Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,648,042	T→C	L59P (CTG→CCG)	arsC →	arsenate reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,648,042	0	T	C	100.0%	745.8 / NA	238	L59P (CTG→CCG)	arsC	arsenate reductase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (100/138); total (100/138)

Only 100 of 266 total aligned reads displayed.

CGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCTGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCACC  >  NC_000913/3647952‑3648131

 gACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCcgcg                                                                                        >  2:2200131/1‑93 (MQ=255)

  aCTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGt                                                                                       >  2:1821136/1‑93 (MQ=255)

   cTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTa                                                                                      >  2:1262493/1‑93 (MQ=255)

    tattatCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTaa                                                                                     >  2:3360687/1‑93 (MQ=255)

      ttatCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTaaaa                                                                                   <  2:1484420/93‑1 (MQ=255)

       tatCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTaaaaa                                                                                  >  1:266330/1‑93 (MQ=255)

       tatCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTaaaaa                                                                                  <  1:3270390/93‑1 (MQ=255)

        atCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAAc                                                                                 >  1:3786118/1‑93 (MQ=255)

        atCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAAc                                                                                 >  2:2220865/1‑93 (MQ=255)

        atCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAAc                                                                                 <  2:160245/93‑1 (MQ=255)

         tCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACg                                                                                >  1:4287752/1‑93 (MQ=255)

          ccATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGt                                                                               <  2:3809007/93‑1 (MQ=255)

           cATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTc                                                                              >  2:4083046/1‑93 (MQ=255)

             ttATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGa                                                                            >  2:1559088/1‑93 (MQ=255)

             ttATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGa                                                                            <  1:2755317/93‑1 (MQ=255)

              tATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGaa                                                                           <  2:4521064/93‑1 (MQ=255)

                tCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAAcc                                                                         >  2:2516318/1‑93 (MQ=255)

                tCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGGAAAAACGTCGAAcc                                                                         >  1:1517822/1‑93 (MQ=255)

                 cTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCg                                                                        <  2:2110352/93‑1 (MQ=255)

                 cTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCg                                                                        >  2:830463/1‑93 (MQ=255)

                   ggAACCTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTa                                                                      <  2:2814782/93‑1 (MQ=255)

                   ggAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTa                                                                      >  1:4520493/1‑93 (MQ=255)

                   ggAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTa                                                                      >  2:1864134/1‑93 (MQ=255)

                   ggAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTa                                                                      <  1:4434044/93‑1 (MQ=255)

                   ggAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTa                                                                      >  2:2602644/1‑93 (MQ=255)

                    gAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTAt                                                                     >  2:3134453/1‑93 (MQ=255)

                      aaCTCCGCCAACGCGCGATGAACTGGTCAAATTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATga                                                                   <  2:1143313/93‑1 (MQ=255)

                      aaCTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATga                                                                   <  1:3664399/93‑1 (MQ=255)

                      aaCTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATga                                                                   <  2:743759/93‑1 (MQ=255)

                      aaCTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATga                                                                   <  1:1116767/93‑1 (MQ=255)

                         tCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATgagga                                                                <  2:3738146/93‑1 (MQ=255)

                           cGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGc                                                              <  2:3173442/93‑1 (MQ=255)

                           cGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGc                                                              >  1:4186493/1‑93 (MQ=255)

                              cAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTgg                                                           <  2:1932987/93‑1 (MQ=255)

                              cAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTgg                                                           <  2:2674251/93‑1 (MQ=255)

                              cAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTgg                                                           <  2:671243/93‑1 (MQ=255)

                              cAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTgg                                                           <  2:1442701/93‑1 (MQ=255)

                                aCGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGCCGAACCGTATGAGGAGCTGGGc                                                         >  1:1153502/1‑93 (MQ=255)

                                 cgcgcgATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGcc                                                        <  2:1722378/93‑1 (MQ=255)

                                  gcgcgATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCt                                                       <  2:4136932/93‑1 (MQ=255)

                                  gcgcgATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCt                                                       <  1:369846/93‑1 (MQ=255)

                                    gcgATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTg                                                     <  1:2425195/93‑1 (MQ=255)

                                    gcgATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAACTGGGCCTTg                                                     >  2:1010045/1‑93 (MQ=255)

                                     cgATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTTCGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGCGCTGGGCCTTGc                                                    >  1:3304162/1‑93 (MQ=255)

                                     cgATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGc                                                    <  1:4086123/93‑1 (MQ=255)

                                      gATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCg                                                   <  1:533909/93‑1 (MQ=255)

                                          aaCTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAg                                               >  2:3856771/1‑93 (MQ=255)

                                          aaCTGGTCAAACCCACTGCCGATATGGGTATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAg                                               <  1:2314798/93‑1 (MQ=255)

                                           aCTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGa                                              <  1:3977003/93‑1 (MQ=255)

                                            cTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGAt                                             <  1:4053816/93‑1 (MQ=255)

                                             tGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATa                                            <  1:3943465/93‑1 (MQ=255)

                                             tGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATa                                            <  1:1863846/93‑1 (MQ=255)

                                             tGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATa                                            >  1:1708708/1‑93 (MQ=255)

                                             tGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATa                                            <  1:1646533/93‑1 (MQ=255)

                                               gTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATaaa                                          <  2:3234890/93‑1 (MQ=255)

                                                 cAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAAtt                                        <  1:79582/93‑1 (MQ=255)

                                                  aaaCTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAAttt                                       <  1:3390194/93‑1 (MQ=255)

                                                   aaCTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTa                                      <  2:3383966/93‑1 (MQ=255)

                                                    aCTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTAc                                     <  2:4467852/93‑1 (MQ=255)

                                                    aCTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTAc                                     <  2:4635950/93‑1 (MQ=255)

                                                      tCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTg                                   >  1:4676739/1‑93 (MQ=255)

                                                      tCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTg                                   <  2:510243/93‑1 (MQ=255)

                                                      tCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTg                                   >  1:854725/1‑93 (MQ=255)

                                                       cATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGa                                  <  1:102155/93‑1 (MQ=255)

                                                       cATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGa                                  <  1:3689666/93‑1 (MQ=255)

                                                        aTTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGAc                                 >  2:630318/1‑93 (MQ=255)

                                                        aTTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGAc                                 >  2:490621/1‑93 (MQ=255)

                                                          tGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGa                               <  2:2323787/93‑1 (MQ=255)

                                                          tGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGa                               <  2:2483361/93‑1 (MQ=255)

                                                            ccGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATc                             <  2:2428531/93‑1 (MQ=255)

                                                            ccGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATc                             <  1:1293603/93‑1 (MQ=255)

                                                            ccGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATc                             <  2:2164252/93‑1 (MQ=255)

                                                              gATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCgg                           >  1:3547154/1‑93 (MQ=255)

                                                               atatGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGt                          <  2:4313447/93‑1 (MQ=255)

                                                                  tGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTaa                       >  1:2188786/1‑93 (MQ=255)

                                                                  tGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTaa                       <  2:539796/93‑1 (MQ=255)

                                                                   ggggATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAAt                      <  2:2893893/93‑1 (MQ=255)

                                                                    gggATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGATGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATc                     >  2:1046242/1‑93 (MQ=255)

                                                                    gggATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAGGATAAATTTACTGACGATCGGTTAATc                     >  2:1752294/1‑93 (MQ=255)

                                                                       aTTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGAc                  <  2:3542794/93‑1 (MQ=255)

                                                                        tttCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACt                 >  1:2651586/1‑93 (MQ=255)

                                                                         ttCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTGTGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACtt                >  1:839399/1‑93 (MQ=255)

                                                                           ccGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTa              <  1:625568/93‑1 (MQ=255)

                                                                            cGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTAt             <  1:2867060/93‑1 (MQ=255)

                                                                             gTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATg            <  1:3502499/93‑1 (MQ=255)

                                                                              tACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGc           >  2:786356/1‑93 (MQ=255)

                                                                                cgcgcgCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCtt         >  2:4148329/1‑93 (MQ=255)

                                                                                 gcgcgcTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTc        <  1:2961581/93‑1 (MQ=255)

                                                                                 gcgcgcTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTc        >  1:2121194/1‑93 (MQ=255)

                                                                                 gcgcgcTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTc        <  2:166678/93‑1 (MQ=255)

                                                                                 gcgcgcTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTc        <  1:505058/93‑1 (MQ=255)

                                                                                  cgcgcTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCa       <  2:864156/93‑1 (MQ=255)

                                                                                   gcgcTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAg      >  1:2848053/1‑93 (MQ=255)

                                                                                    cgcTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGc     <  1:191341/93‑1 (MQ=255)

                                                                                     gctgccGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCa    >  1:135035/1‑93 (MQ=255)

                                                                                      ctgccgCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCAc   <  2:1186626/93‑1 (MQ=255)

                                                                                      ctgccgCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCAc   >  1:918965/1‑93 (MQ=255)

                                                                                       tgccgcGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCAcc  >  2:3745755/1‑93 (MQ=255)

                                                                                       tgccgcGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCAcc  >  2:3296999/1‑93 (MQ=255)

                                                                                       tgcagcGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCAcc  >  2:3993345/1‑93 (MQ=255)

CGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCTGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCACC  >  NC_000913/3647952‑3648131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AACCGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCTGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCACCCGAT  >  NC_000913/3647949‑3648135

AACCGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCC                                                                                               <  SRR4302535.1098010/94‑1 (MQ=60)

AACCGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCC                                                                                               >  SRR4302535.1493818/1‑94 (MQ=60)

 ACCTATTATTATCCTTTATCTGGAACCCCCCCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCG                                                                                              <  SRR4302535.4467682/94‑1 (MQ=60)

 ACCGACTATTATCTATTATCTGAAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCG                                                                                              <  SRR4302535.4467681/94‑1 (MQ=60)

 ACCGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCG                                                                                              >  SRR4302535.4234970/1‑94 (MQ=60)

 ACCGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCG                                                                                              >  SRR4302535.736516/1‑94 (MQ=60)

  CCGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGC                                                                                             >  SRR4302535.2862160/1‑94 (MQ=60)

   CGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCG                                                                                            >  SRR4302535.4302723/1‑94 (MQ=60)

     ACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTA                                                                                          <  SRR4302535.2218417/94‑1 (MQ=60)

      CTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGCTATGGGGATTTCCGTACGCGCGCTGCCGCGTAA                                                                                         >  SRR4302535.35712/1‑94 (MQ=60)

       TATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAA                                                                                        >  SRR4302535.3315296/1‑94 (MQ=60)

        ATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAA                                                                                       >  SRR4302535.4089579/1‑94 (MQ=60)

        ATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAA                                                                                       <  SRR4302535.2195257/94‑1 (MQ=60)

        ATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAA                                                                                       >  SRR4302535.1711404/1‑94 (MQ=60)

         TTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAA                                                                                      >  SRR4302535.2880337/1‑94 (MQ=60)

         TTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAA                                                                                      >  SRR4302535.268181/1‑94 (MQ=60)

          TATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAAC                                                                                     <  SRR4302535.1363935/94‑1 (MQ=60)

          TATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAAC                                                                                     >  SRR4302535.3703984/1‑94 (MQ=60)

          TATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAAC                                                                                     <  SRR4302535.3293107/94‑1 (MQ=60)

          TATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAAC                                                                                     >  SRR4302535.3812234/1‑94 (MQ=60)

           ATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACG                                                                                    >  SRR4302535.4317086/1‑94 (MQ=60)

            TCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGT                                                                                   <  SRR4302535.437345/94‑1 (MQ=60)

             CCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTC                                                                                  <  SRR4302535.791781/94‑1 (MQ=60)

              CATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCG                                                                                 >  SRR4302535.4573384/1‑94 (MQ=60)

              CATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCG                                                                                 >  SRR4302535.3487883/1‑94 (MQ=60)

               ATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGA                                                                                >  SRR4302535.591731/1‑94 (MQ=60)

                TTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAA                                                                               >  SRR4302535.3711955/1‑94 (MQ=60)

                TTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAA                                                                               <  SRR4302535.2774957/94‑1 (MQ=60)

                 TATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAAC                                                                              >  SRR4302535.1246085/1‑94 (MQ=60)

                  ATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACC                                                                             <  SRR4302535.3464500/94‑1 (MQ=60)

                  ATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACC                                                                             >  SRR4302535.864794/1‑94 (MQ=60)

                  ATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGGAAAAACGTCGAACC                                                                             >  SRR4302535.1528756/1‑94 (MQ=60)

                     TGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTA                                                                          >  SRR4302535.4551475/1‑94 (MQ=60)

                      GGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTAT                                                                         <  SRR4302535.4464426/94‑1 (MQ=60)

                      GGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTAT                                                                         <  SRR4302535.3720593/94‑1 (MQ=60)

                        AAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGA                                                                       <  SRR4302535.1910336/94‑1 (MQ=60)

                         AACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAG                                                                      <  SRR4302535.1124731/94‑1 (MQ=60)

                         AACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAG                                                                      <  SRR4302535.1133020/94‑1 (MQ=60)

                         AACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAG                                                                      <  SRR4302535.3689769/94‑1 (MQ=60)

                         AACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAG                                                                      <  SRR4302535.1130010/94‑1 (MQ=60)

                            TCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAG                                                                   <  SRR4302535.1312702/94‑1 (MQ=60)

                             CCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGC                                                                  >  SRR4302535.4215145/1‑94 (MQ=60)

                              CGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCT                                                                 >  SRR4302535.1587118/1‑94 (MQ=60)

                               GCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTG                                                                >  SRR4302535.30322/1‑94 (MQ=60)

                                CCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGG                                                               <  SRR4302535.845893/94‑1 (MQ=60)

                                  AACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTGCGTACGCGCGTTGCCGCGTAAAAACGTCGACCCGTCTGAGGCGCTGGGC                                                             >  SRR4302535.4027000/1‑94 (MQ=60)

                                  AACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGCCGAACCGTATGAGGAGCTGGGC                                                             >  SRR4302535.1161749/1‑94 (MQ=60)

                                    CGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCT                                                           >  SRR4302535.3080941/1‑94 (MQ=60)

                                     GCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTT                                                          >  SRR4302535.4675438/1‑94 (MQ=60)

                                     GCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTT                                                          <  SRR4302535.372404/94‑1 (MQ=60)

                                      CGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGGCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTG                                                         >  SRR4302535.658498/1‑94 (MQ=60)

                                      CGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTG                                                         <  SRR4302535.4194865/94‑1 (MQ=60)

                                       GCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTTCGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGCGCTGGGCCTTGC                                                        >  SRR4302535.3327142/1‑94 (MQ=60)

                                       GCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGC                                                        <  SRR4302535.2442669/94‑1 (MQ=60)

                                        CGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCTTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCG                                                       <  SRR4302535.2177585/94‑1 (MQ=60)

                                        CGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCG                                                       <  SRR4302535.481263/94‑1 (MQ=60)

                                        CGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCG                                                       <  SRR4302535.4114081/94‑1 (MQ=60)

                                        CGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCG                                                       >  SRR4302535.3808474/1‑94 (MQ=60)

                                         GATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGG                                                      <  SRR4302535.537643/94‑1 (MQ=60)

                                         GATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGG                                                      >  SRR4302535.3997370/1‑94 (MQ=60)

                                            GAACTGGGCGAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGGATGAGGAGCTGGGCCTTGCGGAAG                                                   <  SRR4302535.2764611/94‑1 (MQ=60)

                                             AACTGGTCAAACCCACTGCCGATATGGGTATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGA                                                  <  SRR4302535.2331360/94‑1 (MQ=60)

                                              ACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGAT                                                 <  SRR4302535.4004174/94‑1 (MQ=60)

                                               CTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATA                                                <  SRR4302535.4081574/94‑1 (MQ=60)

                                               CTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATA                                                >  SRR4302535.1721062/1‑94 (MQ=60)

                                               CTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATA                                                >  SRR4302535.2380896/1‑94 (MQ=60)

                                                TGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAA                                               <  SRR4302535.3970387/94‑1 (MQ=60)

                                                TGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAA                                               <  SRR4302535.1658432/94‑1 (MQ=60)

                                                TGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAA                                               <  SRR4302535.1877287/94‑1 (MQ=60)

                                                 GGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAA                                              <  SRR4302535.2678003/94‑1 (MQ=60)

                                                  GTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAAT                                             >  SRR4302535.265045/1‑94 (MQ=60)

                                                   TCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATT                                            <  SRR4302535.295735/94‑1 (MQ=60)

                                                    CAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTT                                           <  SRR4302535.80150/94‑1 (MQ=60)

                                                    CAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTT                                           >  SRR4302535.1069700/1‑94 (MQ=60)

                                                    CAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTT                                           >  SRR4302535.3399958/1‑94 (MQ=60)

                                                     AAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTA                                          >  SRR4302535.613353/1‑94 (MQ=60)

                                                     AAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTA                                          <  SRR4302535.3413779/94‑1 (MQ=60)

                                                        CTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTG                                       >  SRR4302535.860748/1‑94 (MQ=60)

                                                        CTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTG                                       >  SRR4302535.4708305/1‑94 (MQ=60)

                                                        CTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTG                                       <  SRR4302535.4085809/94‑1 (MQ=60)

                                                         TCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGCATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGA                                      >  SRR4302535.4334135/1‑94 (MQ=60)

                                                          CATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGAC                                     <  SRR4302535.3605805/94‑1 (MQ=60)

                                                          CATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGAC                                     <  SRR4302535.3715205/94‑1 (MQ=60)

                                                          CATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGAC                                     <  SRR4302535.102874/94‑1 (MQ=60)

                                                           ATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACG                                    <  SRR4302535.1869018/94‑1 (MQ=60)

                                                             TGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGAT                                  <  SRR4302535.932717/94‑1 (MQ=60)

                                                             TGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGAT                                  <  SRR4302535.169154/94‑1 (MQ=60)

                                                              GCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATC                                 <  SRR4302535.4059352/94‑1 (MQ=60)

                                                              GCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATC                                 >  SRR4302535.2103781/1‑94 (MQ=60)

                                                               CCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCG                                <  SRR4302535.1302821/94‑1 (MQ=60)

                                                                CGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGG                               >  SRR4302535.3571781/1‑94 (MQ=60)

                                                                  ATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTT                             >  SRR4302535.379472/1‑94 (MQ=60)

                                                                    ATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAA                           >  SRR4302535.2204374/1‑94 (MQ=60)

                                                                     TGGGCATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGACGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAAT                          <  SRR4302535.3589460/94‑1 (MQ=60)

                                                                      GGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATC                         <  SRR4302535.859512/94‑1 (MQ=60)

                                                                       GGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCG                        <  SRR4302535.530844/94‑1 (MQ=60)

                                                                          ATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACT                     >  SRR4302535.2670581/1‑94 (MQ=60)

                                                                           TTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTGTGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTT                    >  SRR4302535.845294/1‑94 (MQ=60)

                                                                           TTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTT                    <  SRR4302535.3378068/94‑1 (MQ=60)

                                                                            TTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTT                   >  SRR4302535.2951770/1‑94 (MQ=60)

                                                                              CCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTAT                 <  SRR4302535.2832035/94‑1 (MQ=60)

                                                                              CCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTAT                 <  SRR4302535.629919/94‑1 (MQ=60)

                                                                              CCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTAT                 <  SRR4302535.3869379/94‑1 (MQ=60)

                                                                              CCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTAT                 <  SRR4302535.1786661/94‑1 (MQ=60)

                                                                              CCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTAT                 <  SRR4302535.3882127/94‑1 (MQ=60)

                                                                               CGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATG                <  SRR4302535.2887369/94‑1 (MQ=60)

                                                                               CGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATG                <  SRR4302535.263297/94‑1 (MQ=60)

                                                                               CGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATC                >  SRR4302535.2344329/1‑94 (MQ=60)

                                                                                GTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGC               >  SRR4302535.4285784/1‑94 (MQ=60)

                                                                                GTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGC               >  SRR4302535.904581/1‑94 (MQ=60)

                                                                                GTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGC               <  SRR4302535.3526844/94‑1 (MQ=60)

                                                                                 TACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCT              <  SRR4302535.1524178/94‑1 (MQ=60)

                                                                                 TACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCT              <  SRR4302535.1325282/94‑1 (MQ=60)

                                                                                  ACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTT             >  SRR4302535.506820/1‑94 (MQ=60)

                                                                                   CGCGCGCTGCCGCGTAAAAAGGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTC            <  SRR4302535.2083395/94‑1 (MQ=60)

                                                                                   CGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTC            >  SRR4302535.2136489/1‑94 (MQ=60)

                                                                                    GCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCA           <  SRR4302535.508589/94‑1 (MQ=60)

                                                                                    GCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCA           <  SRR4302535.2982370/94‑1 (MQ=60)

                                                                                     CGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAG          >  SRR4302535.2868238/1‑94 (MQ=60)

                                                                                       CGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGCAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGac        >  SRR4302535.246371/1‑92 (MQ=60)

                                                                                       CGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCA        <  SRR4302535.822952/94‑1 (MQ=60)

                                                                                       CGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCA        >  SRR4302535.135978/1‑94 (MQ=60)

                                                                                       CGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCA        <  SRR4302535.192664/94‑1 (MQ=60)

                                                                                        GCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCAC       <  SRR4302535.4478913/94‑1 (MQ=60)

                                                                                        GCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCAC       >  SRR4302535.925481/1‑94 (MQ=60)

                                                                                        GCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCAC       <  SRR4302535.2731289/94‑1 (MQ=60)

                                                                                          TGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGCTAATCGACTTTATGCTTCAGCACCC     >  SRR4302535.2385241/1‑94 (MQ=60)

                                                                                             CGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCACCCGAT  >  SRR4302535.2893249/1‑94 (MQ=60)

AACCGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCTGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCACCCGAT  >  NC_000913/3647949‑3648135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`