Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,725,180	G→A	I70I (ATC→ATT)	yiaB ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,725,180	0	G	A	99.6%	919.8 / ‑5.7	252	I70I (ATC→ATT)	yiaB	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (105/146); total (105/147)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.09e-01

Only 100 of 256 total aligned reads displayed.

GGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAG  >  NC_000913/3725090‑3725269

gggATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAat                                                                                         <  1:855966/93‑1 (MQ=255)

gggATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAat                                                                                         >  2:4391581/1‑93 (MQ=255)

 ggATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAata                                                                                        >  2:4339281/1‑93 (MQ=255)

 ggATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAata                                                                                        <  1:2502070/93‑1 (MQ=255)

 ggATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAata                                                                                        <  1:2295780/93‑1 (MQ=255)

  gATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAatat                                                                                       <  1:647953/93‑1 (MQ=255)

  gATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAatat                                                                                       <  1:1555067/93‑1 (MQ=255)

     aGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATggg                                                                                    <  1:175999/93‑1 (MQ=255)

        tCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTaa                                                                                 >  1:3588483/1‑93 (MQ=255)

            cATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTaaaaaa                                                                             >  1:743824/1‑93 (MQ=255)

             aTTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTaaaaaaa                                                                            >  2:733769/1‑93 (MQ=255)

             aTTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTaaaaaaa                                                                            <  1:299049/93‑1 (MQ=255)

              tttCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAat                                                                           <  1:4211588/93‑1 (MQ=255)

              tttCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAat                                                                           <  1:3990481/93‑1 (MQ=255)

                tCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAatca                                                                         <  2:2474141/93‑1 (MQ=255)

                 cATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAatcat                                                                        <  2:419139/93‑1 (MQ=255)

                  aTAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAatcatc                                                                       <  1:4285032/93‑1 (MQ=255)

                  aTAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAatcatc                                                                       <  1:3626075/93‑1 (MQ=255)

                  aTAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAatcatc                                                                       >  1:2525795/1‑93 (MQ=255)

                   tAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATcc                                                                      >  2:3817762/1‑93 (MQ=255)

                   tAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATcc                                                                      <  1:3781080/93‑1 (MQ=255)

                    aaGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCa                                                                     <  2:1064911/93‑1 (MQ=255)

                    aaGTATTCACAGTTGCGTTAACAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACGATCAAAAATGGGTAAAAAAATCATCCa                                                                     <  2:2522858/93‑1 (MQ=255)

                     aGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAg                                                                    >  1:593114/1‑93 (MQ=255)

                      gTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGt                                                                   <  2:2764710/93‑1 (MQ=255)

                        aTTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTg                                                                 >  2:3277689/1‑93 (MQ=255)

                         ttGATAGGTGCGTTTAAAACACCGTTAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGc                                                                <  2:4598097/93‑1 (MQ=255)

                         ttGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGc                                                                <  2:3224327/93‑1 (MQ=255)

                         ttGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGc                                                                >  2:3196394/1‑93 (MQ=255)

                           gATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGccc                                                              >  1:2708094/1‑93 (MQ=255)

                            aTAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCg                                                             >  2:1153032/1‑93 (MQ=255)

                            aTAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCg                                                             <  1:1346223/93‑1 (MQ=255)

                             tAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCgg                                                            >  2:1458164/1‑92 (MQ=255)

                             tAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGa                                                            <  1:1871968/93‑1 (MQ=255)

                               ggTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGt                                                          <  1:34074/93‑1 (MQ=255)

                               ggTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGt                                                          >  2:4140648/1‑93 (MQ=255)

                               ggTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGt                                                          >  2:4636419/1‑93 (MQ=255)

                                   cGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGttttt                                                      >  1:3395946/1‑93 (MQ=255)

                                    gTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTc                                                     <  2:1819136/93‑1 (MQ=255)

                                    gTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTc                                                     <  1:3920819/93‑1 (MQ=255)

                                    gTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTc                                                     <  1:4406705/93‑1 (MQ=255)

                                     tttAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCt                                                    <  1:470713/93‑1 (MQ=255)

                                     tttAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCt                                                    >  1:3026110/1‑93 (MQ=255)

                                     tttAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCt                                                    <  1:2789542/93‑1 (MQ=255)

                                      ttAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTg                                                   <  2:1128074/93‑1 (MQ=255)

                                       tAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTgc                                                  <  2:3413500/93‑1 (MQ=255)

                                         aaaCACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTgcgc                                                <  1:1090459/93‑1 (MQ=255)

                                         aaaCACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTgcgc                                                >  1:1984329/1‑93 (MQ=255)

                                           acacCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGa                                              >  1:3252621/1‑93 (MQ=255)

                                           acacCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGa                                              >  2:1625946/1‑93 (MQ=255)

                                            cacCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGaa                                             <  1:4136764/93‑1 (MQ=255)

                                            cacCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGaa                                             <  2:3923526/93‑1 (MQ=255)

                                             acCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAg                                            >  2:3121963/1‑93 (MQ=255)

                                             acCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAg                                            >  1:3206697/1‑93 (MQ=255)

                                             acCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAg                                            <  2:2309756/93‑1 (MQ=255)

                                              ccGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGa                                           <  2:4094639/93‑1 (MQ=255)

                                               cGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGat                                          >  1:2189485/1‑93 (MQ=255)

                                               cGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGat                                          <  1:2604490/93‑1 (MQ=255)

                                                gATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGata                                         >  2:4292601/1‑93 (MQ=255)

                                                gATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGata                                         <  2:191902/93‑1 (MQ=255)

                                                gATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGata                                         <  2:1758120/93‑1 (MQ=255)

                                                gATAAACAAGAGACCGATAGTGAATAACGCAACGAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGata                                         <  1:39653/93‑1 (MQ=255)

                                                    aaCAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCa                                     >  1:4657024/1‑93 (MQ=255)

                                                    aaCAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCa                                     <  2:2994509/93‑1 (MQ=255)

                                                     aCAAGAGCGCGATAGTGATGAACGCAAGTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCAt                                    <  2:1992910/93‑1 (MQ=255)

                                                     aCAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCAt                                    <  1:3842845/93‑1 (MQ=255)

                                                     aCAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCAt                                    >  1:1323037/1‑93 (MQ=255)

                                                      cAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATa                                   <  1:1392316/93‑1 (MQ=255)

                                                      cAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATa                                   <  1:408118/93‑1 (MQ=255)

                                                      cAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATa                                   <  2:1020890/93‑1 (MQ=255)

                                                      cAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATa                                   <  2:3729383/93‑1 (MQ=255)

                                                       aaGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAg                                  >  2:4233878/1‑93 (MQ=255)

                                                       aaGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAg                                  <  2:754709/93‑1 (MQ=255)

                                                        agagACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGt                                 >  1:901341/1‑93 (MQ=255)

                                                         gagaCCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGtt                                >  2:1805300/1‑93 (MQ=255)

                                                         gagaCCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGtt                                <  1:208188/93‑1 (MQ=255)

                                                         gagaCCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGtt                                <  1:345558/93‑1 (MQ=255)

                                                           gaCCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGc                              >  2:2216719/1‑93 (MQ=255)

                                                                aTAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCaaaa                         <  1:1521090/93‑1 (MQ=255)

                                                                aTAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCaaaa                         >  2:881441/1‑93 (MQ=255)

                                                                 tAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAg                        <  1:2698612/93‑1 (MQ=255)

                                                                  aGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGt                       <  2:348309/93‑1 (MQ=255)

                                                                  aGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGt                       <  1:933507/93‑1 (MQ=255)

                                                                  aGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGt                       <  2:2740840/93‑1 (MQ=255)

                                                                     gATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGc                    >  2:2245971/1‑93 (MQ=255)

                                                                     gATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGc                    <  1:1424009/93‑1 (MQ=255)

                                                                       ttAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTg                  <  1:3655225/93‑1 (MQ=255)

                                                                        tAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGt                 <  1:4112428/93‑1 (MQ=255)

                                                                        tAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGt                 <  2:3645958/93‑1 (MQ=255)

                                                                         aaCGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTc                <  2:1354721/93‑1 (MQ=255)

                                                                          aCGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCa               <  2:2914598/93‑1 (MQ=255)

                                                                          aCGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCa               >  1:3433387/1‑93 (MQ=255)

                                                                            gCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCAtt             <  2:2653407/93‑1 (MQ=255)

                                                                            gCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCAtt             <  1:1007242/93‑1 (MQ=255)

                                                                             cAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTa            <  1:2439602/93‑1 (MQ=255)

                                                                              aactaactGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTaa           >  2:1241940/1‑93 (MQ=255)

                                                                                ctaactGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAaca         <  1:2369814/93‑1 (MQ=255)

                                                                                    ctGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGcc     >  1:96557/1‑93 (MQ=255)

                                                                                    ctGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGcc     <  1:1641147/93‑1 (MQ=255)

                                                                                      ggCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCaa   <  2:3574669/93‑1 (MQ=255)

GGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAG  >  NC_000913/3725090‑3725269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAGAAA  >  NC_000913/3725087‑3725272

GATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAA                                                                                              <  SRR4302535.3722875/94‑1 (MQ=60)

 ATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAA                                                                                             >  SRR4302535.3901094/1‑94 (MQ=60)

 ATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAA                                                                                             >  SRR4302535.1871332/1‑94 (MQ=60)

   GGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATA                                                                                           <  SRR4302535.862000/94‑1 (MQ=60)

    GGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATAT                                                                                          <  SRR4302535.2312206/94‑1 (MQ=60)

    GGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATAT                                                                                          <  SRR4302535.2520114/94‑1 (MQ=60)

    GGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATAT                                                                                          <  SRR4302535.1771718/94‑1 (MQ=60)

    GGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATAT                                                                                          >  SRR4302535.3899006/1‑94 (MQ=60)

     GATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATG                                                                                         <  SRR4302535.2579245/94‑1 (MQ=60)

     GATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATG                                                                                         <  SRR4302535.652469/94‑1 (MQ=60)

     GATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATG                                                                                         <  SRR4302535.1566274/94‑1 (MQ=60)

        AGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGT                                                                                      <  SRR4302535.177222/94‑1 (MQ=60)

        AGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGA                                                                                      >  SRR4302535.1538303/1‑94 (MQ=60)

         GATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTA                                                                                     >  SRR4302535.928705/1‑94 (MQ=60)

         GATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTA                                                                                     <  SRR4302535.697714/94‑1 (MQ=60)

          ATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAA                                                                                    >  SRR4302535.4327119/1‑94 (MQ=60)

          ATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAA                                                                                    >  SRR4302535.3613375/1‑94 (MQ=60)

          ATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAA                                                                                    >  SRR4302535.2775107/1‑94 (MQ=60)

            CACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATATACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAA                                                                                  >  SRR4302535.2540274/1‑94 (MQ=60)

            CACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAA                                                                                  <  SRR4302535.3673897/94‑1 (MQ=60)

            CACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAA                                                                                  >  SRR4302535.2207326/1‑94 (MQ=60)

            CACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAA                                                                                  >  SRR4302535.1241552/1‑94 (MQ=60)

             ACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAA                                                                                 <  SRR4302535.4203868/94‑1 (MQ=60)

              CCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAA                                                                                >  SRR4302535.749045/1‑94 (MQ=60)

               CATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAA                                                                               >  SRR4302535.3030711/1‑94 (MQ=60)

                ATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAAT                                                                              <  SRR4302535.3745075/94‑1 (MQ=60)

                ATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAAT                                                                              >  SRR4302535.25027/1‑94 (MQ=60)

                ATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAAT                                                                              <  SRR4302535.301133/94‑1 (MQ=60)

                 TTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATC                                                                             <  SRR4302535.4240414/94‑1 (MQ=60)

                 TTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATC                                                                             <  SRR4302535.4017774/94‑1 (MQ=60)

                   TCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCAT                                                                           <  SRR4302535.3846740/94‑1 (MQ=60)

                    CATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATC                                                                          >  SRR4302535.2543994/1‑94 (MQ=60)

                    CATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATC                                                                          <  SRR4302535.2037149/94‑1 (MQ=60)

                     ATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCC                                                                         <  SRR4302535.4314344/94‑1 (MQ=60)

                     ATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCC                                                                         <  SRR4302535.413136/94‑1 (MQ=60)

                     ATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCC                                                                         <  SRR4302535.3661348/94‑1 (MQ=60)

                     ATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCC                                                                         <  SRR4302535.3651204/94‑1 (MQ=60)

                      TAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCA                                                                        <  SRR4302535.906592/94‑1 (MQ=60)

                      TAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCA                                                                        <  SRR4302535.3807176/94‑1 (MQ=60)

                       AAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAG                                                                       >  SRR4302535.4234620/1‑94 (MQ=60)

                       AAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAG                                                                       >  SRR4302535.597274/1‑94 (MQ=60)

                       AAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAG                                                                       >  SRR4302535.1370767/1‑94 (MQ=60)

                       AAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAG                                                                       <  SRR4302535.4274633/94‑1 (MQ=60)

                         GTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTT                                                                     <  SRR4302535.911838/94‑1 (MQ=60)

                          TATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTG                                                                    <  SRR4302535.3214092/94‑1 (MQ=60)

                           ATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGC                                                                   >  SRR4302535.2751628/1‑94 (MQ=60)

                           ATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGC                                                                   >  SRR4302535.1901514/1‑94 (MQ=60)

                             TGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCC                                                                 <  SRR4302535.74264/94‑1 (MQ=60)

                             TGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCC                                                                 >  SRR4302535.2727446/1‑94 (MQ=60)

                              GATAGGTGCTTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCG                                                                <  SRR4302535.4051418/94‑1 (MQ=60)

                               ATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGA                                                               <  SRR4302535.1355835/94‑1 (MQ=60)

                                TAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAG                                                              <  SRR4302535.1885457/94‑1 (MQ=60)

                                TAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAG                                                              <  SRR4302535.2939851/94‑1 (MQ=60)

                                  GGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTT                                                            <  SRR4302535.34337/94‑1 (MQ=60)

                                   GTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTT                                                           >  SRR4302535.3459893/1‑94 (MQ=60)

                                    TGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTT                                                          >  SRR4302535.946775/1‑94 (MQ=60)

                                     GCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTT                                                         >  SRR4302535.3419571/1‑94 (MQ=60)

                                      CGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTC                                                        <  SRR4302535.3645462/94‑1 (MQ=60)

                                       GTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCT                                                       >  SRR4302535.3117870/1‑94 (MQ=60)

                                       GTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCT                                                       >  SRR4302535.3047296/1‑94 (MQ=60)

                                       GTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCT                                                       <  SRR4302535.4436864/94‑1 (MQ=60)

                                       GTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCT                                                       <  SRR4302535.3947626/94‑1 (MQ=60)

                                       GTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCT                                                       >  SRR4302535.3711576/1‑94 (MQ=60)

                                        TTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTG                                                      <  SRR4302535.977891/94‑1 (MQ=60)

                                        TTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTG                                                      <  SRR4302535.2809394/94‑1 (MQ=60)

                                        TTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTG                                                      <  SRR4302535.474006/94‑1 (MQ=60)

                                         TTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGC                                                     >  SRR4302535.4002019/1‑94 (MQ=60)

                                         TTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGC                                                     >  SRR4302535.2445520/1‑94 (MQ=60)

                                           AAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGC                                                   >  SRR4302535.1998616/1‑94 (MQ=60)

                                            AAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCG                                                  <  SRR4302535.1098230/94‑1 (MQ=60)

                                             AACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGA                                                 >  SRR4302535.3275220/1‑94 (MQ=60)

                                             AACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGA                                                 >  SRR4302535.3561335/1‑94 (MQ=60)

                                               CACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAG                                               <  SRR4302535.1706006/94‑1 (MQ=60)

                                               CACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAG                                               <  SRR4302535.4165090/94‑1 (MQ=60)

                                               CACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAG                                               <  SRR4302535.4009024/94‑1 (MQ=60)

                                               CACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAG                                               >  SRR4302535.3228907/1‑94 (MQ=60)

                                                 CCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGAT                                             <  SRR4302535.3293970/94‑1 (MQ=60)

                                                 CCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGAT                                             >  SRR4302535.2205076/1‑94 (MQ=60)

                                                  CGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATA                                            <  SRR4302535.2623186/94‑1 (MQ=60)

                                                  CGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATA                                            <  SRR4302535.824888/94‑1 (MQ=60)

                                                   GATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATAT                                           <  SRR4302535.475950/94‑1 (MQ=60)

                                                   GATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATAT                                           <  SRR4302535.270418/94‑1 (MQ=60)

                                                   GATAAACAAGAGACCGATAGTGAATAACGCAACGAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATAT                                           <  SRR4302535.39956/94‑1 (MQ=60)

                                                    ATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATG                                          <  SRR4302535.4157778/94‑1 (MQ=60)

                                                      AAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCA                                        >  SRR4302535.3956053/1‑94 (MQ=60)

                                                      AAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCA                                        <  SRR4302535.1499497/94‑1 (MQ=60)

                                                      AAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCA                                        >  SRR4302535.4688535/1‑94 (MQ=60)

                                                       AACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCAT                                       <  SRR4302535.523351/94‑1 (MQ=60)

                                                       AACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCAT                                       >  SRR4302535.1332479/1‑94 (MQ=60)

                                                        ACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATA                                      <  SRR4302535.3869316/94‑1 (MQ=60)

                                                        ACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATA                                      <  SRR4302535.2317071/94‑1 (MQ=60)

                                                        ACAAAAGACCGAAAGTGATTAACGCACCTAACTGGCAAATAGGGGGAAAAAAAGCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATA                                      <  SRR4302535.3869317/94‑1 (MQ=60)

                                                         CAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAG                                     <  SRR4302535.410976/94‑1 (MQ=60)

                                                         CAAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAG                                     <  SRR4302535.1402255/94‑1 (MQ=60)

                                                          AAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGT                                    <  SRR4302535.3438102/94‑1 (MQ=60)

                                                          AAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGT                                    >  SRR4302535.907723/1‑94 (MQ=60)

                                                          AAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGT                                    <  SRR4302535.2138660/94‑1 (MQ=60)

                                                          AAGAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGT                                    <  SRR4302535.3273666/94‑1 (MQ=60)

                                                            GAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTG                                  <  SRR4302535.347937/94‑1 (MQ=60)

                                                            GAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTG                                  <  SRR4302535.1894985/94‑1 (MQ=60)

                                                            GAGACCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTG                                  <  SRR4302535.209618/94‑1 (MQ=60)

                                                               ACTGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCA                               >  SRR4302535.618292/1‑94 (MQ=60)

                                                                CCGATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAA                              <  SRR4302535.2640651/94‑1 (MQ=60)

                                                                  GATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAA                            >  SRR4302535.1528251/1‑94 (MQ=60)

                                                                   ATAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAG                           <  SRR4302535.1532046/94‑1 (MQ=60)

                                                                    TAGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGT                          <  SRR4302535.2717897/94‑1 (MQ=60)

                                                                     AGTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTT                         <  SRR4302535.940111/94‑1 (MQ=60)

                                                                      GTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTG                        >  SRR4302535.3359072/1‑94 (MQ=60)

                                                                      GTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTG                        >  SRR4302535.3579281/1‑94 (MQ=60)

                                                                      GTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTG                        >  SRR4302535.3422511/1‑94 (MQ=60)

                                                                      GTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTG                        <  SRR4302535.1403575/94‑1 (MQ=60)

                                                                      GTGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTG                        <  SRR4302535.1609290/94‑1 (MQ=60)

                                                                       TGATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGC                       >  SRR4302535.1401533/1‑94 (MQ=60)

                                                                        GATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCT                      <  SRR4302535.1434178/94‑1 (MQ=60)

                                                                        GATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCT                      <  SRR4302535.4695185/94‑1 (MQ=60)

                                                                         ATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTG                     >  SRR4302535.832556/1‑94 (MQ=60)

                                                                         ATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTG                     <  SRR4302535.4300084/94‑1 (MQ=60)

                                                                         ATTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTG                     >  SRR4302535.2527810/1‑94 (MQ=60)

                                                                          TTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGT                    <  SRR4302535.3680526/94‑1 (MQ=60)

                                                                          TTAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGT                    <  SRR4302535.163983/94‑1 (MQ=60)

                                                                           TAACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTC                   <  SRR4302535.4140576/94‑1 (MQ=60)

                                                                            AACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCA                  >  SRR4302535.1053037/1‑94 (MQ=60)

                                                                            AACGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCA                  >  SRR4302535.3457245/1‑94 (MQ=60)

                                                                              CGCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATT                >  SRR4302535.3015029/1‑94 (MQ=60)

                                                                               GCAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTA               <  SRR4302535.1014400/94‑1 (MQ=60)

                                                                                CAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCTCGAGATTTTCTGCGCGAAGATATGCATAGTTGCCACAACTTGCTGTCATTAA              >  SRR4302535.217069/1‑94 (MQ=60)

                                                                                CAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAA              <  SRR4302535.2457176/94‑1 (MQ=60)

                                                                                CAACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCC‑AAAGTTGCTGTCATTAAC             >  SRR4302535.3433161/1‑94 (MQ=60)

                                                                                  ACTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACA            >  SRR4302535.2490442/1‑94 (MQ=60)

                                                                                   CTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACAC           <  SRR4302535.2386830/94‑1 (MQ=60)

                                                                                   CTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACAC           <  SRR4302535.4675629/94‑1 (MQ=60)

                                                                                   CTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACAC           <  SRR4302535.4443470/94‑1 (MQ=60)

                                                                                   CTAACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACAC           >  SRR4302535.1339396/1‑94 (MQ=60)

                                                                                    TAACTGACAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACG          <  SRR4302535.1842443/94‑1 (MQ=60)

                                                                                     AACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGC         >  SRR4302535.4110170/1‑94 (MQ=60)

                                                                                      ACTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCC        >  SRR4302535.97240/1‑94 (MQ=60)

                                                                                       CTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCA       <  SRR4302535.1653009/94‑1 (MQ=60)

                                                                                       CTGGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCA       >  SRR4302535.2719915/1‑94 (MQ=60)

                                                                                         GGCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAG     <  SRR4302535.1109495/94‑1 (MQ=60)

                                                                                          GCAAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAGA    <  SRR4302535.2368643/94‑1 (MQ=60)

                                                                                            AAATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAGAAA  >  SRR4302535.2382528/1‑94 (MQ=60)

GATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAACAAGAGACCGATAGTGATTAACGCAACTAACTGGCAGATATGGGTAAAAAAATCATCCAGTTGCCCGAGTTTTTCTGCGCGAAGATATGCATAGTTGCCAAAAGTTGCTGTCATTAACACGCCAAGAAA  >  NC_000913/3725087‑3725272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`