Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,624,135	A→G	N100N (AAT→AAC)	b3485 ←	putative transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,624,135	0	A	G	100.0%	804.0 / NA	249	N100N (AAT→AAC)	b3485	putative transporter
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (130/119); total (130/119)

Only 100 of 261 total aligned reads displayed.

AAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATATTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATA  >  NC_000913/3624045‑3624224

 aaTGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGttt                                                                                        >  1:292899/1‑93 (MQ=255)

  aTGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGCAAATTAGGGGGAATGTTTa                                                                                       >  1:2896798/1‑93 (MQ=255)

  aTGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTa                                                                                       <  1:753393/93‑1 (MQ=255)

  aTGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTa                                                                                       >  1:4174089/1‑93 (MQ=255)

   tGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTAt                                                                                      <  2:2104730/93‑1 (MQ=255)

   tGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTAt                                                                                      >  1:64399/1‑93 (MQ=255)

    gCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATc                                                                                     <  1:129762/93‑1 (MQ=255)

    gCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATc                                                                                     <  2:2379134/93‑1 (MQ=255)

    gCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATc                                                                                     <  2:3813327/93‑1 (MQ=255)

    gCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATc                                                                                     >  1:3683878/1‑93 (MQ=255)

      cTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATcgc                                                                                   <  1:3253475/93‑1 (MQ=255)

        ggCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGa                                                                                 <  2:2962693/93‑1 (MQ=255)

         gCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGaa                                                                                <  1:3893629/93‑1 (MQ=255)

         gCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGaa                                                                                <  1:2615984/93‑1 (MQ=255)

         gCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGaa                                                                                <  2:46424/93‑1 (MQ=255)

         gCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGaa                                                                                <  1:2038417/93‑1 (MQ=255)

         gCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGaa                                                                                <  1:4357139/93‑1 (MQ=255)

          cTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAg                                                                               >  2:651309/1‑93 (MQ=255)

          cTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAg                                                                               <  2:2439975/93‑1 (MQ=255)

           tCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAgg                                                                              >  1:3260864/1‑93 (MQ=255)

           tCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGAGGAATGTTTATCGCGAAgg                                                                              >  1:1556722/1‑93 (MQ=255)

            cATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGt                                                                             <  2:166058/93‑1 (MQ=255)

            cATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGt                                                                             >  2:3099102/1‑93 (MQ=255)

            cATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGt                                                                             >  1:3175578/1‑93 (MQ=255)

            cATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGt                                                                             <  1:2579463/93‑1 (MQ=255)

              tGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGtat                                                                           <  2:340684/93‑1 (MQ=255)

              tGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGtat                                                                           >  1:1681320/1‑93 (MQ=255)

              tGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGtat                                                                           <  1:3997100/93‑1 (MQ=255)

               gcgcGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGtata                                                                          <  2:3740023/93‑1 (MQ=255)

               gcgcGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGtata                                                                          <  2:1183316/93‑1 (MQ=255)

                cgcgTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAg                                                                         <  2:1946848/93‑1 (MQ=255)

                cgcgTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAg                                                                         <  1:2102152/93‑1 (MQ=255)

                 gcgTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGc                                                                        >  1:1750629/1‑93 (MQ=255)

                 gcgTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGc                                                                        <  2:2040935/93‑1 (MQ=255)

                  cgTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCg                                                                       >  2:2902668/1‑93 (MQ=255)

                   gTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGt                                                                      <  2:3530110/93‑1 (MQ=255)

                    tGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTc                                                                     <  1:1002488/93‑1 (MQ=255)

                    tGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTc                                                                     >  2:931902/1‑93 (MQ=255)

                     ggCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTcc                                                                    <  2:389917/93‑1 (MQ=255)

                      gCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCg                                                                   <  2:1308784/93‑1 (MQ=255)

                      gCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCg                                                                   >  1:945327/1‑93 (MQ=255)

                         tCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCg                                                                >  2:75147/1‑93 (MQ=255)

                          cGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGt                                                               >  1:990712/1‑93 (MQ=255)

                           gACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTc                                                              >  2:3943673/1‑93 (MQ=255)

                            aCGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTcc                                                             <  2:1924096/93‑1 (MQ=255)

                              gTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAg                                                           >  2:804318/1‑93 (MQ=255)

                              gTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAg                                                           >  1:2154758/1‑93 (MQ=255)

                               ttCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGt                                                          >  2:2149389/1‑93 (MQ=255)

                               ttCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGt                                                          >  1:3522904/1‑93 (MQ=255)

                                  aCCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCg                                                       >  2:4118363/1‑93 (MQ=255)

                                  aCCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCg                                                       >  2:1180663/1‑93 (MQ=255)

                                    cTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGc                                                     >  1:3849221/1‑93 (MQ=255)

                                     tGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGAGAAGGTATAGCGTCCGGCGTCCAGTCCGGca                                                    >  1:1129726/1‑93 (MQ=255)

                                       aaTATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGcatc                                                  <  2:1259825/93‑1 (MQ=255)

                                        atatCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGcatcc                                                 >  2:2512550/1‑93 (MQ=255)

                                        atatCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGcatcc                                                 <  2:2326085/93‑1 (MQ=255)

                                        atatCCGGCTGGCGTACGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGcatcc                                                 <  2:4161546/93‑1 (MQ=255)

                                         tatCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGcatcca                                                >  2:3189486/1‑93 (MQ=255)

                                         tatCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGcatcca                                                >  1:2326520/1‑93 (MQ=255)

                                              ggCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCa                                           <  1:820186/93‑1 (MQ=255)

                                              ggCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCa                                           <  1:300029/93‑1 (MQ=255)

                                              ggCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAAGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCa                                           >  2:3327709/1‑93 (MQ=255)

                                               gCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCAt                                          <  2:111910/93‑1 (MQ=255)

                                                cTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATc                                         <  2:2789813/93‑1 (MQ=255)

                                                     gTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATcggcgg                                    <  2:3660876/93‑1 (MQ=255)

                                                          gCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGatc                               >  2:4527546/1‑93 (MQ=255)

                                                          gCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGatc                               <  2:2361638/93‑1 (MQ=255)

                                                           cagggACATCACGCTGAAAATTAGGAGGAATGTTAATCGCGAAAGTAAAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGatca                              <  2:362815/90‑1 (MQ=255)

                                                             aGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGatcatc                            >  2:1376308/1‑93 (MQ=255)

                                                              ggACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCAtct                           <  1:1817479/93‑1 (MQ=255)

                                                              ggACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCAtct                           >  1:3098834/1‑93 (MQ=255)

                                                                 cATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCg                        >  2:3042258/1‑93 (MQ=255)

                                                                 cATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCg                        <  1:2730499/93‑1 (MQ=255)

                                                                 cATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATACTCTCCg                        >  1:160934/1‑93 (MQ=255)

                                                                 cATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGCATAGCGTCCGGCGTACAGGCAGGCATCCATCTCATCGGCGGGGATCATATCCg                        >  1:3484663/1‑93 (MQ=255)

                                                                  aTCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCgg                       <  1:1317797/93‑1 (MQ=255)

                                                                   tCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGt                      <  2:2742438/93‑1 (MQ=255)

                                                                   tCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGt                      <  1:865969/93‑1 (MQ=255)

                                                                    cACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTg                     >  1:3431917/1‑93 (MQ=255)

                                                                       gCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCa                  >  1:4480914/1‑93 (MQ=255)

                                                                       gCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCa                  >  1:2537918/1‑93 (MQ=255)

                                                                        cTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCaa                 >  2:4550671/1‑93 (MQ=255)

                                                                        cTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCaa                 <  2:1758151/93‑1 (MQ=255)

                                                                         tGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCaaa                >  2:4051005/1‑93 (MQ=255)

                                                                           aaaaTTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCaaaaa              <  2:1538588/93‑1 (MQ=255)

                                                                           aaaaTTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCaaaaa              >  1:2253752/1‑93 (MQ=255)

                                                                            aaaTTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAAc             <  2:1862022/93‑1 (MQ=255)

                                                                            aaaTTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAAc             >  2:4341466/1‑93 (MQ=255)

                                                                             aaTTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAAcc            >  1:4467004/1‑93 (MQ=255)

                                                                             aaTTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAAcc            >  1:4223908/1‑93 (MQ=255)

                                                                             aaTTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAAcc            >  1:3573283/1‑93 (MQ=255)

                                                                               ttAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCAc          <  2:1704736/93‑1 (MQ=255)

                                                                               tgaGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCAc          <  1:1918035/91‑1 (MQ=255)

                                                                                  ggCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGGAAAAACCACGGa       >  2:1593200/1‑93 (MQ=255)

                                                                                  ggCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGa       <  1:471337/93‑1 (MQ=255)

                                                                                  ggCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGa       <  2:2228761/93‑1 (MQ=255)

                                                                                  ggCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGa       <  2:481228/93‑1 (MQ=255)

                                                                                   gCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGAc      <  2:2588994/93‑1 (MQ=255)

                                                                                     ggAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGa    <  1:2455336/93‑1 (MQ=255)

                                                                                     ggAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATACATCTCATCGGCGGTGATCATCTCCGGCGGCAAAAACCACGGACGa    >  2:295005/1‑93 (MQ=255)

AAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATATTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATA  >  NC_000913/3624045‑3624224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGTAAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATATTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGAAG  >  NC_000913/3624042‑3624228

GGTAAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATG                                                                                               >  SRR4302535.3295966/1‑94 (MQ=60)

GGTAAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATG                                                                                               <  SRR4302535.1505743/94‑1 (MQ=60)

 GTAAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGT                                                                                              >  SRR4302535.3432651/1‑94 (MQ=60)

 GTAAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGT                                                                                              <  SRR4302535.1542999/94‑1 (MQ=60)

 GTAAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGT                                                                                              >  SRR4302535.1395161/1‑94 (MQ=60)

 GTAAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGT                                                                                              >  SRR4302535.3132441/1‑94 (MQ=60)

  TAAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTT                                                                                             <  SRR4302535.594744/94‑1 (MQ=60)

  TAAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTT                                                                                             >  SRR4302535.3015793/1‑94 (MQ=60)

   AAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTT                                                                                            >  SRR4302535.294947/1‑94 (MQ=60)

   AAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTT                                                                                            <  SRR4302535.1839881/94‑1 (MQ=60)

   AAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTT                                                                                            >  SRR4302535.2875439/1‑94 (MQ=60)

    AATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGCAAATTAGGGGGAATGTTTA                                                                                           >  SRR4302535.2917283/1‑94 (MQ=60)

    AATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTA                                                                                           >  SRR4302535.4202656/1‑94 (MQ=60)

     ATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTAT                                                                                          <  SRR4302535.51932/94‑1 (MQ=60)

     ATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTAT                                                                                          <  SRR4302535.758697/94‑1 (MQ=60)

     ATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTAT                                                                                          <  SRR4302535.870739/94‑1 (MQ=60)

     ATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTAT                                                                                          >  SRR4302535.64884/1‑94 (MQ=60)

      TGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATC                                                                                         <  SRR4302535.2746976/94‑1 (MQ=60)

      TGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATC                                                                                         <  SRR4302535.1775545/94‑1 (MQ=60)

      TGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATC                                                                                         >  SRR4302535.3709367/1‑94 (MQ=60)

       GCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCG                                                                                        >  SRR4302535.2633560/1‑94 (MQ=60)

       GCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCG                                                                                        <  SRR4302535.130676/94‑1 (MQ=60)

        CCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGC                                                                                       >  SRR4302535.3908191/1‑94 (MQ=60)

         CTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCG                                                                                      >  SRR4302535.3883398/1‑94 (MQ=60)

         CTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCG                                                                                      <  SRR4302535.3276079/94‑1 (MQ=60)

          TGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGA                                                                                     >  SRR4302535.2584877/1‑94 (MQ=60)

           GGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAA                                                                                    <  SRR4302535.3792547/94‑1 (MQ=60)

           GGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAA                                                                                    <  SRR4302535.4205043/94‑1 (MQ=60)

            GCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAG                                                                                   <  SRR4302535.2053096/94‑1 (MQ=60)

            GCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAG                                                                                   <  SRR4302535.4386966/94‑1 (MQ=60)

            GCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAG                                                                                   <  SRR4302535.3920317/94‑1 (MQ=60)

            GCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAG                                                                                   <  SRR4302535.2634742/94‑1 (MQ=60)

             CTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATTGCGAAGG                                                                                  >  SRR4302535.810796/1‑94 (MQ=60)

             CTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGG                                                                                  >  SRR4302535.1121324/1‑94 (MQ=60)

             CTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGG                                                                                  >  SRR4302535.2002212/1‑94 (MQ=60)

             CTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGG                                                                                  >  SRR4302535.3283522/1‑94 (MQ=60)

             CTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGG                                                                                  <  SRR4302535.1677792/94‑1 (MQ=60)

             CTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGAGGAATGTTTATCGCGAAGG                                                                                  >  SRR4302535.1567944/1‑94 (MQ=60)

             CTCATGCGCGTGGCATCGACGTTCACCTAAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGG                                                                                  >  SRR4302535.2315446/1‑94 (MQ=60)

              TCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGT                                                                                 >  SRR4302535.1592931/1‑94 (MQ=60)

              TCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGT                                                                                 >  SRR4302535.3197554/1‑94 (MQ=60)

               CATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTA                                                                                <  SRR4302535.2597997/94‑1 (MQ=60)

               CATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTA                                                                                >  SRR4302535.3589399/1‑94 (MQ=60)

                ATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTAT                                                                               <  SRR4302535.323572/94‑1 (MQ=60)

                ATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTAT                                                                               <  SRR4302535.3446977/94‑1 (MQ=60)

                ATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTAT                                                                               >  SRR4302535.1693496/1‑94 (MQ=60)

                 TGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATA                                                                              <  SRR4302535.4024447/94‑1 (MQ=60)

                 TGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATA                                                                              >  SRR4302535.4575583/1‑94 (MQ=60)

                  GCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAG                                                                             <  SRR4302535.3572325/94‑1 (MQ=60)

                  GCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAG                                                                             <  SRR4302535.4680344/94‑1 (MQ=60)

                   CGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGC                                                                            <  SRR4302535.2117314/94‑1 (MQ=60)

                   CGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGC                                                                            >  SRR4302535.1763289/1‑94 (MQ=60)

                    GCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCG                                                                           >  SRR4302535.2969953/1‑94 (MQ=60)

                    GCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCG                                                                           <  SRR4302535.3096645/94‑1 (MQ=60)

                     CGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGT                                                                          >  SRR4302535.2118328/1‑94 (MQ=60)

                       TGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCC                                                                        <  SRR4302535.1009607/94‑1 (MQ=60)

                        GGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCG                                                                       >  SRR4302535.952021/1‑94 (MQ=60)

                        GGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCG                                                                       <  SRR4302535.3223525/94‑1 (MQ=60)

                           ATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCG                                                                    >  SRR4302535.447762/1‑94 (MQ=60)

                           ATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCG                                                                    >  SRR4302535.3351656/1‑94 (MQ=60)

                            TCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGT                                                                   >  SRR4302535.997745/1‑94 (MQ=60)

                            TCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGT                                                                   <  SRR4302535.1711599/94‑1 (MQ=60)

                                CGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAG                                                               >  SRR4302535.4321426/1‑94 (MQ=60)

                                CGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAG                                                               >  SRR4302535.2170242/1‑94 (MQ=60)

                                 GTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGT                                                              >  SRR4302535.3547370/1‑94 (MQ=60)

                                 GTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGT                                                              <  SRR4302535.1581218/94‑1 (MQ=60)

                                  TTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTC                                                             >  SRR4302535.718901/1‑94 (MQ=60)

                                   TCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCC                                                            <  SRR4302535.1366182/94‑1 (MQ=60)

                                   TCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCC                                                            <  SRR4302535.1227350/94‑1 (MQ=60)

                                    CACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCG                                                           <  SRR4302535.4450198/94‑1 (MQ=60)

                                     ACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGG                                                          <  SRR4302535.431378/94‑1 (MQ=60)

                                      CCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGC                                                         >  SRR4302535.3875711/1‑94 (MQ=60)

                                      CCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGC                                                         <  SRR4302535.2540670/94‑1 (MQ=60)

                                       CTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCA                                                        >  SRR4302535.3513648/1‑94 (MQ=60)

                                       CTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCA                                                        >  SRR4302535.2596725/1‑94 (MQ=60)

                                       CTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGAGAAGGTATAGCGTCCGGCGTCCAGTCCGGCA                                                        >  SRR4302535.1137792/1‑94 (MQ=60)

                                        TGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGGATAGCGTCCGGCGTCCAGGCCGGCAT                                                       >  SRR4302535.99415/1‑94 (MQ=60)

                                         GAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATC                                                      >  SRR4302535.1997173/1‑94 (MQ=60)

                                          AATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCC                                                     <  SRR4302535.4077404/94‑1 (MQ=60)

                                           ATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCA                                                    >  SRR4302535.2343166/1‑94 (MQ=60)

                                            TATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCAT                                                   <  SRR4302535.3462645/94‑1 (MQ=60)

                                             ATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATC                                                  >  SRR4302535.2744723/1‑94 (MQ=60)

                                                CGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCA                                               >  SRR4302535.2922811/1‑94 (MQ=60)

                                                 GGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCAT                                              <  SRR4302535.825941/94‑1 (MQ=60)

                                                 GGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCAT                                              <  SRR4302535.302120/94‑1 (MQ=60)

                                                       CGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGG                                        >  SRR4302535.87525/1‑94 (MQ=60)

                                                        GTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCTGCGGT                                       >  SRR4302535.3132408/1‑94 (MQ=60)

                                                         TCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTG                                      <  SRR4302535.4424446/94‑1 (MQ=60)

                                                         GCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTG                                      <  SRR4302535.3506439/94‑1 (MQ=60)

                                                          CCGGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGA                                     <  SRR4302535.565027/94‑1 (MQ=60)

                                                            GGCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATC                                   >  SRR4302535.994480/1‑94 (MQ=60)

                                                             GCGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCNNTCATCTCATCGGCGNTNGNCA                                  >  SRR4302535.1844631/1‑94 (MQ=60)

                                                              CGAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCAT                                 >  SRR4302535.1714959/1‑94 (MQ=60)

                                                               GAGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATC                                >  SRR4302535.2163703/1‑94 (MQ=60)

                                                                AGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCT                               <  SRR4302535.3280571/94‑1 (MQ=60)

                                                                AGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCT                               <  SRR4302535.934213/94‑1 (MQ=60)

                                                                AGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCT                               >  SRR4302535.2270845/1‑94 (MQ=60)

                                                                AGGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCT                               >  SRR4302535.3120411/1‑94 (MQ=60)

                                                                 GGACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTC                              <  SRR4302535.1830613/94‑1 (MQ=60)

                                                                  GACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCGTCCATCTCATCGGCGGTGATCATCTCC                             >  SRR4302535.3722146/1‑94 (MQ=60)

                                                                   ACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCG                            >  SRR4302535.1168048/1‑94 (MQ=60)

                                                                   ACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATACTCTCCG                            >  SRR4302535.162062/1‑94 (MQ=60)

                                                                   ACATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGCATAGCGTCCGGCGTACAGGCAGGCATCCATCTCATCGGCGGGGATCATATCCG                            >  SRR4302535.3508856/1‑94 (MQ=60)

                                                                    CATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGG                           <  SRR4302535.2749989/94‑1 (MQ=60)

                                                                    CATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGG                           <  SRR4302535.780168/94‑1 (MQ=60)

                                                                     ATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGT                          <  SRR4302535.1327210/94‑1 (MQ=60)

                                                                     ATCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGT                          <  SRR4302535.1327211/94‑1 (MQ=60)

                                                                      TCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTG                         >  SRR4302535.3455767/1‑94 (MQ=60)

                                                                      TCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTG                         <  SRR4302535.2466547/94‑1 (MQ=60)

                                                                      TCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTG                         >  SRR4302535.3958808/1‑94 (MQ=60)

                                                                      TCACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTG                         <  SRR4302535.872088/94‑1 (MQ=60)

                                                                        ACGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGGGGC                       >  SRR4302535.2455306/1‑94 (MQ=60)

                                                                         CGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCA                      >  SRR4302535.4511671/1‑94 (MQ=60)

                                                                         CGCTGAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCA                      >  SRR4302535.2556200/1‑94 (MQ=60)

                                                                             GAAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAA                  >  SRR4302535.2269804/1‑94 (MQ=60)

                                                                              AAAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAAC                 >  SRR4302535.289493/1‑94 (MQ=60)

                                                                               AAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACC                >  SRR4302535.3598060/1‑94 (MQ=60)

                                                                               AAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACC                >  SRR4302535.4497652/1‑94 (MQ=60)

                                                                               AAATTAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACC                >  SRR4302535.4252811/1‑94 (MQ=60)

                                                                                AATTAGTCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCA               <  SRR4302535.309290/94‑1 (MQ=60)

                                                                                  TGAGGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACG             <  SRR4302535.1931857/94‑1 (MQ=60)

                                                                                     GGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGAC          <  SRR4302535.4509649/94‑1 (MQ=60)

                                                                                     GGCGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGAC          <  SRR4302535.474635/94‑1 (MQ=60)

                                                                                       CGGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGA        >  SRR4302535.210773/1‑94 (MQ=60)

                                                                                        GGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGAT       <  SRR4302535.1495486/94‑1 (MQ=60)

                                                                                        GGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGAT       >  SRR4302535.2198976/1‑94 (MQ=60)

                                                                                        GGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGAT       <  SRR4302535.2473038/94‑1 (MQ=60)

                                                                                        GGAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGAA       >  SRR4302535.3658493/1‑94 (MQ=60)

                                                                                         GAATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATA      <  SRR4302535.4110933/94‑1 (MQ=60)

                                                                                          AATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAG     >  SRR4302535.4626782/1‑94 (MQ=60)

                                                                                           ATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGA    >  SRR4302535.1828437/1‑94 (MQ=60)

                                                                                           ATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGA    <  SRR4302535.1918850/94‑1 (MQ=60)

                                                                                           ATGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATAATCTCCGGTGGCAAAAACCACGGAGGATAGA    >  SRR4302535.1120095/1‑94 (MQ=60)

                                                                                            TGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGAA   >  SRR4302535.1443092/1‑94 (MQ=60)

                                                                                            TGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGAA   >  SRR4302535.2787849/1‑94 (MQ=60)

                                                                                            TGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGAA   <  SRR4302535.1246016/94‑1 (MQ=60)

                                                                                            TGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGAA   >  SRR4302535.2321615/1‑94 (MQ=60)

                                                                                            TGTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGAGAGAA   >  SRR4302535.2141729/1‑94 (MQ=60)

                                                                                             GTTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGAAG  <  SRR4302535.1741428/94‑1 (MQ=60)

GGTAAATGCCTGGCTCATGCGCGTGGCATCGACGTTCACCTGAATATCCGGCTGGCGTCCGGCGAGGACATCACGCTGAAAATTAGGCGGAATATTTATCGCGAAGGTATAGCGTCCGGCGTCCAGTCCGGCATCCATCTCATCGGCGGTGATCATCTCCGGTGGCAAAAACCACGGACGATAGAAG  >  NC_000913/3624042‑3624228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`