Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,704,229 |
(T)5→4 |
coding (1106/1608 nt) |
dppA ← |
dipeptide transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,704,225 | 0 | T | . | 100.0%
| 1008.2
/ NA
| 219 | coding (1110/1608 nt) | dppA | dipeptide transport protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (113/106); total (113/106) |
Only 100 of 259 total aligned reads displayed.
GCCCAGTCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCTTTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGG > NC_000913/3704133‑3704313
|
cccAGTCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCtt < 2:2566180/93‑1 (MQ=255)
ccAGTCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCttt > 1:4042624/1‑93 (MQ=255)
ccAGTCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCttt > 1:4390176/1‑93 (MQ=255)
cAGTCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCtttt < 2:4101731/93‑1 (MQ=255)
cAGTCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCtttt > 2:1246466/1‑93 (MQ=255)
aGTCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCttttc > 2:2715515/1‑92 (MQ=255)
aGTCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCttttc > 2:2136492/1‑92 (MQ=255)
aGTCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCttttc < 2:1656064/93‑2 (MQ=255)
tCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCttttcca < 1:3551810/93‑4 (MQ=255)
cTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCttttccag > 2:1514843/1‑89 (MQ=255)
gCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGAc < 1:2223635/93‑1 (MQ=255)
ccTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGAcc > 1:3186467/1‑93 (MQ=255)
cTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGAccc < 2:4416330/93‑1 (MQ=255)
aaTCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGct < 1:1868093/93‑1 (MQ=255)
aaTCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGct < 1:4145334/93‑1 (MQ=255)
atcatcTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGctt < 1:1672773/93‑1 (MQ=255)
atcatcTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGctt < 1:3333751/93‑1 (MQ=255)
atcatcTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGctt > 1:2169206/1‑93 (MQ=255)
tcatcTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGcttc > 1:2185544/1‑93 (MQ=255)
tcatcTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGcttc > 1:2695616/1‑93 (MQ=255)
tcatcTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGcttc > 2:3635115/1‑93 (MQ=255)
tcatcTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGcttc < 1:3582628/93‑1 (MQ=255)
catcTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGcttct < 2:593433/93‑1 (MQ=255)
catcTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGcttct < 1:4106897/93‑1 (MQ=255)
catcTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGcttct < 2:4286460/93‑1 (MQ=255)
tctcCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACTCGCTTCttt > 2:3764067/1‑93 (MQ=255)
gCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCa > 1:3899579/1‑93 (MQ=255)
ccATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCaa < 2:685317/93‑1 (MQ=255)
cATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAg > 1:3961924/1‑93 (MQ=255)
cATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAg > 2:3276271/1‑93 (MQ=255)
tGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGc < 2:1321612/93‑1 (MQ=255)
gcggcgAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCt < 2:3908291/93‑1 (MQ=255)
gcggcgAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCt < 2:1601131/93‑1 (MQ=255)
gcggcgAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCt < 2:466578/93‑1 (MQ=255)
cgAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCg < 2:4051531/93‑1 (MQ=255)
aGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCt > 2:3723812/1‑93 (MQ=255)
gCGTTCGGGTTATACGGACGTTGTGCCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCCAGGCTTTCGCtt > 2:4519653/1‑93 (MQ=255)
cGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCttt < 2:998377/93‑1 (MQ=255)
gTTCGGGTTATCCGGACGTTGTACCGGCATCGCCCTCAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCtttt > 2:1168110/1‑93 (MQ=255)
gTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCtttt > 1:1473825/1‑93 (MQ=255)
gTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCtttt < 2:4606314/93‑1 (MQ=255)
ttCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCTAGGCTTTCGCttttt > 2:3651988/1‑93 (MQ=255)
ttCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCttttt < 1:2128675/93‑1 (MQ=255)
ttCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCttttt > 1:3656213/1‑93 (MQ=255)
ttCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGAACCGCTTCTTTCAGCAAGGCTTTCGCttttt > 1:2940267/1‑93 (MQ=255)
tCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTc < 1:2780018/93‑1 (MQ=255)
tCGGGTTATACGCACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTc < 1:714289/93‑1 (MQ=255)
tgggTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCa < 1:3241181/92‑1 (MQ=255)
gggTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAg < 2:1890174/93‑1 (MQ=255)
gggTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAg < 1:1962753/93‑1 (MQ=255)
gggTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAg < 1:4623403/93‑1 (MQ=255)
gggTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAg < 2:3369143/93‑1 (MQ=255)
ttATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGAt < 1:1850917/93‑1 (MQ=255)
ataCGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCg < 1:3461595/93‑1 (MQ=255)
taCGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGt > 2:4641668/1‑93 (MQ=255)
taCGGACGTTGTACCGGCATCGCCCACAGGACGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGt > 2:2817906/1‑93 (MQ=255)
aCGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTa > 1:2374777/1‑93 (MQ=255)
gACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGgt > 1:1806739/1‑93 (MQ=255)
cGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGgtgt < 2:2212541/93‑1 (MQ=255)
cGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGgtgt < 1:4507096/93‑1 (MQ=255)
cGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGgtgt > 1:3384591/1‑93 (MQ=255)
gTTGTACCGGCATCGCCCACAGGTCGATTGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTa < 1:2893072/93‑1 (MQ=255)
ttGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAg > 1:2467102/1‑93 (MQ=255)
tACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTcc < 1:4669236/93‑1 (MQ=255)
aCCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCt < 2:1967000/93‑1 (MQ=255)
cGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGa > 1:2106567/1‑93 (MQ=255)
ggCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGaa < 2:1061044/93‑1 (MQ=255)
gCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAAc < 1:4173594/93‑1 (MQ=255)
cATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAAcg < 1:2066413/93‑1 (MQ=255)
aTCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAAcgt > 2:2893526/1‑93 (MQ=255)
aTCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAAcgt < 1:564078/93‑1 (MQ=255)
aTCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAAcgt > 1:979515/1‑93 (MQ=255)
tCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAAcgtc > 2:772236/1‑93 (MQ=255)
tCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAAcgtc > 1:3808217/1‑93 (MQ=255)
gCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAAcgtcgt < 2:837031/93‑1 (MQ=255)
gCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAAcgtcgt > 2:3142887/1‑93 (MQ=255)
gCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAAcgtcgt < 2:3519406/93‑1 (MQ=255)
cacaGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAAcgtcgtcgt < 2:2321457/93‑1 (MQ=255)
acaGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGtt > 2:1196884/1‑93 (MQ=255)
acaGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGtt > 2:822659/1‑93 (MQ=255)
acaGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGtt > 2:4362621/1‑93 (MQ=255)
caGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTta < 1:3148321/93‑1 (MQ=255)
aGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTtat > 1:1106404/1‑93 (MQ=255)
gTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAg < 1:4356959/93‑1 (MQ=255)
tCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGc < 2:2378171/93‑1 (MQ=255)
tCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGc > 2:3846462/1‑93 (MQ=255)
tCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGc > 1:3115333/1‑93 (MQ=255)
aTGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGcccc > 1:636718/1‑93 (MQ=255)
tGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCca < 2:1428879/93‑1 (MQ=255)
ggAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCcac < 1:1141130/93‑1 (MQ=255)
gagaAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCcaca < 1:1016470/93‑1 (MQ=255)
gagaAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCcaca > 2:1234711/1‑93 (MQ=255)
gagaAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCcaca < 1:2804239/93‑1 (MQ=255)
gagaAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCcaca > 2:3007383/1‑93 (MQ=255)
agaAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACAt < 2:1693469/93‑1 (MQ=255)
gaAACC‑TTTTCCAGACCCGCTTCTTTCGGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATg > 1:1263335/1‑93 (MQ=255)
gaAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATg > 1:1404384/1‑93 (MQ=255)
aaaaCC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATg < 2:3313889/92‑1 (MQ=255)
aaaCC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATgg > 2:2764212/1‑93 (MQ=255)
aaaCC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATgg < 2:407544/93‑1 (MQ=255)
|
GCCCAGTCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCTTTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGG > NC_000913/3704133‑3704313
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGTCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCTTTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTTGGCGGG > NC_000913/3704136‑3704321
|
CAGTCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCTTTTC > SRR4302535.2916969/1‑94 (MQ=60)
CAGTCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCTTTTC > SRR4302535.4145671/1‑94 (MQ=60)
TCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAG < SRR4302535.1860486/94‑1 (MQ=60)
TCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAG < SRR4302535.1105420/94‑1 (MQ=60)
TCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAG < SRR4302535.3576458/94‑1 (MQ=60)
TCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAG < SRR4302535.4120228/94‑1 (MQ=60)
GCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACC > SRR4302535.3208503/1‑94 (MQ=60)
GCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACC < SRR4302535.2239462/94‑1 (MQ=60)
CCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGAGCC > SRR4302535.2811088/1‑94 (MQ=60)
CCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCC < SRR4302535.2914127/94‑1 (MQ=60)
CCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCC < SRR4302535.4305396/94‑1 (MQ=60)
CCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCC < SRR4302535.4445419/94‑1 (MQ=60)
CCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCC > SRR4302535.2460090/1‑94 (MQ=60)
CTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCG < SRR4302535.2092406/94‑1 (MQ=60)
CTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCG > SRR4302535.179606/1‑94 (MQ=60)
CTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCG > SRR4302535.1131901/1‑94 (MQ=60)
TGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGC < SRR4302535.3753928/94‑1 (MQ=60)
TGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGC > SRR4302535.543036/1‑94 (MQ=60)
AATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTT > SRR4302535.2184745/1‑94 (MQ=60)
AATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTT < SRR4302535.1881556/94‑1 (MQ=60)
AATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTT < SRR4302535.4173720/94‑1 (MQ=60)
ATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTGCAGACCCGCTTC > SRR4302535.3031593/1‑94 (MQ=60)
ATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTC < SRR4302535.3356972/94‑1 (MQ=60)
ATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTC > SRR4302535.2201120/1‑94 (MQ=60)
ATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTC > SRR4302535.1571058/1‑94 (MQ=60)
ATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTC > SRR4302535.2714882/1‑94 (MQ=60)
ATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTC < SRR4302535.1684880/94‑1 (MQ=60)
TCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCT < SRR4302535.3607478/94‑1 (MQ=60)
TCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCT < SRR4302535.4429111/94‑1 (MQ=60)
CATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTT < SRR4302535.4135017/94‑1 (MQ=60)
CATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGCAGAAACC‑TTTTCCAGACCCGCTTCTT > SRR4302535.1259137/1‑94 (MQ=60)
CTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCA < SRR4302535.3571958/94‑1 (MQ=60)
TCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAG < SRR4302535.689385/94‑1 (MQ=60)
CGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCA > SRR4302535.3926292/1‑94 (MQ=60)
CCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAG > SRR4302535.3988981/1‑94 (MQ=60)
CCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAG < SRR4302535.564290/94‑1 (MQ=60)
CGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTT < SRR4302535.3358952/94‑1 (MQ=60)
CGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTT < SRR4302535.2713617/94‑1 (MQ=60)
GCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCG < SRR4302535.3296418/94‑1 (MQ=60)
GAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCT < SRR4302535.3538590/94‑1 (MQ=60)
AGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTT < SRR4302535.377086/94‑1 (MQ=60)
GCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTT < SRR4302535.3927560/94‑1 (MQ=60)
CGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTT > SRR4302535.1484377/1‑94 (MQ=60)
CGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTT > SRR4302535.1322211/1‑94 (MQ=60)
GTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTT > SRR4302535.3681522/1‑94 (MQ=60)
GTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGAACCGCTTCTTTCAGCAAGGCTTTCGCTTTTT > SRR4302535.2960942/1‑94 (MQ=60)
TTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTC < SRR4302535.2144022/94‑1 (MQ=60)
tcgcaTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAATCC‑TTTTCCAGTCCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCA < SRR4302535.1739182/89‑1 (MQ=60)
TCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCA < SRR4302535.2799811/94‑1 (MQ=60)
TCGGGTTATACGCACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCA < SRR4302535.719305/94‑1 (MQ=60)
TGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAG < SRR4302535.3263689/94‑1 (MQ=60)
CGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAG > SRR4302535.2235348/1‑94 (MQ=60)
CGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAG > SRR4302535.3116459/1‑94 (MQ=60)
CGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAG > SRR4302535.281376/1‑94 (MQ=60)
GGGTTATACGGACGTTGTACCGGCATCGCCCATAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGG < SRR4302535.2569109/94‑1 (MQ=60)
GGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGG < SRR4302535.4654804/94‑1 (MQ=60)
GGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGG < SRR4302535.1976907/94‑1 (MQ=60)
GGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGG < SRR4302535.1393230/94‑1 (MQ=60)
GGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGA > SRR4302535.1984693/1‑94 (MQ=60)
TTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATC < SRR4302535.1864255/94‑1 (MQ=60)
TATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCG < SRR4302535.1420926/94‑1 (MQ=60)
ATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGT < SRR4302535.3485663/94‑1 (MQ=60)
ATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGT > SRR4302535.4674236/1‑94 (MQ=60)
TACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTA > SRR4302535.2391836/1‑94 (MQ=60)
TACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTA < SRR4302535.1148602/94‑1 (MQ=60)
ACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAG > SRR4302535.2169349/1‑94 (MQ=60)
CGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGG < SRR4302535.288406/94‑1 (MQ=60)
CGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGG > SRR4302535.319482/1‑94 (MQ=60)
GGACTTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGT < SRR4302535.3301135/94‑1 (MQ=60)
GGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGT > SRR4302535.2027294/1‑94 (MQ=60)
GGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGT > SRR4302535.1819792/1‑94 (MQ=60)
GACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTG > SRR4302535.1719779/1‑94 (MQ=60)
ACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGT > SRR4302535.3408141/1‑94 (MQ=60)
ACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGT < SRR4302535.4176381/94‑1 (MQ=60)
CGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTA > SRR4302535.1373958/1‑94 (MQ=60)
CGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTA < SRR4302535.4152860/94‑1 (MQ=60)
CGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTA < SRR4302535.2336655/94‑1 (MQ=60)
CGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTA < SRR4302535.4538030/94‑1 (MQ=60)
GTTGTACCGGCATCGCCCACAGGTCGATTGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAG < SRR4302535.2913535/94‑1 (MQ=60)
GTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAG < SRR4302535.4273956/94‑1 (MQ=60)
GTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAG > SRR4302535.2778598/1‑94 (MQ=60)
GTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAG > SRR4302535.2484885/1‑94 (MQ=60)
TTGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGT < SRR4302535.2175566/94‑1 (MQ=60)
TGTACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTC > SRR4302535.3968774/1‑94 (MQ=60)
TACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCT < SRR4302535.4700780/94‑1 (MQ=60)
ACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTG > SRR4302535.3247021/1‑94 (MQ=60)
ACCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTG < SRR4302535.2201203/94‑1 (MQ=60)
CCGGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGA > SRR4302535.2121762/1‑94 (MQ=60)
cnncnnnnnnnncngnncnnnnnnnannccntnTCNAGANCCNCNTCTNTNAGCAAGGNTTTCGCNTTNTCNNGATCGTAGGTGTAGTCCTGAA < SRR4302535.1798455/61‑1 (MQ=48)
GGCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAAC > SRR4302535.3591280/1‑94 (MQ=60)
GCATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACG < SRR4302535.4202161/94‑1 (MQ=60)
CATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGT > SRR4302535.3843131/1‑94 (MQ=60)
CATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGT > SRR4302535.4073196/1‑94 (MQ=60)
CATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGT > SRR4302535.986476/1‑94 (MQ=60)
CATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGT < SRR4302535.2081311/94‑1 (MQ=60)
ATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTC < SRR4302535.568029/94‑1 (MQ=60)
ATCGCCCACAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTC > SRR4302535.3834486/1‑94 (MQ=60)
CCCACAGTTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGTTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCG < SRR4302535.4578054/94‑1 (MQ=60)
CAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTAT < SRR4302535.3664360/94‑1 (MQ=60)
CAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTAT > SRR4302535.1114308/1‑94 (MQ=60)
CAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTAT > SRR4302535.3156030/1‑94 (MQ=60)
CAGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTAT < SRR4302535.3170209/94‑1 (MQ=60)
AGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATA > SRR4302535.4401752/1‑94 (MQ=60)
AGGTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATA < SRR4302535.939650/94‑1 (MQ=60)
GTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGC > SRR4302535.3137023/1‑94 (MQ=60)
GTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGC < SRR4302535.4386785/94‑1 (MQ=60)
GTCGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGC > SRR4302535.2353756/1‑94 (MQ=60)
CGATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCC > SRR4302535.643571/1‑94 (MQ=60)
GATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCC > SRR4302535.641158/1‑94 (MQ=60)
ATGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCA > SRR4302535.2198841/1‑94 (MQ=60)
TGGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCAC < SRR4302535.1005783/94‑1 (MQ=60)
GGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACA < SRR4302535.1149263/94‑1 (MQ=60)
GGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACA < SRR4302535.62017/94‑1 (MQ=60)
GGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACA > SRR4302535.3399801/1‑94 (MQ=60)
GGAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACA > SRR4302535.3428962/1‑94 (MQ=60)
GAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACAT < SRR4302535.2824178/94‑1 (MQ=60)
GAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACAT < SRR4302535.1023694/94‑1 (MQ=60)
GAGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACAT > SRR4302535.164178/1‑94 (MQ=60)
AGAAACC‑TTTTCCAGACCCGCTTCTTTCGGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATG > SRR4302535.1272375/1‑94 (MQ=60)
AGAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATG > SRR4302535.1414401/1‑94 (MQ=60)
GAAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGG > SRR4302535.2091572/1‑94 (MQ=60)
AAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGT < SRR4302535.1871567/94‑1 (MQ=60)
AAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGT > SRR4302535.3085911/1‑94 (MQ=60)
AAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGT > SRR4302535.1692282/1‑94 (MQ=60)
AAACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGT > SRR4302535.546863/1‑94 (MQ=60)
AACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTT > SRR4302535.2728497/1‑94 (MQ=60)
AACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTT > SRR4302535.3632339/1‑94 (MQ=60)
AACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTT > SRR4302535.3461763/1‑94 (MQ=60)
AACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTT < SRR4302535.4637437/94‑1 (MQ=60)
ACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTTG > SRR4302535.3635648/1‑94 (MQ=60)
ACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTTG > SRR4302535.1217470/1‑94 (MQ=60)
ACC‑TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTTG < SRR4302535.2909369/94‑1 (MQ=60)
CTTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTTGGC < SRR4302535.4367052/94‑1 (MQ=60)
CTTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTTGGC > SRR4302535.3259311/1‑94 (MQ=60)
CTTTNCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTTGGC < SRR4302535.1469200/94‑1 (MQ=60)
TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTTGGCG < SRR4302535.1422768/94‑1 (MQ=60)
TTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTTGGCG < SRR4302535.3479167/94‑1 (MQ=60)
TTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTTGGCGGG < SRR4302535.3266627/94‑1 (MQ=60)
TTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTTGGCGGG < SRR4302535.943329/94‑1 (MQ=60)
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CAGTCTGCCTGAATCATCTCCGCCATGCGGCGAGCGTTCGGGTTATACGGACGTTGTACCGGCATCGCCCACAGGTCGATGGAGAAACCTTTTTCCAGACCCGCTTCTTTCAGCAAGGCTTTCGCTTTTTCAGGATCGTAGGTGTAGTCCTGAACGTCGTCGTTATAGCCCCACATGGTTGGCGGG > NC_000913/3704136‑3704321
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
