4020804/94‑1 (MQ=60)
ATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACT < SRR4302535.4381965/94‑1 (MQ=60)
ATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACT < SRR4302535.476238/94‑1 (MQ=60)
ATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACT > SRR4302535.3771830/1‑94 (MQ=60)
CGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCC > SRR4302535.624691/1‑94 (MQ=60)
GCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCC > SRR4302535.54534/1‑94 (MQ=60)
CCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCA < SRR4302535.4179364/94‑1 (MQ=60)
CCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCAT > SRR4302535.509187/1‑94 (MQ=60)
CGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATC > SRR4302535.412343/1‑94 (MQ=60)
GGTGACAAGGTGAAACCTAATTCTAACATTTGCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCC < SRR4302535.3137865/94‑1 (MQ=60)
GGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCC > SRR4302535.2569561/1‑94 (MQ=60)
GGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCC > SRR4302535.674585/1‑94 (MQ=60)
GTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCG < SRR4302535.4477222/94‑1 (MQ=60)
TGACAAGGTGAAACCTAAATCTAACATTTTCGGTGGCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGC > SRR4302535.4251617/1‑94 (MQ=60)
CAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCA > SRR4302535.616789/1‑94 (MQ=60)
AAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCAC > SRR4302535.1714478/1‑94 (MQ=60)
AAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCAC > SRR4302535.2293848/1‑94 (MQ=60)
AAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCAC > SRR4302535.3217738/1‑94 (MQ=60)
GTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCG > SRR4302535.4105405/1‑94 (MQ=60)
GTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCG < SRR4302535.4033270/94‑1 (MQ=60)
GTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCG > SRR4302535.1323012/1‑94 (MQ=60)
TGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGG > SRR4302535.632490/1‑94 (MQ=60)
TGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGG < SRR4302535.598666/94‑1 (MQ=60)
AAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCG < SRR4302535.802083/94‑1 (MQ=60)
AAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCG < SRR4302535.1791343/94‑1 (MQ=60)
AAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCG > SRR4302535.2312445/1‑94 (MQ=60)
AACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGT > SRR4302535.4666961/1‑94 (MQ=60)
ACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCCATACTGCCCATCCGCTCACGCGGCGTC > SRR4302535.4083326/1‑94 (MQ=60)
ACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTC < SRR4302535.3112407/94‑1 (MQ=60)
ACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTC < SRR4302535.1060416/94‑1 (MQ=60)
CCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCA > SRR4302535.377445/1‑94 (MQ=60)
CTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAG > SRR4302535.821120/1‑94 (MQ=60)
AAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCA < SRR4302535.1568000/94‑1 (MQ=60)
AAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCA > SRR4302535.3616751/1‑94 (MQ=60)
AATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAC > SRR4302535.2375919/1‑94 (MQ=60)
ATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACG < SRR4302535.4572617/94‑1 (MQ=60)
CTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCT > SRR4302535.2734522/1‑94 (MQ=60)
CTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCT > SRR4302535.643875/1‑94 (MQ=60)
CTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCT > SRR4302535.16762/1‑94 (MQ=60)
TAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTC > SRR4302535.2748321/1‑94 (MQ=60)
TAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTC < SRR4302535.2995621/94‑1 (MQ=60)
CATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCA > SRR4302535.4690882/1‑94 (MQ=60)
ATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAA > SRR4302535.3003579/1‑94 (MQ=60)
ATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCACAA > SRR4302535.3133892/1‑94 (MQ=60)
TTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAG < SRR4302535.3873769/94‑1 (MQ=60)
TTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAG < SRR4302535.389491/94‑1 (MQ=60)
TTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAG < SRR4302535.268340/94‑1 (MQ=60)
TTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAG > SRR4302535.1643846/1‑94 (MQ=60)
TTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGT < SRR4302535.2735271/94‑1 (MQ=60)
TTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGT < SRR4302535.3986892/94‑1 (MQ=60)
TTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTC > SRR4302535.2679358/1‑94 (MQ=60)
TCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCG > SRR4302535.3801069/1‑94 (MQ=60)
CGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGT > SRR4302535.2861329/1‑94 (MQ=60)
GTGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCATTACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGG < SRR4302535.1130008/94‑1 (MQ=60)
GTGTCACAGATTCGCCACCAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGG < SRR4302535.1097744/94‑1 (MQ=60)
TGTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGC < SRR4302535.2531562/94‑1 (MQ=60)
GTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCCGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCT < SRR4302535.539318/94‑1 (MQ=60)
GTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCT < SRR4302535.4570544/94‑1 (MQ=60)
GTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCT < SRR4302535.4023572/94‑1 (MQ=60)
GTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCT > SRR4302535.4335762/1‑94 (MQ=60)
GTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCT > SRR4302535.3812427/1‑94 (MQ=60)
GTCACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCT > SRR4302535.3292067/1‑94 (MQ=60)
CACAGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCC > SRR4302535.2652374/1‑94 (MQ=60)
AGATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATC > SRR4302535.983609/1‑94 (MQ=60)
GATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCA > SRR4302535.3969895/1‑94 (MQ=60)
GATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCA < SRR4302535.1470386/94‑1 (MQ=60)
ATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAC < SRR4302535.106011/94‑1 (MQ=60)
ATTCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAC > SRR4302535.914824/1‑94 (MQ=60)
TCGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCT < SRR4302535.3470723/94‑1 (MQ=60)
CGCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTG < SRR4302535.791658/94‑1 (MQ=60)
GCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGA > SRR4302535.3347887/1‑94 (MQ=60)
GCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGA > SRR4302535.3284453/1‑94 (MQ=60)
GCCACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGA < SRR4302535.1901021/94‑1 (MQ=60)
CACGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACC > SRR4302535.3918196/1‑94 (MQ=60)
CACGAATACGCGCCAGCA‑GTCGTTCAGCGCCAATACTGACCATCCGCTCACGCGGCGTCAGCACGCTCGCCAGTCGTGGCTCGATCACCTGACC > SRR4302535.2422940/1‑94 (MQ=60)
CGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAA > SRR4302535.3676348/1‑94 (MQ=60)
CGAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAA > SRR4302535.3408686/1‑94 (MQ=60)
GAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAT > SRR4302535.1583890/1‑94 (MQ=60)
GAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAAT > SRR4302535.2941162/1‑94 (MQ=60)
GAATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGCGGCTCCATCACCTGACCAAT > SRR4302535.930622/1‑94 (MQ=60)
AATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATG > SRR4302535.393271/1‑94 (MQ=60)
AATACGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATG > SRR4302535.3929079/1‑94 (MQ=60)
CGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCAT < SRR4302535.2315590/94‑1 (MQ=60)
CGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCAT < SRR4302535.952138/94‑1 (MQ=60)
CGCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCAT < SRR4302535.1874050/94‑1 (MQ=60)
GCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATG < SRR4302535.1914382/94‑1 (MQ=60)
GCGCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATG < SRR4302535.679668/94‑1 (MQ=60)
GCCAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGAC < SRR4302535.347200/94‑1 (MQ=60)
CAGCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCG < SRR4302535.4009801/94‑1 (MQ=60)
GCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTG < SRR4302535.1292140/94‑1 (MQ=60)
GCAGG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTG < SRR4302535.2596816/94‑1 (MQ=60)
cagG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGG < SRR4302535.2966746/91‑1 (MQ=60)
agG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGA > SRR4302535.1847903/3‑94 (MQ=60)
agG‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGA < SRR4302535.2489345/92‑1 (MQ=60)
G‑G‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAA < SRR4302535.4553516/94‑1 (MQ=60)
|
ATTTGTGGGCTTAAATAGATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑G‑CGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACCTGACCAATGTCATGACCGTGGAA > NC_000913/3575353‑3575538
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
