Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,579,597 |
A→G |
H35R (CAT→CGT) |
yhhZ → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,579,597 | 0 | A | G | 99.2%
| 412.6
/ ‑4.6
| 132 | H35R (CAT→CGT) | yhhZ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (42/89); total (42/90) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.34e-01 |
Only 100 of 132 total aligned reads displayed.
TTTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAAT > NC_000913/3579507‑3579686
|
tttACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTg > 2:1155540/1‑93 (MQ=255)
ttACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGa < 1:2413748/93‑1 (MQ=255)
ttACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGa < 1:2187448/93‑1 (MQ=255)
tACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAg < 1:2984229/93‑1 (MQ=255)
ccTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGa < 1:4182738/93‑1 (MQ=255)
cTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGAt > 1:161888/1‑93 (MQ=255)
cTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGAt > 1:5126198/1‑93 (MQ=255)
tGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATg < 2:7672214/93‑1 (MQ=255)
tGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATg > 2:599233/1‑93 (MQ=255)
tGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATg < 1:351685/93‑1 (MQ=255)
tGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATg > 1:3907147/1‑93 (MQ=255)
aCAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGaa < 1:2368308/93‑1 (MQ=255)
cAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGaaa < 1:709377/93‑1 (MQ=255)
gTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAata > 2:4611504/1‑93 (MQ=255)
gTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAata > 2:4611502/1‑93 (MQ=255)
cGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTa < 1:6207152/93‑1 (MQ=255)
ggAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACa < 1:2231553/93‑1 (MQ=255)
gagaACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACAt > 2:1131437/1‑93 (MQ=255)
gaACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATtc < 2:4304745/93‑1 (MQ=255)
gaACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATtc < 2:4304746/93‑1 (MQ=255)
aacaacAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATtct > 1:5973946/1‑93 (MQ=255)
caacaaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCa < 1:6117969/93‑1 (MQ=255)
aacaaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCAc < 1:7769216/93‑1 (MQ=255)
aacaaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCAc > 2:4561856/1‑93 (MQ=255)
acaaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCAct > 2:3810285/1‑93 (MQ=255)
aaGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCActct < 2:7402170/93‑1 (MQ=255)
aaGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTaaa < 1:348391/93‑1 (MQ=255)
aaGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTaaa < 2:2472662/93‑1 (MQ=255)
aGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaat < 2:7769466/93‑1 (MQ=255)
aGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaat > 2:6581747/1‑93 (MQ=255)
aGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaat < 2:6356488/93‑1 (MQ=255)
gCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaata > 2:224688/1‑93 (MQ=255)
gCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaata > 1:7466796/1‑93 (MQ=255)
gCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaata < 2:1589444/93‑1 (MQ=255)
gCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaata > 2:4227166/1‑93 (MQ=255)
gCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaata < 1:6471568/93‑1 (MQ=255)
gCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaata < 2:2960686/93‑1 (MQ=255)
gCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaata > 1:3255666/1‑93 (MQ=255)
gCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaata < 2:3230576/93‑1 (MQ=255)
aTCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaataat < 2:2012405/93‑1 (MQ=255)
aTCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAaataat < 1:4084510/93‑1 (MQ=255)
tctcCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAataata > 2:6657486/1‑93 (MQ=255)
tcCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATAtt < 2:5349224/93‑1 (MQ=255)
tcCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATAtt < 1:4418101/93‑1 (MQ=255)
ccGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATta > 1:6628300/1‑93 (MQ=255)
ccGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATta < 1:7393438/93‑1 (MQ=255)
cGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATtaa > 2:3138844/1‑93 (MQ=255)
cGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATtaa < 1:6703439/93‑1 (MQ=255)
cGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATtaa < 1:5586368/93‑1 (MQ=255)
gCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATtaat < 1:1181953/93‑1 (MQ=255)
cAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATtaata < 1:5049429/93‑1 (MQ=255)
cAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATtaata > 2:4575964/1‑93 (MQ=255)
gTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAataata > 2:4871644/1‑93 (MQ=255)
ttGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATAc < 1:4863762/93‑1 (MQ=255)
gtgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACgg < 1:7858822/93‑1 (MQ=255)
tgGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACggg > 2:4011306/1‑93 (MQ=255)
gggACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACgggg < 2:5474466/93‑1 (MQ=255)
gACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCt < 2:1726818/93‑1 (MQ=255)
aCTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCtt < 2:505604/93‑1 (MQ=255)
cTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATACTATTAATAATACGGGGCTTGGtt > 2:5413209/1‑93 (MQ=255)
tGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTc > 1:3003809/1‑93 (MQ=255)
gTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTcact > 1:6737336/1‑92 (MQ=255)
tCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAg < 2:7002016/93‑1 (MQ=255)
tACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGtt > 2:3611207/1‑93 (MQ=255)
aCAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTc < 2:2061596/93‑1 (MQ=255)
cAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTcc < 1:504516/93‑1 (MQ=255)
cAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTcc > 1:7258235/1‑93 (MQ=255)
cAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTcc < 2:857885/93‑1 (MQ=255)
aGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGc < 2:7058910/77‑1 (MQ=255)
aGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGc > 1:7058911/1‑77 (MQ=255)
aGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCa < 2:2736974/93‑1 (MQ=255)
aGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCa < 1:2377235/93‑1 (MQ=255)
ggTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAt < 2:2995199/93‑1 (MQ=255)
ggTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAt < 2:7583563/93‑1 (MQ=255)
ggTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAt < 1:6403098/93‑1 (MQ=255)
ggTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAt < 2:1503006/93‑1 (MQ=255)
gTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATg < 1:1220606/93‑1 (MQ=255)
gTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATg < 2:7602260/93‑1 (MQ=255)
gTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATg < 2:4444438/93‑1 (MQ=255)
gTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATg < 1:1220607/93‑1 (MQ=255)
gTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATg < 1:1697467/93‑1 (MQ=255)
tAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATgg < 2:2139837/93‑1 (MQ=255)
aTCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGta < 2:5560869/93‑1 (MQ=255)
tCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGtat < 1:975065/93‑1 (MQ=255)
cGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGtata < 2:6751375/93‑1 (MQ=255)
cGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGtata < 1:7168110/93‑1 (MQ=255)
gTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATaa > 1:6534640/1‑93 (MQ=255)
gTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATaa < 1:4366848/93‑1 (MQ=255)
gTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATaa < 1:5646951/93‑1 (MQ=255)
ttGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAAc < 1:243691/93‑1 (MQ=255)
ttGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAAc < 1:3737818/93‑1 (MQ=255)
ggCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACAt < 1:501607/93‑1 (MQ=255)
gCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACAtt > 1:1857753/1‑93 (MQ=255)
gCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACAtt < 1:3956055/93‑1 (MQ=255)
cAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACAttt < 2:6986293/93‑1 (MQ=255)
cAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACAttt < 1:6355876/93‑1 (MQ=255)
gagCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTg > 2:6954003/1‑93 (MQ=255)
gCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTa < 1:6979789/93‑1 (MQ=255)
gCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTa < 1:6390641/93‑1 (MQ=255)
gCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTa < 1:1155540/93‑1 (MQ=255)
|
TTTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAAT > NC_000913/3579507‑3579686
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGTTTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAAT > NC_000913/3579505‑3579690
|
TGTTTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGT > SRR4302543.652978/1‑94 (MQ=60)
TGTTTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGT > SRR4302543.4139818/1‑94 (MQ=60)
GTTTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTG < SRR4302543.3387650/94‑1 (MQ=60)
TTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAG < SRR4302543.2435555/94‑1 (MQ=60)
TTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAG < SRR4302543.2207070/94‑1 (MQ=60)
TACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGG < SRR4302543.3011328/94‑1 (MQ=60)
CCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGAT < SRR4302543.4220642/94‑1 (MQ=60)
CCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGAT > SRR4302543.5172539/1‑94 (MQ=60)
CCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGAT > SRR4302543.163283/1‑94 (MQ=60)
CTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATG > SRR4302543.3941635/1‑94 (MQ=60)
TGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGA < SRR4302543.354936/94‑1 (MQ=60)
TGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGA > SRR4302543.5096531/1‑94 (MQ=60)
ACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAA < SRR4302543.2389778/94‑1 (MQ=60)
CAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAAT < SRR4302543.715822/94‑1 (MQ=60)
AGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATA > SRR4302543.7121139/1‑94 (MQ=60)
ACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTA < SRR4302543.3344889/94‑1 (MQ=60)
CGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTAC < SRR4302543.6265760/94‑1 (MQ=60)
GGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACAT < SRR4302543.2251725/94‑1 (MQ=60)
GAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCT > SRR4302543.6028666/1‑94 (MQ=60)
GAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCT < SRR4302543.2592159/94‑1 (MQ=60)
GAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCT < SRR4302543.3940980/94‑1 (MQ=60)
CAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCAC < SRR4302543.6175920/94‑1 (MQ=60)
AACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACT < SRR4302543.7842515/94‑1 (MQ=60)
AAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAAT < SRR4302543.4807506/94‑1 (MQ=60)
AAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAAT < SRR4302543.351611/94‑1 (MQ=60)
AAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAAT < SRR4302543.2397904/94‑1 (MQ=60)
AGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATA > SRR4302543.3285103/1‑94 (MQ=60)
AGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATA > SRR4302543.7538312/1‑94 (MQ=60)
GCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAA < SRR4302543.6532538/94‑1 (MQ=60)
ATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATA < SRR4302543.4121127/94‑1 (MQ=60)
TCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTA > SRR4302543.6690820/1‑94 (MQ=60)
TCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTA < SRR4302543.4458146/94‑1 (MQ=60)
CCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAA < SRR4302543.7464449/94‑1 (MQ=60)
CGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAAT < SRR4302543.5637255/94‑1 (MQ=60)
CGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAAT < SRR4302543.6766710/94‑1 (MQ=60)
GCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATA < SRR4302543.1192637/94‑1 (MQ=60)
CAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAA < SRR4302543.5095341/94‑1 (MQ=60)
TTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACG < SRR4302543.4908099/94‑1 (MQ=60)
TTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACG < SRR4302543.4207667/94‑1 (MQ=60)
GTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGG < SRR4302543.7290367/94‑1 (MQ=60)
GTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGG < SRR4302543.7932852/94‑1 (MQ=60)
GGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGC < SRR4302543.6760395/94‑1 (MQ=60)
CTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTC > SRR4302543.3031034/1‑94 (MQ=60)
AGTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACT > SRR4302543.6800969/1‑94 (MQ=60)
GTCTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAG < SRR4302543.7737592/94‑1 (MQ=60)
CTACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTT > SRR4302543.6493976/1‑94 (MQ=60)
ACAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCC > SRR4302543.7328388/1‑94 (MQ=60)
CAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTagagtggagatcgga > SRR4302543.7127416/1‑79 (MQ=60)
CAGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCA < SRR4302543.509204/94‑1 (MQ=60)
AGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAT < SRR4302543.2398768/94‑1 (MQ=60)
AGGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCAT > SRR4302543.5756958/1‑94 (MQ=60)
GGTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATG < SRR4302543.6463387/94‑1 (MQ=60)
GTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGG < SRR4302543.1712686/94‑1 (MQ=60)
GTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGG < SRR4302543.1231578/94‑1 (MQ=60)
GTAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGG < SRR4302543.1231577/94‑1 (MQ=60)
TAATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGT < SRR4302543.1408673/94‑1 (MQ=60)
ATCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTAT < SRR4302543.1993441/94‑1 (MQ=60)
TCGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATA < SRR4302543.983654/94‑1 (MQ=60)
CGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAA > SRR4302543.6596156/1‑94 (MQ=60)
CGTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAA < SRR4302543.7237726/94‑1 (MQ=60)
GTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAAC < SRR4302543.5698434/94‑1 (MQ=60)
GTTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAAC < SRR4302543.4406407/94‑1 (MQ=60)
TTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACA < SRR4302543.3770700/94‑1 (MQ=60)
TTGGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACA < SRR4302543.245801/94‑1 (MQ=60)
GGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATT < SRR4302543.506257/94‑1 (MQ=60)
GGCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATT > SRR4302543.1874450/1‑94 (MQ=60)
GCAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTT < SRR4302543.3991066/94‑1 (MQ=60)
CAGAGCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTT < SRR4302543.6415639/94‑1 (MQ=60)
GCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAA < SRR4302543.6450795/94‑1 (MQ=60)
GCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAA < SRR4302543.7045477/94‑1 (MQ=60)
GCGGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAA < SRR4302543.1166056/94‑1 (MQ=60)
GGGCGTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAAT < SRR4302543.6345562/94‑1 (MQ=60)
GTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAAT > SRR4302543.4221758/1‑94 (MQ=60)
GTGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAAT > SRR4302543.7988346/1‑94 (MQ=60)
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TGTTTACCTGACAGTAACGGGAGAACAACAAGGAAGCATCTCCGCAGGTTGTGGGACTTCTGAGTCTACAGGTAATCGTTGGCAGAGCGGGCATGAGGATGAAATATTTACATTCTCACTCTTAAATAATATTAATAATACGGGGCTTGGTTCACAGTTCCATGGTATAACATTTTGTAAATTAAT > NC_000913/3579505‑3579690
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
