Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,604,952	T→C	S291P (TCC→CCC)	zntA →	zinc‑transporting ATPase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,604,952	0	T	C	100.0%	609.0 / NA	193	S291P (TCC→CCC)	zntA	zinc‑transporting ATPase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (91/102); total (91/102)

Only 100 of 203 total aligned reads displayed.

TTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAATCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAA  >  NC_000913/3604863‑3605041

ttGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCa                                                                                        >  1:719976/1‑93 (MQ=255)

ttGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCa                                                                                        >  2:2376517/1‑93 (MQ=255)

ttGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCa                                                                                        <  2:3218796/93‑1 (MQ=255)

   aaGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAAACCATTc                                                                                     >  2:1690188/1‑93 (MQ=255)

     gTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCg                                                                                   >  1:191136/1‑93 (MQ=255)

      tCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCgg                                                                                  <  2:1761044/93‑1 (MQ=255)

      tCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCgg                                                                                  >  2:2287949/1‑93 (MQ=255)

        gccgcAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTg                                                                                <  2:1591173/93‑1 (MQ=255)

          cgcAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGa                                                                              <  2:2892341/93‑1 (MQ=255)

           gcAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAg                                                                             <  2:316210/93‑1 (MQ=255)

            cAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAgc                                                                            >  1:3320662/1‑93 (MQ=255)

                tGGGCGTTCGCCTGCCGACGGTAATCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAgcgcgc                                                                        <  2:2282294/93‑1 (MQ=255)

                  ggCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCaa                                                                      >  2:2226745/1‑93 (MQ=255)

                   gCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAAc                                                                     <  1:405438/93‑1 (MQ=255)

                     gTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACgg                                                                   <  1:3435565/93‑1 (MQ=255)

                     gTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACgg                                                                   >  1:1259263/1‑93 (MQ=255)

                     gTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACgg                                                                   >  1:1706301/1‑93 (MQ=255)

                     gTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACgg                                                                   <  1:370096/93‑1 (MQ=255)

                      cttGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACggg                                                                  >  1:3185402/2‑93 (MQ=255)

                       ttGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAACGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGc                                                                 <  2:2476745/93‑1 (MQ=255)

                         gcctgccGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGa                                                               <  1:1235786/93‑1 (MQ=255)

                         gcctgccGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGa                                                               >  1:4186327/1‑93 (MQ=255)

                          cctgccGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGAt                                                              <  2:2612155/93‑1 (MQ=255)

                          cctgccGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCATGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCgca                                                              >  1:2472158/1‑91 (MQ=255)

                           ctgccGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATa                                                             >  2:1060022/1‑93 (MQ=255)

                           ctgccGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATa                                                             >  1:93020/1‑93 (MQ=255)

                            tgccGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATaa                                                            <  1:2888353/93‑1 (MQ=255)

                            tgccGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATaa                                                            >  1:2265673/1‑93 (MQ=255)

                              ccGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAg                                                          >  1:938941/1‑93 (MQ=255)

                               cGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGt                                                         >  1:2908115/1‑93 (MQ=255)

                               cGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGt                                                         <  1:2923346/93‑1 (MQ=255)

                                gACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTc                                                        <  2:676800/93‑1 (MQ=255)

                                  cGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTccc                                                      <  2:63108/93‑1 (MQ=255)

                                  cGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTccc                                                      <  1:2098334/93‑1 (MQ=255)

                                  cGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTccc                                                      <  2:2118703/93‑1 (MQ=255)

                                  cGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTccc                                                      <  2:599647/93‑1 (MQ=255)

                                     tAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCctgc                                                   <  1:3773580/93‑1 (MQ=255)

                                      aaaCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCctgct                                                  <  1:149201/93‑1 (MQ=255)

                                      aaaCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCctgct                                                  <  1:1811633/93‑1 (MQ=255)

                                      aaaCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCctgct                                                  >  1:838520/1‑93 (MQ=255)

                                       aaCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCctgctg                                                 <  1:4232390/93‑1 (MQ=255)

                                       aaCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCctgctg                                                 <  2:4519964/93‑1 (MQ=255)

                                        aCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTgg                                                <  2:1438563/93‑1 (MQ=255)

                                        aCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTgg                                                >  2:2755736/1‑93 (MQ=255)

                                        aCTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTgg                                                <  1:1964794/93‑1 (MQ=255)

                                             tctcACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGcca                                           >  2:2717368/1‑93 (MQ=255)

                                             tctcACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGcca                                           >  1:2702672/1‑93 (MQ=255)

                                               tcACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGccacc                                         <  2:406686/93‑1 (MQ=255)

                                                cACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGccacca                                        >  1:425446/1‑93 (MQ=255)

                                                  ccGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGc                                      <  2:3863167/93‑1 (MQ=255)

                                                  ccGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGc                                      <  2:192042/93‑1 (MQ=255)

                                                   cGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCg                                     >  2:3125886/1‑93 (MQ=255)

                                                    gTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGt                                    >  1:2553363/1‑93 (MQ=255)

                                                    gTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGt                                    >  1:1147185/1‑93 (MQ=255)

                                                     tttGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTa                                   <  2:4427838/93‑1 (MQ=255)

                                                     tttGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTa                                   <  2:2965603/93‑1 (MQ=255)

                                                     tttGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGGGCCACAAGCGtg                                   >  2:2525354/1‑92 (MQ=255)

                                                      ttGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAg                                  <  2:3983147/93‑1 (MQ=255)

                                                       tGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGa                                 <  1:2532228/93‑1 (MQ=255)

                                                        tccAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGAc                                <  1:2980994/92‑1 (MQ=255)

                                                          cAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGCTAAAGTCCCTGCTGGTGCCACCAGCGTAGACCg                              >  2:2042822/1‑93 (MQ=255)

                                                           aGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGt                             <  1:4090647/93‑1 (MQ=255)

                                                            gTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTc                            >  2:467358/1‑93 (MQ=255)

                                                             ttttGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCt                           >  2:435303/1‑93 (MQ=255)

                                                             ttttGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCt                           >  1:2347281/1‑93 (MQ=255)

                                                              tttGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTg                          >  2:2080735/1‑93 (MQ=255)

                                                               ttGATGAAAGCGCCTTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTgg                         <  2:3751926/93‑1 (MQ=255)

                                                               ttGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTgg                         <  1:1408273/93‑1 (MQ=255)

                                                                tgattaAAGCGCCCTGACCGGCCAACTGACTCGGGTCGAGCGCGCAACGGGCAATAAAGTCCCTGCAGGTGCCACCAGCGTAGACCGTCTGGt                        <  2:3703726/93‑1 (MQ=255)

                                                                tgatgaAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTggg                        >  1:51029/1‑92 (MQ=255)

                                                                tgatgaAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGt                        <  1:3061208/93‑1 (MQ=255)

                                                                tgatgaAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGt                        <  1:1562050/93‑1 (MQ=255)

                                                                 gatgaAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTg                       >  1:1981374/1‑93 (MQ=255)

                                                                 gatgaAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTg                       >  1:2614314/1‑93 (MQ=255)

                                                                 gatgaAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTg                       >  2:3944522/1‑93 (MQ=255)

                                                                 gatgaAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTg                       >  2:83313/1‑93 (MQ=255)

                                                                   tgaAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGAc                     >  2:2210119/1‑93 (MQ=255)

                                                                   tgaAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGAc                     <  1:3567366/93‑1 (MQ=255)

                                                                    gaAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACg                    >  2:3506307/1‑93 (MQ=255)

                                                                     aaaGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGt                   <  1:4431182/93‑1 (MQ=255)

                                                                     aaaGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGt                   <  1:2423917/93‑1 (MQ=255)

                                                                       aGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTg                 <  2:3652726/93‑1 (MQ=255)

                                                                       aGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTg                 <  1:994934/93‑1 (MQ=255)

                                                                          gcCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGaa              >  2:3474417/1‑93 (MQ=255)

                                                                          gcCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGaa              >  2:3097813/1‑93 (MQ=255)

                                                                          gcCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGaa              <  1:2804383/93‑1 (MQ=255)

                                                                           cccTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAg             >  2:3323468/1‑93 (MQ=255)

                                                                           cccTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAg             >  2:816276/1‑93 (MQ=255)

                                                                             cTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGGGACGTTGGAAgcg           >  1:4329402/1‑91 (MQ=255)

                                                                             cTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCCTAGACCGTCTGGTGACGTTGGAAGTg           >  2:3794331/1‑93 (MQ=255)

                                                                              tGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGAGACGTTGGAAGTGc          >  2:4562746/1‑93 (MQ=255)

                                                                                aCCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTg        <  1:3544749/93‑1 (MQ=255)

                                                                                  cGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTc      <  2:557422/93‑1 (MQ=255)

                                                                                    gCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAg    >  1:217491/1‑93 (MQ=255)

                                                                                    gCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAg    >  1:2370498/1‑93 (MQ=255)

                                                                                     cGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGa   <  2:867219/93‑1 (MQ=255)

                                                                                      gAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGaa  <  2:2368843/93‑1 (MQ=255)

                                                                                      gAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGaa  >  1:2119563/1‑93 (MQ=255)

                                                                                      gAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGaa  <  2:3518972/93‑1 (MQ=255)

                                                                                      gAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGaa  >  2:3605034/1‑93 (MQ=255)

TTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAATCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAA  >  NC_000913/3604863‑3605041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTGATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAATCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGG  >  NC_000913/3604859‑3605045

GTGATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAAC                                                                                               >  SRR4302535.1774998/1‑94 (MQ=60)

GTGATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAAC                                                                                               <  SRR4302535.2150225/94‑1 (MQ=60)

GTGATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAAC                                                                                               >  SRR4302535.1463115/1‑94 (MQ=60)

 TGATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACC                                                                                              >  SRR4302535.1215983/1‑94 (MQ=60)

   ATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCA                                                                                            >  SRR4302535.725034/1‑94 (MQ=60)

    TTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCAT                                                                                           <  SRR4302535.1688523/94‑1 (MQ=60)

    TTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCAT                                                                                           <  SRR4302535.2662917/94‑1 (MQ=60)

      GAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTC                                                                                         >  SRR4302535.344825/1‑94 (MQ=60)

      GAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTC                                                                                         <  SRR4302535.556476/94‑1 (MQ=60)

       AAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCC                                                                                        <  SRR4302535.774912/94‑1 (MQ=60)

       AAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCC                                                                                        >  SRR4302535.1358597/1‑94 (MQ=60)

       AAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCC                                                                                        <  SRR4302535.2443299/94‑1 (MQ=60)

        AGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCG                                                                                       >  SRR4302535.192458/1‑94 (MQ=60)

           CGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTG                                                                                    <  SRR4302535.2934977/94‑1 (MQ=60)

              CGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAG                                                                                 >  SRR4302535.4159612/1‑94 (MQ=60)

               GCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGC                                                                                >  SRR4302535.3343768/1‑94 (MQ=60)

                CAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCG                                                                               >  SRR4302535.3609263/1‑94 (MQ=60)

                     GGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAA                                                                          <  SRR4302535.1478765/94‑1 (MQ=60)

                     GGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAA                                                                          >  SRR4302535.943685/1‑94 (MQ=60)

                      GGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAAC                                                                         <  SRR4302535.951309/94‑1 (MQ=60)

                       GCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACG                                                                        <  SRR4302535.408278/94‑1 (MQ=60)

                        CGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGG                                                                       >  SRR4302535.1268276/1‑94 (MQ=60)

                        CGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGG                                                                       >  SRR4302535.1718635/1‑94 (MQ=60)

                         GTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGG                                                                      >  SRR4302535.1982989/1‑94 (MQ=60)

                         GTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGG                                                                      <  SRR4302535.3459441/94‑1 (MQ=60)

                         GTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGG                                                                      <  SRR4302535.372654/94‑1 (MQ=60)

                         GCTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGG                                                                      >  SRR4302535.3207425/1‑94 (MQ=60)

                           TTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCG                                                                    >  SRR4302535.4360092/1‑94 (MQ=60)

                            TGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGA                                                                   >  SRR4302535.4214979/1‑94 (MQ=60)

                            TGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGA                                                                   <  SRR4302535.1545270/94‑1 (MQ=60)

                             GCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGAT                                                                  <  SRR4302535.1244615/94‑1 (MQ=60)

                             GCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCATGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGca                                                                  >  SRR4302535.2489981/1‑92 (MQ=60)

                              CCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATA                                                                 >  SRR4302535.93678/1‑94 (MQ=60)

                               CTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAA                                                                >  SRR4302535.2281818/1‑94 (MQ=60)

                                TGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAA                                                               <  SRR4302535.2908789/94‑1 (MQ=60)

                                 TCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAG                                                              <  SRR4302535.2785895/94‑1 (MQ=60)

                                 GCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAG                                                              >  SRR4302535.945592/1‑94 (MQ=60)

                                  CCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGT                                                             >  SRR4302535.2928670/1‑94 (MQ=60)

                                   CGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTC                                                            >  SRR4302535.3763185/1‑94 (MQ=60)

                                   CGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTC                                                            <  SRR4302535.2943960/94‑1 (MQ=60)

                                     ACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCC                                                          >  SRR4302535.2133000/1‑94 (MQ=60)

                                      CGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCT                                                         >  SRR4302535.2246600/1‑94 (MQ=60)

                                      CGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCT                                                         >  SRR4302535.2379130/1‑94 (MQ=60)

                                      CGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCT                                                         <  SRR4302535.2113469/94‑1 (MQ=60)

                                        GTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGC                                                       <  SRR4302535.4557085/94‑1 (MQ=60)

                                         TAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCT                                                      >  SRR4302535.844408/1‑94 (MQ=60)

                                         TAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCT                                                      <  SRR4302535.1781957/94‑1 (MQ=60)

                                         TAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCT                                                      <  SRR4302535.3799608/94‑1 (MQ=60)

                                          AAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTG                                                     <  SRR4302535.1824732/94‑1 (MQ=60)

                                          AAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTG                                                     <  SRR4302535.150240/94‑1 (MQ=60)

                                           AACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGG                                                    <  SRR4302535.4261355/94‑1 (MQ=60)

                                            ACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGT                                                   <  SRR4302535.2512982/94‑1 (MQ=60)

                                            ACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGT                                                   <  SRR4302535.1978958/94‑1 (MQ=60)

                                             CTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTG                                                  >  SRR4302535.4237178/1‑94 (MQ=60)

                                             CTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTG                                                  <  SRR4302535.118463/94‑1 (MQ=60)

                                                CTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCA                                               >  SRR4302535.2721981/1‑94 (MQ=60)

                                                   TCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCA                                            >  SRR4302535.1247949/1‑94 (MQ=60)

                                                   TCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCA                                            >  SRR4302535.428412/1‑94 (MQ=60)

                                                    CACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAG                                           <  SRR4302535.2927054/94‑1 (MQ=60)

                                                       CGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGT                                        >  SRR4302535.2571747/1‑94 (MQ=60)

                                                       CGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGT                                        >  SRR4302535.1155358/1‑94 (MQ=60)

                                                        GTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTA                                       >  SRR4302535.1963834/1‑94 (MQ=60)

                                                        GTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTA                                       >  SRR4302535.2157716/1‑94 (MQ=60)

                                                          TTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGA                                     >  SRR4302535.3159089/1‑94 (MQ=60)

                                                           TGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGAC                                    <  SRR4302535.2550474/94‑1 (MQ=60)

                                                            TCCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACC                                   <  SRR4302535.3001904/94‑1 (MQ=60)

                                                             CCAGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCG                                  >  SRR4302535.2954012/1‑94 (MQ=60)

                                                               AGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTC                                <  SRR4302535.4118637/94‑1 (MQ=60)

                                                               AGTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTC                                >  SRR4302535.2113090/1‑94 (MQ=60)

                                                                GTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCT                               >  SRR4302535.2364106/1‑94 (MQ=60)

                                                                GTTTTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCT                               <  SRR4302535.3053349/94‑1 (MQ=60)

                                                                   TTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGT                            <  SRR4302535.1418333/94‑1 (MQ=60)

                                                                   TTGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGG                            >  SRR4302535.51405/1‑94 (MQ=60)

                                                                    TGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTG                           >  SRR4302535.1995640/1‑94 (MQ=60)

                                                                    TGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTG                           >  SRR4302535.2633062/1‑94 (MQ=60)

                                                                    TGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTG                           <  SRR4302535.1573306/94‑1 (MQ=60)

                                                                    TGATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTG                           <  SRR4302535.3082617/94‑1 (MQ=60)

                                                                      ATGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGAC                         <  SRR4302535.4295816/94‑1 (MQ=60)

                                                                       TGAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACG                        <  SRR4302535.3592100/94‑1 (MQ=60)

                                                                        GAAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGT                       >  SRR4302535.2589943/1‑94 (MQ=60)

                                                                         AAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTT                      <  SRR4302535.4461543/94‑1 (MQ=60)

                                                                         AAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTT                      <  SRR4302535.2441381/94‑1 (MQ=60)

                                                                         AAAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTT                      >  SRR4302535.3336042/1‑94 (MQ=60)

                                                                          AAGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTG                     <  SRR4302535.3930275/94‑1 (MQ=60)

                                                                           AGCGCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGG                    <  SRR4302535.1001999/94‑1 (MQ=60)

                                                                            GCGCCCTGACCGGCGACCCCATTCCGGTGGAGCGCGCACCGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGA                   <  SRR4302535.4099623/94‑1 (MQ=60)

                                                                              GCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAG                 <  SRR4302535.2393589/94‑1 (MQ=60)

                                                                              GCCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAG                 <  SRR4302535.2824322/94‑1 (MQ=60)

                                                                               CCCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGG                >  SRR4302535.3587944/1‑94 (MQ=60)

                                                                                CCTGACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGGGACGTTGGAAGCG               >  SRR4302535.4359005/1‑94 (MQ=60)

                                                                                    ACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGT           >  SRR4302535.2834883/1‑94 (MQ=60)

                                                                                    ACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGT           <  SRR4302535.3569366/94‑1 (MQ=60)

                                                                                    ACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGT           <  SRR4302535.2567080/94‑1 (MQ=60)

                                                                                    ACCGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGT           <  SRR4302535.2345819/94‑1 (MQ=60)

                                                                                      CGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCA         >  SRR4302535.3600433/1‑94 (MQ=60)

                                                                                      CGGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCA         <  SRR4302535.4266257/94‑1 (MQ=60)

                                                                                       GGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAG        >  SRR4302535.1870681/1‑94 (MQ=60)

                                                                                       GGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAG        >  SRR4302535.218988/1‑94 (MQ=60)

                                                                                       GGCGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAG        >  SRR4302535.2387517/1‑94 (MQ=60)

                                                                                         CGAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAA      >  SRR4302535.2134851/1‑94 (MQ=60)

                                                                                          GAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAAC     >  SRR4302535.3782499/1‑94 (MQ=60)

                                                                                          GAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAAC     <  SRR4302535.3497834/94‑1 (MQ=60)

                                                                                          GAACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAAC     <  SRR4302535.886672/94‑1 (MQ=60)

                                                                                           AACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACC    >  SRR4302535.2720216/1‑94 (MQ=60)

                                                                                           AACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACC    >  SRR4302535.3569160/1‑94 (MQ=60)

                                                                                            ACCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCG   >  SRR4302535.3167516/1‑94 (MQ=60)

                                                                                             CCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGG  <  SRR4302535.4484069/94‑1 (MQ=60)

                                                                                             CCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGAAGTTGGAAGTGCTGTCAGAAGCGG  >  SRR4302535.1122563/1‑94 (MQ=60)

GTGATTGAAGTCGCCGCAGGTGGGCGTTTGCCTGCCGACGGTAAACTGCTCTCACCGTTTGCCAGTTTTGATGAAAGCGCCCTGACCGGCGAATCCATTCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGG  >  NC_000913/3604859‑3605045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`