Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,595,797 |
A→G |
G61G (GGA→GGG) |
yhhK → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,595,797 | 0 | A | G | 99.5%
| 672.7
/ NA
| 213 | G61G (GGA→GGG) | yhhK | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (117/95); minor base C (1/0); total (118/95) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 221 total aligned reads displayed.
ACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGAGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGG > NC_000913/3595707‑3595886
|
cAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCa > 1:2929783/1‑93 (MQ=255)
aGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCAc < 1:3232226/93‑1 (MQ=255)
ggTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCAcg > 1:227255/1‑92 (MQ=255)
gTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTg < 1:3543744/93‑1 (MQ=255)
gTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTg > 1:3037054/1‑93 (MQ=255)
gTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTg > 1:3330946/1‑93 (MQ=255)
gACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGAt > 1:921953/1‑93 (MQ=255)
aCGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGAtt < 2:2310722/93‑1 (MQ=255)
gATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTcc > 2:2059137/1‑93 (MQ=255)
aTAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTccc > 2:2921669/1‑93 (MQ=255)
aTAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTccc < 2:2470044/93‑1 (MQ=255)
tAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCt > 2:285320/1‑93 (MQ=255)
aaCCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTg > 1:3247552/1‑93 (MQ=255)
accaccGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTgc > 1:4052932/1‑93 (MQ=255)
accaccGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTgc > 1:925676/1‑93 (MQ=255)
ccaccGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTgcg > 2:3923923/1‑93 (MQ=255)
ccaccGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTgcg > 1:4094878/1‑93 (MQ=255)
accGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTACCTGcgcg > 1:680310/1‑93 (MQ=255)
accGTATCTACGCCGCGCGTTTTAAAGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCAGCGAGGGGGCACTGGATTCTCcgcgcg > 1:424179/1‑93 (MQ=255)
ccGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGt > 1:2651960/1‑93 (MQ=255)
gTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGc > 1:2430196/1‑93 (MQ=255)
gTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGc > 1:787353/1‑93 (MQ=255)
gTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGc < 2:4439331/93‑1 (MQ=255)
tATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCg > 2:1963844/1‑93 (MQ=255)
aTCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCgg < 1:505306/93‑1 (MQ=255)
tACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGaa > 1:2578440/1‑93 (MQ=255)
aCGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAg > 1:4512084/1‑93 (MQ=255)
aCGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAg < 1:1203557/93‑1 (MQ=255)
cgccgcGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGt < 2:2579606/93‑1 (MQ=255)
cgccgcGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGt < 2:2703519/93‑1 (MQ=255)
gccgcGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCCTGCGGGAAGTc > 2:835173/1‑93 (MQ=255)
cgcgcgTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCAc < 2:1119096/93‑1 (MQ=255)
cgcgcgTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCAc > 1:2313820/1‑93 (MQ=255)
gcgcgTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCAcc < 1:1915800/93‑1 (MQ=255)
gcgcgTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCAcc < 2:3527904/93‑1 (MQ=255)
gcgTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACccg > 2:2997104/1‑93 (MQ=255)
cgTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACccgc < 1:162215/93‑1 (MQ=255)
cgTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACccgc > 1:4674804/1‑93 (MQ=255)
gTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACccgcc > 2:4104862/1‑93 (MQ=255)
gTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACccgcc > 1:3366168/1‑93 (MQ=255)
gTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACccgcc > 1:3817070/1‑93 (MQ=255)
ttttAACGAGCGCCTGCTCGCTGCCGTGCGGGTAGCTTAAAGCGGCACCGAGGGGGCCTTGGTTTCCCTGCGGGTGCGGGAAGTCACccgccg < 2:2182417/93‑1 (MQ=255)
ttttAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACccgccg > 2:1244595/1‑93 (MQ=255)
tttAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGt > 1:538169/1‑93 (MQ=255)
aaCGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTcgc < 1:3962988/93‑1 (MQ=255)
aaCGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTcgc > 1:1793157/1‑93 (MQ=255)
aaCGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTcgc > 1:2169654/1‑93 (MQ=255)
cGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCgg > 1:3489754/1‑93 (MQ=255)
aGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGgtg > 2:4000730/1‑93 (MQ=255)
aGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGgtg < 2:1601177/93‑1 (MQ=255)
gcgcCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGgtgt > 1:1957614/1‑93 (MQ=255)
gcgcCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGgtgg > 1:469719/1‑92 (MQ=255)
cgcCGGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGtgtg < 2:2141089/93‑1 (MQ=255)
ccTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTggg < 1:2722852/93‑1 (MQ=255)
ccTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTggg < 2:4474947/93‑1 (MQ=255)
cTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTgggg < 1:575965/93‑1 (MQ=255)
cTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTgggg > 2:4501193/1‑93 (MQ=255)
cTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTgggg > 1:3123015/1‑93 (MQ=255)
tGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGc > 1:296728/1‑93 (MQ=255)
tGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGc > 2:1795941/1‑93 (MQ=255)
gCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCa > 1:706296/1‑93 (MQ=255)
cGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAata < 2:3406322/93‑1 (MQ=255)
cTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATc < 1:3524932/93‑1 (MQ=255)
cTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATc < 2:3622344/93‑1 (MQ=255)
cTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATc > 1:11466/1‑93 (MQ=255)
cTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATc > 1:4621185/1‑93 (MQ=255)
tGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCCCCCGCCGTCGCGGTGTGGGGCAATATct < 2:4372701/93‑1 (MQ=255)
tGCCGTGCGGGTAACCTTAAACGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATct > 2:3832404/1‑93 (MQ=255)
gCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCGATATctg > 2:345536/1‑93 (MQ=255)
gCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGACGTCGCGGTGTGGCGCAATATctg > 2:2824969/1‑93 (MQ=255)
ctgTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATctgc < 2:1020634/91‑1 (MQ=255)
ccGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATctgc < 2:574457/93‑1 (MQ=255)
cGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATctgct > 2:1861924/1‑93 (MQ=255)
gTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATctgctg < 2:4218113/93‑1 (MQ=255)
gTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATctgctg > 1:1025566/1‑93 (MQ=255)
cGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGaa < 2:1515613/93‑1 (MQ=255)
gggTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAag > 2:2893006/1‑93 (MQ=255)
gggTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAag > 2:2218179/1‑93 (MQ=255)
ggTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAaga < 1:2212042/93‑1 (MQ=255)
aaCCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGt > 2:1356502/1‑93 (MQ=255)
aCCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGtt > 1:3018462/1‑93 (MQ=255)
aCCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGtt > 1:2445790/1‑93 (MQ=255)
aCCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGtt < 1:1690745/93‑1 (MQ=255)
cTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGtttt > 1:1580631/1‑93 (MQ=255)
cTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGtttt < 2:3764588/93‑1 (MQ=255)
ttAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTg > 1:1443315/1‑93 (MQ=255)
ttAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTg < 2:1040127/93‑1 (MQ=255)
tAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGc < 1:4455160/93‑1 (MQ=255)
gCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTa < 2:774571/93‑1 (MQ=255)
cGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTaa < 2:1171983/93‑1 (MQ=255)
ggCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAAc < 2:3045249/93‑1 (MQ=255)
gCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACa > 1:310708/1‑93 (MQ=255)
aCCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAAt < 2:1687344/93‑1 (MQ=255)
aCCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAAt < 1:4343999/93‑1 (MQ=255)
ccGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATc < 2:2018073/93‑1 (MQ=255)
ccGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATc < 1:2281858/93‑1 (MQ=255)
cGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATcc < 2:822600/93‑1 (MQ=255)
gAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCt < 2:3143131/93‑1 (MQ=255)
aGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTg < 2:480914/93‑1 (MQ=255)
ggggGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTgg < 1:2891953/93‑1 (MQ=255)
|
ACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGAGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGG > NC_000913/3595707‑3595886
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGAGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGGC > NC_000913/3595704‑3595887
|
GTTACAGTTGGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGG < SRR4302535.446667/94‑1 (MQ=60)
GTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGG > SRR4302535.2892739/1‑94 (MQ=60)
GTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGG > SRR4302535.2906283/1‑94 (MQ=60)
GTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGG < SRR4302535.437807/94‑1 (MQ=60)
GTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGG < SRR4302535.3974710/94‑1 (MQ=60)
GTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGG > SRR4302535.3115873/1‑94 (MQ=60)
GTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGG < SRR4302535.1847432/94‑1 (MQ=60)
GTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGG < SRR4302535.1723075/94‑1 (MQ=60)
TTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGG < SRR4302535.3753097/94‑1 (MQ=60)
TTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGG < SRR4302535.3676155/94‑1 (MQ=60)
ACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCA > SRR4302535.2950423/1‑94 (MQ=60)
AGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACT < SRR4302535.3254639/94‑1 (MQ=60)
AGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACG > SRR4302535.228818/1‑94 (MQ=60)
GGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTG > SRR4302535.3354132/1‑94 (MQ=60)
GGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTG > SRR4302535.3058325/1‑94 (MQ=60)
GGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTG > SRR4302535.2292475/1‑94 (MQ=60)
GTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGG < SRR4302535.3568358/94‑1 (MQ=60)
TGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGAT > SRR4302535.3230501/1‑94 (MQ=60)
TGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGAT < SRR4302535.3118897/94‑1 (MQ=60)
TGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGAT > SRR4302535.928489/1‑94 (MQ=60)
GACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATT > SRR4302535.4551862/1‑94 (MQ=60)
GACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATT > SRR4302535.2685561/1‑94 (MQ=60)
GATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCC < SRR4302535.288444/94‑1 (MQ=60)
ATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCT > SRR4302535.3437364/1‑94 (MQ=60)
ATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCT > SRR4302535.3615234/1‑94 (MQ=60)
ATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCT > SRR4302535.4067775/1‑94 (MQ=60)
ATAACCACCGTATCTACGCCGCGCGTTTTAACGAGAGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCT < SRR4302535.98432/94‑1 (MQ=60)
TAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTG > SRR4302535.3270109/1‑94 (MQ=60)
AACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGC > SRR4302535.932233/1‑94 (MQ=60)
AACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGC > SRR4302535.4080683/1‑94 (MQ=60)
ACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCG > SRR4302535.4122899/1‑94 (MQ=60)
CACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCG > SRR4302535.567955/1‑94 (MQ=60)
CACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCG > SRR4302535.2364743/1‑94 (MQ=60)
CACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTACCTGCGCG > SRR4302535.685076/1‑94 (MQ=60)
CACCGTATCTACGCCGCGCGTTTTAAAGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCAGCGAGGGGGCACTGGATTCTCCGCGCG > SRR4302535.427138/1‑94 (MQ=60)
ACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGT > SRR4302535.1673826/1‑94 (MQ=60)
ACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGT > SRR4302535.2670957/1‑94 (MQ=60)
CGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGC > SRR4302535.792877/1‑94 (MQ=60)
CGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGC > SRR4302535.2447705/1‑94 (MQ=60)
GTCTCTCCGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCG < SRR4302535.2078662/94‑1 (MQ=60)
GTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCG < SRR4302535.3516899/94‑1 (MQ=60)
ATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGG > SRR4302535.1477728/1‑94 (MQ=60)
ATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGG < SRR4302535.500296/94‑1 (MQ=60)
ATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGG > SRR4302535.2637610/1‑94 (MQ=60)
ATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGG < SRR4302535.508838/94‑1 (MQ=60)
ATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGG > SRR4302535.302/1‑94 (MQ=60)
ATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGCGCACTGGATTCCCTGCGCGTGCCGG > SRR4302535.885722/1‑94 (MQ=60)
TCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGA > SRR4302535.2269481/1‑94 (MQ=60)
CTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAA < SRR4302535.3331242/94‑1 (MQ=60)
CTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAA < SRR4302535.3262172/94‑1 (MQ=60)
CTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAA > SRR4302535.2596968/1‑94 (MQ=60)
TACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAG > SRR4302535.4543029/1‑94 (MQ=60)
ACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGT < SRR4302535.1212196/94‑1 (MQ=60)
GCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCA < SRR4302535.2934115/94‑1 (MQ=60)
CCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCAC > SRR4302535.2330375/1‑94 (MQ=60)
CCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCAC > SRR4302535.711802/1‑94 (MQ=60)
GCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCC < SRR4302535.1929606/94‑1 (MQ=60)
CGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCgc > SRR4302535.1310209/1‑92 (MQ=60)
GCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGC > SRR4302535.4706364/1‑94 (MQ=60)
CGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCC < SRR4302535.163347/94‑1 (MQ=60)
CGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCC > SRR4302535.3389592/1‑94 (MQ=60)
CGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCC < SRR4302535.444261/94‑1 (MQ=60)
CGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCC > SRR4302535.3843411/1‑94 (MQ=60)
GTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCG > SRR4302535.471885/1‑94 (MQ=60)
TTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGT > SRR4302535.541927/1‑94 (MQ=60)
TTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTC < SRR4302535.2033793/94‑1 (MQ=60)
TTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCG > SRR4302535.2952180/1‑94 (MQ=60)
TAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGC > SRR4302535.2185193/1‑94 (MQ=60)
TAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGC < SRR4302535.4358129/94‑1 (MQ=60)
TAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGC > SRR4302535.1806121/1‑94 (MQ=60)
AACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCG < SRR4302535.3990056/94‑1 (MQ=60)
ACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGG > SRR4302535.3514003/1‑94 (MQ=60)
AGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGT > SRR4302535.2587006/1‑94 (MQ=60)
AGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGT > SRR4302535.1971706/1‑94 (MQ=60)
AGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGG > SRR4302535.473004/1‑94 (MQ=60)
CCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGG < SRR4302535.4691237/94‑1 (MQ=60)
CCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGG > SRR4302535.3144764/1‑94 (MQ=60)
CCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGG < SRR4302535.2742303/94‑1 (MQ=60)
CCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGG < SRR4302535.2882606/94‑1 (MQ=60)
CTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGC > SRR4302535.2325131/1‑94 (MQ=60)
CTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGC > SRR4302535.298795/1‑94 (MQ=60)
CTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGC < SRR4302535.580011/94‑1 (MQ=60)
TGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCA > SRR4302535.711257/1‑94 (MQ=60)
GCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAA > SRR4302535.4095895/1‑94 (MQ=60)
TCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATA < SRR4302535.1600890/94‑1 (MQ=60)
CGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATAT < SRR4302535.3925593/94‑1 (MQ=60)
CGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATAT > SRR4302535.4695398/1‑94 (MQ=60)
GCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATC > SRR4302535.11555/1‑94 (MQ=60)
GCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATC > SRR4302535.4652581/1‑94 (MQ=60)
CTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCT > SRR4302535.1182676/1‑94 (MQ=60)
CTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCT < SRR4302535.3549410/94‑1 (MQ=60)
GCCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCATTATCTGC > SRR4302535.3552625/1‑94 (MQ=60)
CCGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGGGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCG > SRR4302535.2448205/1‑94 (MQ=60)
CGTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTG > SRR4302535.1032851/1‑94 (MQ=60)
GTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGG > SRR4302535.958321/1‑94 (MQ=60)
GTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGG > SRR4302535.2371072/1‑94 (MQ=60)
GTGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGG > SRR4302535.3335746/1‑94 (MQ=60)
TGCGGGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGA < SRR4302535.3049730/94‑1 (MQ=60)
GCGGGTACCCTTAAGCGGCACCGAGGGGGCCCTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAA < SRR4302535.1631885/94‑1 (MQ=60)
GGTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAG < SRR4302535.2227798/94‑1 (MQ=60)
GTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGG < SRR4302535.4512669/94‑1 (MQ=60)
GTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGG < SRR4302535.305026/94‑1 (MQ=60)
GTAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGG > SRR4302535.59677/1‑94 (MQ=60)
TAACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGT < SRR4302535.1943044/94‑1 (MQ=60)
AACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTT > SRR4302535.2194110/1‑94 (MQ=60)
AACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTT < SRR4302535.3134989/94‑1 (MQ=60)
AACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTT > SRR4302535.2463407/1‑94 (MQ=60)
AACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTT > SRR4302535.3039605/1‑94 (MQ=60)
ACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTT > SRR4302535.36540/1‑94 (MQ=60)
ACCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTT < SRR4302535.1702981/94‑1 (MQ=60)
CCTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTT > SRR4302535.1592041/1‑94 (MQ=60)
CTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTG > SRR4302535.4287584/1‑94 (MQ=60)
CTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTG > SRR4302535.1453637/1‑94 (MQ=60)
CTTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTG < SRR4302535.2171726/94‑1 (MQ=60)
TTAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGC > SRR4302535.1724252/1‑94 (MQ=60)
TAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCG < SRR4302535.624557/94‑1 (MQ=60)
TAAGCGGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCG < SRR4302535.4485713/94‑1 (MQ=60)
GGCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACA > SRR4302535.312863/1‑94 (MQ=60)
GCACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAA > SRR4302535.1885222/1‑94 (MQ=60)
CACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAAT < SRR4302535.706246/94‑1 (MQ=60)
CACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAAT < SRR4302535.3389361/94‑1 (MQ=60)
ACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATC > SRR4302535.523549/1‑94 (MQ=60)
ACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATC < SRR4302535.4373718/94‑1 (MQ=60)
ACCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATC > SRR4302535.929985/1‑94 (MQ=60)
CCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCC < SRR4302535.4162376/94‑1 (MQ=60)
CCGAGGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCC < SRR4302535.2298159/94‑1 (MQ=60)
GGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGGC < SRR4302535.2912412/94‑1 (MQ=60)
GGGGGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGGC < SRR4302535.1108201/94‑1 (MQ=60)
|
GTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTGCCGTGCGGGTAACCTTAAGCGGCACCGAGGGAGCACTGGATTCCCTGCGCGTGCGGGAAGTCACCCGCCGTCGCGGTGTGGGGCAATATCTGCTGGAAGAGGTTTTGCGTAACAATCCTGGC > NC_000913/3595704‑3595887
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
