Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,588,897	A→G	Y354H (TAT→CAT)	ugpB ←	UgpB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,588,897	0	A	G	100.0%	761.7 / NA	238	Y354H (TAT→CAT)	ugpB	UgpB
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (112/126); total (112/126)

Only 100 of 246 total aligned reads displayed.

CGGCAACGGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATACGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTCGCCA  >  NC_000913/3588808‑3588986

cggcaacggcGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATgcgc                                                                                        <  1:4012005/93‑1 (MQ=255)

cggcaacggcGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATgcgc                                                                                        >  2:1421385/1‑93 (MQ=255)

 ggcaacggcGGCTTATTCAGGATCCTACGCGTCACGGTGTCCGGCCCTGGGTCTTTCTCACAAAAGACCTGCTCACGCGTCGGGACATGCgct                                                                                       >  2:658558/1‑93 (MQ=255)

  gcaacggcGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCgctg                                                                                      <  2:2147918/93‑1 (MQ=255)

   caacggcGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCgctgc                                                                                     <  1:3585194/93‑1 (MQ=255)

   caacggcGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCgctgc                                                                                     >  2:2688302/1‑93 (MQ=255)

    aacggcGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCgctgct                                                                                    >  1:1006266/1‑93 (MQ=255)

    aacggcGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCgctgct                                                                                    >  2:1333112/1‑93 (MQ=255)

     acggcGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCtt                                                                                   >  1:1898720/1‑93 (MQ=255)

       ggcggcTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTg                                                                                 <  2:1129336/93‑1 (MQ=255)

        gcggcTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTgg                                                                                >  1:3626341/1‑93 (MQ=255)

         cggcTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGt                                                                               <  1:3929786/93‑1 (MQ=255)

           gcTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGa                                                                             <  2:4533283/93‑1 (MQ=255)

            cTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGAt                                                                            <  2:3497821/93‑1 (MQ=255)

            cTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGAt                                                                            >  1:2185085/1‑93 (MQ=255)

            cTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGAt                                                                            <  2:1566074/93‑1 (MQ=255)

              tATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTg                                                                          <  2:2638898/93‑1 (MQ=255)

               aTTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGATTTGGTGATTgg                                                                         <  2:4030293/93‑1 (MQ=255)

                ttCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGc                                                                        <  1:698508/93‑1 (MQ=255)

                ttCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGc                                                                        >  1:3360984/1‑93 (MQ=255)

                 tCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCa                                                                       >  2:723215/1‑93 (MQ=255)

                 tCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCa                                                                       <  1:3758453/93‑1 (MQ=255)

                  cAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAg                                                                      >  1:4157339/1‑93 (MQ=255)

                   aGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGa                                                                     >  1:163487/1‑93 (MQ=255)

                    gCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGAt                                                                    <  1:3805324/93‑1 (MQ=255)

                     cATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATa                                                                   <  1:2077603/93‑1 (MQ=255)

                      aTCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATaa                                                                  >  2:2035171/1‑93 (MQ=255)

                       tCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAAc                                                                 >  2:2292230/1‑93 (MQ=255)

                       tCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAAc                                                                 <  1:4678333/93‑1 (MQ=255)

                       tCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAAc                                                                 >  2:1974547/1‑93 (MQ=255)

                       tCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAAc                                                                 >  1:3176055/1‑93 (MQ=255)

                        cTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAAcc                                                                <  1:4331977/93‑1 (MQ=255)

                             gcgTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGttt                                                           >  1:1524448/1‑93 (MQ=255)

                              cgTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGtttt                                                          <  2:3247016/93‑1 (MQ=255)

                               gTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTc                                                         <  1:2301679/93‑1 (MQ=255)

                               gTCGCGGTAGCCGCCCCTGGGTTTTTCGCATAAAAGCCCTGCTCACGGGTCAGGGCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTc                                                         <  2:3742447/93‑1 (MQ=255)

                                tCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCt                                                        >  2:2956625/1‑93 (MQ=255)

                                 cgcgGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTg                                                       <  1:4310427/93‑1 (MQ=255)

                                  gcgGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGa                                                      >  2:4128133/1‑93 (MQ=255)

                                  gcgGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGa                                                      >  2:1577169/1‑93 (MQ=255)

                                  gcgGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGa                                                      >  2:3986194/1‑93 (MQ=255)

                                   cgGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGAt                                                     <  1:434971/93‑1 (MQ=255)

                                   cgGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGAt                                                     <  1:943683/93‑1 (MQ=255)

                                     gTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGc                                                   >  1:1681143/1‑93 (MQ=255)

                                      tATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGcc                                                  >  2:3912752/1‑93 (MQ=255)

                                       aTCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCa                                                 <  2:1782920/93‑1 (MQ=255)

                                        tcctccCCTGGGTGTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCAc                                                <  1:1450557/93‑1 (MQ=255)

                                         ccGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACt                                               >  2:1872239/1‑93 (MQ=255)

                                          cGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTc                                              <  2:2057906/93‑1 (MQ=255)

                                             cccTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGc                                           >  1:278363/1‑93 (MQ=255)

                                              ccTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCa                                          >  2:1239347/1‑93 (MQ=255)

                                              ccTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCa                                          >  2:3037058/1‑93 (MQ=255)

                                              ccTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCa                                          >  1:2939841/1‑93 (MQ=255)

                                                   gTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTTGTGATTGGCAGATAACCGGTTTTCTGATGCAACTAGGCAGCGtt                                     >  1:4084288/1‑93 (MQ=255)

                                                   gTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCGCTCGGCAGCGtt                                     <  2:1533627/93‑1 (MQ=255)

                                                   gTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGtt                                     <  2:3846063/93‑1 (MQ=255)

                                                   gTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGtt                                     >  2:8510/1‑93 (MQ=255)

                                                    tttttCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGttt                                    >  1:2878837/1‑93 (MQ=255)

                                                     ttttCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGATTTCTGATGCCACTCGGCAGCGtttt                                   >  1:805297/1‑93 (MQ=255)

                                                      tttCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTc                                  <  2:3819735/93‑1 (MQ=255)

                                                      tttCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTc                                  >  1:256167/1‑93 (MQ=255)

                                                      tttCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTc                                  <  1:3006129/93‑1 (MQ=255)

                                                       ttCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCt                                 <  2:3942425/93‑1 (MQ=255)

                                                        tctcATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTg                                <  2:1603265/93‑1 (MQ=255)

                                                        tctcATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTg                                <  1:2586145/93‑1 (MQ=255)

                                                          tcATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGc                              >  2:2423992/1‑93 (MQ=255)

                                                            aTAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCtt                            >  1:4626117/1‑93 (MQ=255)

                                                             tAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTc                           >  2:1709427/1‑93 (MQ=255)

                                                             tAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTc                           >  2:2494592/1‑93 (MQ=255)

                                                              aaaaGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTcg                          <  1:90452/93‑1 (MQ=255)

                                                               aaaGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTcgc                         >  2:8880/1‑93 (MQ=255)

                                                               aaaGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTcgc                         <  2:2519203/93‑1 (MQ=255)

                                                               aaaGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTcgc                         >  2:2247633/1‑93 (MQ=255)

                                                               aaaGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTcgc                         >  1:2415804/1‑93 (MQ=255)

                                                                  gCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAg                      <  1:77012/93‑1 (MQ=255)

                                                                   cccTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAgg                     <  2:3511088/93‑1 (MQ=255)

                                                                      tGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGaaa                  >  1:3090056/1‑93 (MQ=255)

                                                                      tGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGaaa                  >  1:3352737/1‑93 (MQ=255)

                                                                      tGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGaaa                  >  2:481078/1‑93 (MQ=255)

                                                                      tGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGaaa                  <  1:1425101/93‑1 (MQ=255)

                                                                       gCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAAt                 <  2:3336618/93‑1 (MQ=255)

                                                                       gCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAAt                 <  2:424571/93‑1 (MQ=255)

                                                                       gCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAAt                 <  2:2233249/93‑1 (MQ=255)

                                                                        gtCACGGGTCAGCTCATGCGCTGCTTCGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATc                <  1:372337/92‑1 (MQ=255)

                                                                        cTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATc                <  1:1346525/93‑1 (MQ=255)

                                                                         tCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCg               >  1:16132/1‑93 (MQ=255)

                                                                          cACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGa              <  2:3661535/93‑1 (MQ=255)

                                                                          cACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGa              <  2:2576489/93‑1 (MQ=255)

                                                                           aCGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAg             <  1:1325608/93‑1 (MQ=255)

                                                                           aCGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAg             <  1:3885848/93‑1 (MQ=255)

                                                                           aCGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAg             >  2:3423260/1‑93 (MQ=255)

                                                                            cGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAgg            <  2:290305/93‑1 (MQ=255)

                                                                              ggtcaggtcaTGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGaa          <  1:1803349/93‑1 (MQ=255)

                                                                              ggtcaggtcaTGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGaa          <  2:3200472/93‑1 (MQ=255)

                                                                               gtcaggtcaTGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAAc         <  1:3222126/93‑1 (MQ=255)

                                                                                tcaggtcaTGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACt        <  2:4016131/93‑1 (MQ=255)

                                                                                tcaggtcaTGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACt        >  1:2445415/1‑93 (MQ=255)

                                                                                  aggtcaTGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTc      >  1:4575161/1‑93 (MQ=255)

                                                                                  aggtcaTGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTc      >  1:518333/1‑93 (MQ=255)

                                                                                   ggtcaTGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTCg     >  1:4553919/1‑93 (MQ=255)

CGGCAACGGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATACGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTCGCCA  >  NC_000913/3588808‑3588986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAACGGCAACGGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATACGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTCGCCACAC  >  NC_000913/3588805‑3588989

GAACGGCAACGGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGC                                                                                             <  SRR4302535.669808/94‑1 (MQ=60)

GAACGGCAACGGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGC                                                                                             >  SRR4302535.2659695/1‑94 (MQ=60)

 AACGGCAACGGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCG                                                                                            <  SRR4302535.2140816/94‑1 (MQ=60)

   CGGCAACGGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCT                                                                                          <  SRR4302535.4039452/94‑1 (MQ=60)

    GGCAACGGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGACCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTG                                                                                         <  SRR4302535.2704297/94‑1 (MQ=60)

      CAACGGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCT                                                                                       >  SRR4302535.1013417/1‑94 (MQ=60)

      CAACGGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCT                                                                                       <  SRR4302535.3610064/94‑1 (MQ=60)

      CAACGGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGCTTTTATCATAAAAACCCTGCTCACGGGTCAGGTCATGCGCTGCT                                                                                       >  SRR4302535.2790644/1‑94 (MQ=60)

       AACGGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTT                                                                                      >  SRR4302535.1912382/1‑94 (MQ=60)

         CGGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTG                                                                                    <  SRR4302535.3108648/94‑1 (MQ=60)

         CGGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTG                                                                                    <  SRR4302535.1525218/94‑1 (MQ=60)

          GGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGG                                                                                   >  SRR4302535.4661154/1‑94 (MQ=60)

          GGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGG                                                                                   >  SRR4302535.3651472/1‑94 (MQ=60)

          GGCGGCTGATTAAGAATCTGACCGGTCGCGGTAT‑CGGCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGT                                                                                  <  SRR4302535.3634353/94‑1 (MQ=60)

           GCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGT                                                                                  <  SRR4302535.3795552/94‑1 (MQ=60)

            CGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTG                                                                                 <  SRR4302535.1375674/94‑1 (MQ=60)

            CGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTG                                                                                 <  SRR4302535.3956625/94‑1 (MQ=60)

              GCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGAT                                                                               >  SRR4302535.2200661/1‑94 (MQ=60)

               CTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATT                                                                              <  SRR4302535.4064062/94‑1 (MQ=60)

                  ATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGC                                                                           >  SRR4302535.3384376/1‑94 (MQ=60)

                  ATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGGTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGC                                                                           >  SRR4302535.2596791/1‑94 (MQ=60)

                   TTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCA                                                                          <  SRR4302535.703409/94‑1 (MQ=60)

                    TCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAG                                                                         <  SRR4302535.4062064/94‑1 (MQ=60)

                    TCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAG                                                                         >  SRR4302535.4185797/1‑94 (MQ=60)

                    TCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAG                                                                         <  SRR4302535.3784439/94‑1 (MQ=60)

                     CAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGA                                                                        >  SRR4302535.164628/1‑94 (MQ=60)

                      AGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGAT                                                                       <  SRR4302535.1631247/94‑1 (MQ=60)

                      AGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGAT                                                                       <  SRR4302535.2140195/94‑1 (MQ=60)

                      AGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGCCATGCGCTGCTCTGGTGAGTGGCAGAA                                                                       >  SRR4302535.311555/1‑94 (MQ=60)

                       GCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATA                                                                      <  SRR4302535.3831553/94‑1 (MQ=60)

                       GCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATA                                                                      <  SRR4302535.500861/94‑1 (MQ=60)

                        CATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTTGCAGATAA                                                                     >  SRR4302535.38789/1‑94 (MQ=60)

                        CATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAA                                                                     <  SRR4302535.2092570/94‑1 (MQ=60)

                        CATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAA                                                                     <  SRR4302535.1759293/94‑1 (MQ=60)

                         ATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAAC                                                                    >  SRR4302535.3198031/1‑94 (MQ=60)

                          TCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACC                                                                   <  SRR4302535.4709899/94‑1 (MQ=60)

                           CTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCG                                                                  <  SRR4302535.857505/94‑1 (MQ=60)

                           CTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCG                                                                  <  SRR4302535.4361603/94‑1 (MQ=60)

                               CGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATATCCGGTTT                                                              <  SRR4302535.1335680/94‑1 (MQ=60)

                               CGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTT                                                              >  SRR4302535.1535434/1‑94 (MQ=60)

                               CGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTT                                                              <  SRR4302535.2360121/94‑1 (MQ=60)

                               CGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTT                                                              <  SRR4302535.2850796/94‑1 (MQ=60)

                                GCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTT                                                             <  SRR4302535.3382046/94‑1 (MQ=60)

                                GCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTT                                                             <  SRR4302535.1800022/94‑1 (MQ=60)

                                  GTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCT                                                           >  SRR4302535.2963893/1‑94 (MQ=60)

                                  GTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCT                                                           <  SRR4302535.2318150/94‑1 (MQ=60)

                                  GTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCT                                                           <  SRR4302535.2234235/94‑1 (MQ=60)

                                  GTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCT                                                           <  SRR4302535.4371547/94‑1 (MQ=60)

                                   TCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTG                                                          <  SRR4302535.2011577/94‑1 (MQ=60)

                                    CGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGA                                                         <  SRR4302535.4339911/94‑1 (MQ=60)

                                     GCGGTATCCGCTCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGAT                                                        <  SRR4302535.4511840/94‑1 (MQ=60)

                                      CGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATG                                                       <  SRR4302535.3948515/94‑1 (MQ=60)

                                      CGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATG                                                       <  SRR4302535.438001/94‑1 (MQ=60)

                                      CGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATG                                                       <  SRR4302535.950361/94‑1 (MQ=60)

                                       GGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGC                                                      >  SRR4302535.1693318/1‑94 (MQ=60)

                                       GGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGC                                                      >  SRR4302535.2942622/1‑94 (MQ=60)

                                       GGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGC                                                      >  SRR4302535.3269843/1‑94 (MQ=60)

                                       GGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGC                                                      <  SRR4302535.3923677/94‑1 (MQ=60)

                                         TATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCA                                                    >  SRR4302535.3755545/1‑94 (MQ=60)

                                           TCCTCCCCTGGGTGTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACT                                                  <  SRR4302535.1460934/94‑1 (MQ=60)

                                           TCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACT                                                  <  SRR4302535.4477798/94‑1 (MQ=60)

                                             CGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCG                                                <  SRR4302535.1445939/94‑1 (MQ=60)

                                               CCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGC                                              >  SRR4302535.3227321/1‑94 (MQ=60)

                                               CCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGC                                              >  SRR4302535.280303/1‑94 (MQ=60)

                                               CCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGCC                                              >  SRR4302535.1364270/1‑94 (MQ=60)

                                                CCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCA                                             >  SRR4302535.2911432/1‑94 (MQ=60)

                                                CCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCA                                             >  SRR4302535.2960516/1‑94 (MQ=60)

                                                 CCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAG                                            >  SRR4302535.2416332/1‑94 (MQ=60)

                                                  CTGCGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGC                                           <  SRR4302535.4647716/94‑1 (MQ=60)

                                                   TGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCG                                          <  SRR4302535.1970530/94‑1 (MQ=60)

                                                   TGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCG                                          >  SRR4302535.499129/1‑94 (MQ=60)

                                                   TGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCG                                          <  SRR4302535.4346948/94‑1 (MQ=60)

                                                     GGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTTGTGATTGGCAGATAACCGGTTTTCTGATGCAACTAGGCAGCGTT                                        >  SRR4302535.4112216/1‑94 (MQ=60)

                                                     GGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTT                                        >  SRR4302535.254708/1‑94 (MQ=60)

                                                     GGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTT                                        >  SRR4302535.3972438/1‑94 (MQ=60)

                                                     GGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTT                                        <  SRR4302535.4624217/94‑1 (MQ=60)

                                                      GTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTT                                       >  SRR4302535.2899221/1‑94 (MQ=60)

                                                       TTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGATTTCTGATGCCACTCGGCAGCGTTTT                                      >  SRR4302535.810948/1‑94 (MQ=60)

                                                        TTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTC                                     >  SRR4302535.257934/1‑94 (MQ=60)

                                                         TTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCT                                    <  SRR4302535.1633599/94‑1 (MQ=60)

                                                         TTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCT                                    <  SRR4302535.3027192/94‑1 (MQ=60)

                                                          TTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTG                                   <  SRR4302535.3694094/94‑1 (MQ=60)

                                                           TCTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGG                                  <  SRR4302535.2604718/94‑1 (MQ=60)

                                                            CTCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGC                                 >  SRR4302535.3224534/1‑94 (MQ=60)

                                                             TCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCT                                <  SRR4302535.810126/94‑1 (MQ=60)

                                                             TCATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCT                                <  SRR4302535.2518901/94‑1 (MQ=60)

                                                              CATAAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTT                               >  SRR4302535.4657525/1‑94 (MQ=60)

                                                                 AAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGC                            >  SRR4302535.2433195/1‑94 (MQ=60)

                                                                 AAAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGC                            <  SRR4302535.91092/94‑1 (MQ=60)

                                                                  AAAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCG                           >  SRR4302535.3671331/1‑94 (MQ=60)

                                                                   AAGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGA                          >  SRR4302535.909223/1‑94 (MQ=60)

                                                                    AGCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAG                         <  SRR4302535.1855444/94‑1 (MQ=60)

                                                                     GCCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGG                        <  SRR4302535.77566/94‑1 (MQ=60)

                                                                      CCCTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGA                       <  SRR4302535.2462737/94‑1 (MQ=60)

                                                                        CTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAA                     >  SRR4302535.3111576/1‑94 (MQ=60)

                                                                        CTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAA                     >  SRR4302535.3376087/1‑94 (MQ=60)

                                                                        CTGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAA                     >  SRR4302535.381130/1‑94 (MQ=60)

                                                                         TGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAAT                    <  SRR4302535.42545/94‑1 (MQ=60)

                                                                         TGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAAT                    <  SRR4302535.1435275/94‑1 (MQ=60)

                                                                         TGCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAAT                    >  SRR4302535.153853/1‑94 (MQ=60)

                                                                          GCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATC                   >  SRR4302535.4214527/1‑94 (MQ=60)

                                                                          GCTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATC                   >  SRR4302535.459565/1‑94 (MQ=60)

                                                                           GTCACGGGTCAGCTCATGCGCTGCTTCGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCG                  <  SRR4302535.374914/94‑1 (MQ=60)

                                                                           CTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCG                  >  SRR4302535.3420582/1‑94 (MQ=60)

                                                                           CTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCG                  >  SRR4302535.16252/1‑94 (MQ=60)

                                                                           CTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCG                  <  SRR4302535.1356138/94‑1 (MQ=60)

                                                                           CTCACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCG                  >  SRR4302535.749747/1‑94 (MQ=60)

                                                                             CACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAG                <  SRR4302535.936145/94‑1 (MQ=60)

                                                                             CACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAG                <  SRR4302535.611451/94‑1 (MQ=60)

                                                                              ACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGG               <  SRR4302535.3912502/94‑1 (MQ=60)

                                                                              ACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGG               <  SRR4302535.773309/94‑1 (MQ=60)

                                                                              ACGGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGG               <  SRR4302535.1335071/94‑1 (MQ=60)

                                                                                GGGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAA             <  SRR4302535.3053367/94‑1 (MQ=60)

                                                                                 GGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAAC            <  SRR4302535.1816383/94‑1 (MQ=60)

                                                                                 GGTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAAC            <  SRR4302535.1673098/94‑1 (MQ=60)

                                                                                  GTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACT           <  SRR4302535.3244458/94‑1 (MQ=60)

                                                                                  GTCAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACT           >  SRR4302535.2463030/1‑94 (MQ=60)

                                                                                    CAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTC         >  SRR4302535.521963/1‑94 (MQ=60)

                                                                                    CAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTC         >  SRR4302535.4606341/1‑94 (MQ=60)

                                                                                    CAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTC         <  SRR4302535.1161078/94‑1 (MQ=60)

                                                                                    CAGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGACGAACTTC         >  SRR4302535.4126823/1‑94 (MQ=60)

                                                                                     AGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTCG        >  SRR4302535.4585030/1‑94 (MQ=60)

                                                                                     AGGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTCG        <  SRR4302535.3510834/94‑1 (MQ=60)

                                                                                      GGTCATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTCGC       >  SRR4302535.1491695/1‑94 (MQ=60)

                                                                                          ATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTCGCCACA   >  SRR4302535.1778224/1‑94 (MQ=60)

                                                                                          ATGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTCGCCACA   >  SRR4302535.91669/1‑94 (MQ=60)

                                                                                           TGCGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTCGCCACAC  <  SRR4302535.2471135/94‑1 (MQ=60)

GAACGGCAACGGCGGCTTATTCAGCATCTGACGCGTCGCGGTATCCGCCCCTGGGTTTTTCTCATAAAAGCCCTGCTCACGGGTCAGGTCATACGCTGCTTTGGTGATTGGCAGATAACCGGTTTTCTGATGCCACTCGGCAGCGTTTTCTGGCTTCGCGAGGAAATCGAGGAACTTCGCCACAC  >  NC_000913/3588805‑3588989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`