Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,730,104 T→C L92P (CTG→CCG)  xylG → putative ATP‑binding protein of xylose transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,730,1040TC100.0% 877.7 / NA 276L92P (CTG→CCG) xylGputative ATP‑binding protein of xylose transport system
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (143/133);  total (143/133)

Only 100 of 288 total aligned reads displayed.

AAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTAC  >  NC_000913/3730014‑3730193
                                                                                          |                                                                                         
aaaTTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCgg                                                                                         >  1:969257/1‑93 (MQ=255)
 aaTTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGt                                                                                        <  1:1453146/93‑1 (MQ=255)
   ttattTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGTCCCGGTGa                                                                                      >  2:3209781/1‑93 (MQ=255)
   ttattTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGa                                                                                      >  1:3002872/1‑93 (MQ=255)
   ttattTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGa                                                                                      >  1:1706815/1‑93 (MQ=255)
     attTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGaaa                                                                                    <  1:2426083/93‑1 (MQ=255)
        tttGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGaa                                                                                 <  2:3867949/93‑1 (MQ=255)
          tGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAAtt                                                                               <  2:174835/93‑1 (MQ=255)
             gggAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGAc                                                                            <  1:1590831/93‑1 (MQ=255)
              ggAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGAcc                                                                           <  2:1404237/93‑1 (MQ=255)
               gagaAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCg                                                                          <  1:512434/93‑1 (MQ=255)
                agaagaGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGt                                                                         <  1:3894228/93‑1 (MQ=255)
                agaagaGATTCAGGCGAGTCACATCCGCGATACAGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGGAAGAATTGACCGt                                                                         >  2:1476447/1‑93 (MQ=255)
                 gaagaGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTg                                                                        >  2:2756936/1‑93 (MQ=255)
                  aagaGATTCAGGCGAGTGACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGc                                                                       <  2:723540/93‑1 (MQ=255)
                  aagaGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGc                                                                       <  1:4255341/93‑1 (MQ=255)
                   agagATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCt                                                                      >  2:3725821/1‑93 (MQ=255)
                    gagaTTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTg                                                                     >  1:2397813/1‑93 (MQ=255)
                      gaTTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGa                                                                   >  1:4187020/1‑93 (MQ=255)
                        ttCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGaaa                                                                 <  2:4161315/93‑1 (MQ=255)
                         tCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGaaaa                                                                <  2:2699835/93‑1 (MQ=255)
                         tCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGaaaa                                                                <  1:304281/93‑1 (MQ=255)
                            ggCGAGTCTCATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTTGAAAatat                                                             <  1:836458/93‑1 (MQ=255)
                            ggCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAatat                                                             <  2:654311/93‑1 (MQ=255)
                             gCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATc                                                            <  1:2263405/93‑1 (MQ=255)
                             gCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATc                                                            >  2:524732/1‑93 (MQ=255)
                              ggAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCt                                                           <  1:386424/92‑1 (MQ=255)
                               gAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCtt                                                          >  2:3063037/1‑93 (MQ=255)
                                aGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTc                                                         >  1:4623913/1‑93 (MQ=255)
                                aGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTc                                                         >  2:3643800/1‑93 (MQ=255)
                                 gTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTcc                                                        <  2:1268477/93‑1 (MQ=255)
                                 gTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTcc                                                        >  1:1343268/1‑93 (MQ=255)
                                  tCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCt                                                       >  2:4075741/1‑93 (MQ=255)
                                  tCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCt                                                       >  1:2249474/1‑93 (MQ=255)
                                   cacaTCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTg                                                      <  1:4043367/93‑1 (MQ=255)
                                   cacaTCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTg                                                      <  1:117806/93‑1 (MQ=255)
                                   cacaTCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTg                                                      <  2:3480593/93‑1 (MQ=255)
                                    acaTCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTgg                                                     >  2:1839101/1‑93 (MQ=255)
                                    acaTCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTgg                                                     <  2:2452796/93‑1 (MQ=255)
                                    acaTCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTgg                                                     <  1:749480/93‑1 (MQ=255)
                                      aTCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGt                                                   >  2:2355615/1‑93 (MQ=255)
                                       tCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTa                                                  >  1:276264/1‑93 (MQ=255)
                                       tCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTa                                                  >  1:296439/1‑93 (MQ=255)
                                       tCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTa                                                  <  1:1219162/93‑1 (MQ=255)
                                        ccGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTaa                                                 >  2:2986809/1‑93 (MQ=255)
                                         cgcgATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAAc                                                >  2:2546099/1‑93 (MQ=255)
                                         cgcgATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAAc                                                >  2:436443/1‑93 (MQ=255)
                                         cgcgATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAAc                                                <  1:3557256/93‑1 (MQ=255)
                                          gcgATACCGAACGCAAAGGTATAGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACg                                               >  2:3445683/1‑93 (MQ=255)
                                            gATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGaa                                             >  2:2413280/1‑93 (MQ=255)
                                            gATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTGCCTGGGTAACGaa                                             >  1:2678205/1‑93 (MQ=255)
                                             aTACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGaaa                                            >  2:932064/1‑93 (MQ=255)
                                                ccGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATaa                                         <  2:3932749/93‑1 (MQ=255)
                                                  gAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAAcc                                       <  2:1709239/93‑1 (MQ=255)
                                                   aaCGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAAccc                                      >  1:2897786/1‑93 (MQ=255)
                                                     cGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCcac                                    <  1:2613864/93‑1 (MQ=255)
                                                      gCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCcaca                                   <  2:2881388/93‑1 (MQ=255)
                                                      gCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCcaca                                   >  1:1034369/1‑93 (MQ=255)
                                                      gCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCcaca                                   >  1:2529957/1‑93 (MQ=255)
                                                       cAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACaa                                  <  2:2090096/93‑1 (MQ=255)
                                                       cAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACaa                                  >  2:2247942/1‑93 (MQ=255)
                                                       cAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGAACGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACaa                                  >  1:2354800/1‑93 (MQ=255)
                                                        aaaGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAAt                                 >  1:3725773/1‑93 (MQ=255)
                                                        aaaGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAAt                                 >  2:1014225/1‑93 (MQ=255)
                                                         aaGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATg                                <  2:4265194/93‑1 (MQ=255)
                                                          aGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATgg                               >  1:4507331/1‑93 (MQ=255)
                                                           ggTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGc                              <  2:230405/93‑1 (MQ=255)
                                                            gTATCTCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGAACGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCa                             >  2:871068/1‑93 (MQ=255)
                                                            gTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCa                             >  1:932123/1‑93 (MQ=255)
                                                             tATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCAt                            <  2:3289962/93‑1 (MQ=255)
                                                               tCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTa                          >  2:1199244/1‑93 (MQ=255)
                                                               tCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTa                          <  1:3438737/93‑1 (MQ=255)
                                                               tCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTa                          >  2:3365946/1‑93 (MQ=255)
                                                                cGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTAt                         <  2:1129410/93‑1 (MQ=255)
                                                                 gCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATg                        >  2:4324527/1‑93 (MQ=255)
                                                                 gCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATg                        <  2:4656759/93‑1 (MQ=255)
                                                                  ccATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATgg                       <  1:1955238/93‑1 (MQ=255)
                                                                  ccATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATgg                       <  2:3122351/93‑1 (MQ=255)
                                                                   catcatTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGa                      <  1:1005682/93‑1 (MQ=255)
                                                                   catcatTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGa                      <  2:3548978/93‑1 (MQ=255)
                                                                    atcatTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGAt                     >  2:189870/1‑93 (MQ=255)
                                                                    atcatTCATCAGGAATTGGCCCCGGTGAAAGAAGTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGAt                     <  1:3257918/93‑1 (MQ=255)
                                                                      cattcatCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGGAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTCTGGATTa                   >  2:1275961/1‑93 (MQ=255)
                                                                      cattcatCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTa                   <  1:3242798/93‑1 (MQ=255)
                                                                      cattcatCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTa                   >  1:2047857/1‑93 (MQ=255)
                                                                      cattcatCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTa                   <  1:4459405/93‑1 (MQ=255)
                                                                       attcatCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTAt                  >  2:1532114/1‑93 (MQ=255)
                                                                       attcatCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTAt                  <  1:1270659/93‑1 (MQ=255)
                                                                       attcatCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTAt                  <  1:3607442/93‑1 (MQ=255)
                                                                        ttcatCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATg                 >  2:3696787/1‑93 (MQ=255)
                                                                        ttcatCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATg                 <  1:3504635/93‑1 (MQ=255)
                                                                         tcatcaGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGa                >  1:1907083/1‑93 (MQ=255)
                                                                           atcaGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGAcc              <  1:308153/93‑1 (MQ=255)
                                                                            tcaGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCt             >  1:559558/1‑93 (MQ=255)
                                                                            tcaGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCt             <  1:1732022/93‑1 (MQ=255)
                                                                              aGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCtga           >  2:2042994/1‑93 (MQ=255)
                                                                              aGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCtga           >  2:4605880/1‑93 (MQ=255)
                                                                               ggAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCtgat          <  2:218544/93‑1 (MQ=255)
                                                                                   ttGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGacg      <  1:333614/93‑1 (MQ=255)
                                                                                    tGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGacgc     >  1:2106546/1‑93 (MQ=255)
                                                                                          |                                                                                         
AAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTAC  >  NC_000913/3730014‑3730193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCTG  >  NC_000913/3730011‑3730197
                                                                                             |                                                                                             
GCGAAATTATTTTTGCGGGAGAAGAGATCCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCC                                                                                               <  SRR4302535.1883126/94‑1 (MQ=60)
GCGAAATTATTTGTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCC                                                                                               <  SRR4302535.45497/94‑1 (MQ=60)
  GAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGG                                                                                             >  SRR4302535.976141/1‑94 (MQ=60)
   AAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGT                                                                                            >  SRR4302535.2181313/1‑94 (MQ=60)
    AATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTG                                                                                           <  SRR4302535.2052331/94‑1 (MQ=60)
    AATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTG                                                                                           <  SRR4302535.1676139/94‑1 (MQ=60)
    AATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTG                                                                                           <  SRR4302535.1463546/94‑1 (MQ=60)
    AATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTG                                                                                           <  SRR4302535.1909191/94‑1 (MQ=60)
    AATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTG                                                                                           >  SRR4302535.3080305/1‑94 (MQ=60)
     ATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGA                                                                                          >  SRR4302535.1719152/1‑94 (MQ=60)
     ATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGA                                                                                          >  SRR4302535.3023922/1‑94 (MQ=60)
     ATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATAAGGAATTGGCCCCGGTGA                                                                                          <  SRR4302535.2412004/94‑1 (MQ=60)
        ATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAG                                                                                       <  SRR4302535.2443562/94‑1 (MQ=60)
        ATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAA                                                                                       >  SRR4302535.3666459/1‑94 (MQ=60)
           TTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAAT                                                                                    <  SRR4302535.973118/94‑1 (MQ=60)
               CGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAATGAATTGAC                                                                                >  SRR4302535.2906137/1‑94 (MQ=60)
                GGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACC                                                                               <  SRR4302535.1602309/94‑1 (MQ=60)
                  GAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGT                                                                             <  SRR4302535.516017/94‑1 (MQ=60)
                  GAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGT                                                                             <  SRR4302535.334479/94‑1 (MQ=60)
                  GAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGT                                                                             <  SRR4302535.2587166/94‑1 (MQ=60)
                   AGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTG                                                                            <  SRR4302535.3920920/94‑1 (MQ=60)
                     AAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCT                                                                          <  SRR4302535.4284493/94‑1 (MQ=60)
                     AAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCT                                                                          <  SRR4302535.1041100/94‑1 (MQ=60)
                      AGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGACAGAATTGACCGTGCTG                                                                         >  SRR4302535.4215961/1‑94 (MQ=60)
                      AGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTG                                                                         >  SRR4302535.2415054/1‑94 (MQ=60)
                      AGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTG                                                                         >  SRR4302535.4238277/1‑94 (MQ=60)
                      AGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTACCGCCATCATTCATCAGGAATTGGCCCCGGCGAAAGAATTGACCGTGCTG                                                                         >  SRR4302535.2276609/1‑94 (MQ=60)
                       GAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGG                                                                        >  SRR4302535.3227128/1‑94 (MQ=60)
                        AGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGA                                                                       >  SRR4302535.4215675/1‑94 (MQ=60)
                        AGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGA                                                                       >  SRR4302535.3816478/1‑94 (MQ=60)
                        AGATTCAGGCGAGTCACATCCGCGATACCGAAAGCAAAGGTATCGCCATCATTCATCAGGAATTGGTCCCGGTGAAAGAATTGACCGTGCTGGA                                                                       >  SRR4302535.2016641/1‑94 (MQ=60)
                          ATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAA                                                                     >  SRR4302535.2588147/1‑94 (MQ=60)
                          ATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAA                                                                     >  SRR4302535.3577241/1‑94 (MQ=60)
                            TCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAAT                                                                   <  SRR4302535.306393/94‑1 (MQ=60)
                            TCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAAT                                                                   >  SRR4302535.2665145/1‑94 (MQ=60)
                              AGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATAT                                                                 >  SRR4302535.1205221/1‑94 (MQ=60)
                              AGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATAT                                                                 <  SRR4302535.977562/94‑1 (MQ=60)
                              AGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATAT                                                                 >  SRR4302535.4385308/1‑94 (MQ=60)
                               GGCGAGTCTCATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTTGAAAATATC                                                                <  SRR4302535.842327/94‑1 (MQ=60)
                                GCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCT                                                               <  SRR4302535.2279532/94‑1 (MQ=60)
                                GCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCT                                                               >  SRR4302535.4658529/1‑94 (MQ=60)
                                 GGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTT                                                              <  SRR4302535.389110/94‑1 (MQ=60)
                                 CGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTT                                                              <  SRR4302535.3452284/94‑1 (MQ=60)
                                  GAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTC                                                             <  SRR4302535.3043666/94‑1 (MQ=60)
                                  GAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTC                                                             >  SRR4302535.391679/1‑94 (MQ=60)
                                  GAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTC                                                             >  SRR4302535.4655314/1‑94 (MQ=60)
                                  GAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTC                                                             <  SRR4302535.3266641/94‑1 (MQ=60)
                                   AGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCC                                                            >  SRR4302535.1352856/1‑94 (MQ=60)
                                    GTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCT                                                           <  SRR4302535.3622588/94‑1 (MQ=60)
                                    GTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCT                                                           <  SRR4302535.3688249/94‑1 (MQ=60)
                                    GTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCT                                                           >  SRR4302535.2265488/1‑94 (MQ=60)
                                    GTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCT                                                           >  SRR4302535.1252873/1‑94 (MQ=60)
                                     TCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTG                                                          <  SRR4302535.925169/94‑1 (MQ=60)
                                     TCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTG                                                          >  SRR4302535.2503403/1‑94 (MQ=60)
                                     TCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTG                                                          <  SRR4302535.250822/94‑1 (MQ=60)
                                     TCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTG                                                          >  SRR4302535.3010336/1‑94 (MQ=60)
                                      CACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGG                                                         <  SRR4302535.3303888/94‑1 (MQ=60)
                                      CACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGG                                                         <  SRR4302535.4071047/94‑1 (MQ=60)
                                      CACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGG                                                         <  SRR4302535.160056/94‑1 (MQ=60)
                                      CACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGG                                                         >  SRR4302535.2129851/1‑94 (MQ=60)
                                      CACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGG                                                         <  SRR4302535.118633/94‑1 (MQ=60)
                                       ACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGG                                                        <  SRR4302535.754759/94‑1 (MQ=60)
                                       ACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGG                                                        <  SRR4302535.1433322/94‑1 (MQ=60)
                                       ACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGG                                                        <  SRR4302535.3965181/94‑1 (MQ=60)
                                        CATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGT                                                       <  SRR4302535.2010680/94‑1 (MQ=60)
                                         ATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTA                                                      >  SRR4302535.298504/1‑94 (MQ=60)
                                         ATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTA                                                      >  SRR4302535.4330230/1‑94 (MQ=60)
                                         ATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTA                                                      >  SRR4302535.278192/1‑94 (MQ=60)
                                          TCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAA                                                     <  SRR4302535.1227909/94‑1 (MQ=60)
                                          TCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAA                                                     <  SRR4302535.1845287/94‑1 (MQ=60)
                                          TCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAA                                                     <  SRR4302535.1269657/94‑1 (MQ=60)
                                           CCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAAC                                                    >  SRR4302535.2108804/1‑94 (MQ=60)
                                           CCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAAC                                                    >  SRR4302535.4619995/1‑94 (MQ=60)
                                            CGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACG                                                   <  SRR4302535.3581929/94‑1 (MQ=60)
                                              CGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAA                                                 >  SRR4302535.4133628/1‑94 (MQ=60)
                                              CGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTGCCTGGGTAACGAA                                                 >  SRR4302535.2697366/1‑94 (MQ=60)
                                                ATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAAT                                               <  SRR4302535.3859756/94‑1 (MQ=60)
                                                 TACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTTAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATA                                              <  SRR4302535.2643256/94‑1 (MQ=60)
                                                 TACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATA                                              <  SRR4302535.2773756/94‑1 (MQ=60)
                                                 TACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATA                                              <  SRR4302535.2428182/94‑1 (MQ=60)
                                                  acagaactcacaggaATCGCCATCATTCATCAGGAATGGGCCCCGGTGAAATAATGGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAA                                             <  SRR4302535.4513004/79‑1 (MQ=60)
                                                  ACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAA                                             >  SRR4302535.2769017/1‑94 (MQ=60)
                                                    CGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACC                                           <  SRR4302535.1322119/94‑1 (MQ=60)
                                                    CGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACC                                           <  SRR4302535.1511946/94‑1 (MQ=60)
                                                     GAAGGCAAAGGTATCGCCATCGTTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATACCCC                                          <  SRR4302535.1962068/94‑1 (MQ=60)
                                                     GAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCC                                          >  SRR4302535.1291504/1‑94 (MQ=60)
                                                     GAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCC                                          >  SRR4302535.2918280/1‑94 (MQ=60)
                                                      AACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCA                                         >  SRR4302535.527811/1‑94 (MQ=60)
                                                        CGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACA                                       >  SRR4302535.2548187/1‑94 (MQ=60)
                                                        CGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACA                                       >  SRR4302535.1220531/1‑94 (MQ=60)
                                                        CGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACA                                       <  SRR4302535.391903/94‑1 (MQ=60)
                                                        CGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACA                                       <  SRR4302535.2632609/94‑1 (MQ=60)
                                                        CGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACA                                       >  SRR4302535.1041716/1‑94 (MQ=60)
                                                         GCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGAACGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAA                                      >  SRR4302535.2371685/1‑94 (MQ=60)
                                                          CAAATGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAAT                                     <  SRR4302535.3002903/94‑1 (MQ=60)
                                                          CAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAAT                                     <  SRR4302535.1930674/94‑1 (MQ=60)
                                                          CAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAAT                                     >  SRR4302535.210342/1‑94 (MQ=60)
                                                          CAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAAT                                     >  SRR4302535.3751586/1‑94 (MQ=60)
                                                            AAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGG                                   >  SRR4302535.985513/1‑94 (MQ=60)
                                                            AAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGG                                   <  SRR4302535.3467656/94‑1 (MQ=60)
                                                            AAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGG                                   <  SRR4302535.1078880/94‑1 (MQ=60)
                                                            AAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGG                                   >  SRR4302535.4538265/1‑94 (MQ=60)
                                                            AAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGG                                   <  SRR4302535.3279855/94‑1 (MQ=60)
                                                            AAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGG                                   <  SRR4302535.4152129/94‑1 (MQ=60)
                                                              GGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCA                                 >  SRR4302535.938714/1‑94 (MQ=60)
                                                              GGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCA                                 >  SRR4302535.293542/1‑94 (MQ=60)
                                                               GTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCAT                                <  SRR4302535.530383/94‑1 (MQ=60)
                                                                 ATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTA                              >  SRR4302535.3495139/1‑94 (MQ=60)
                                                                  TCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTAT                             <  SRR4302535.3462655/94‑1 (MQ=60)
                                                                   CGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATG                            <  SRR4302535.4048462/94‑1 (MQ=60)
                                                                    GCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGG                           >  SRR4302535.565126/1‑94 (MQ=60)
                                                                    GCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGG                           >  SRR4302535.287977/1‑94 (MQ=60)
                                                                     CCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGA                          <  SRR4302535.1969312/94‑1 (MQ=60)
                                                                      CATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGAT                         >  SRR4302535.3391838/1‑94 (MQ=60)
                                                                      CATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGAT                         >  SRR4302535.3191542/1‑94 (MQ=60)
                                                                      CATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGAT                         <  SRR4302535.1012829/94‑1 (MQ=60)
                                                                       ATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATT                        >  SRR4302535.1690375/1‑94 (MQ=60)
                                                                       ATCATTCATCAGGAATTGGCCCCGGTGAAAGAAGTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATT                        <  SRR4302535.3280556/94‑1 (MQ=60)
                                                                        TCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTA                       >  SRR4302535.507795/1‑94 (MQ=60)
                                                                        TCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTA                       >  SRR4302535.2062600/1‑94 (MQ=60)
                                                                         CATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTAT                      >  SRR4302535.1455653/1‑94 (MQ=60)
                                                                         CATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTAT                      <  SRR4302535.3265323/94‑1 (MQ=60)
                                                                         CATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTAT                      <  SRR4302535.2273237/94‑1 (MQ=60)
                                                                         CATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTAT                      <  SRR4302535.4489987/94‑1 (MQ=60)
                                                                          ATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATG                     <  SRR4302535.1279737/94‑1 (MQ=60)
                                                                          ATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATG                     <  SRR4302535.3632462/94‑1 (MQ=60)
                                                                           TTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGA                    <  SRR4302535.3528990/94‑1 (MQ=60)
                                                                           TTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGA                    >  SRR4302535.1920808/1‑94 (MQ=60)
                                                                           TTCATCAGGAAGTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGA                    <  SRR4302535.307145/94‑1 (MQ=60)
                                                                            TCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGAC                   >  SRR4302535.3573149/1‑94 (MQ=60)
                                                                              ATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCT                 <  SRR4302535.310288/94‑1 (MQ=60)
                                                                              ATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCT                 <  SRR4302535.1130359/94‑1 (MQ=60)
                                                                              ATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCT                 >  SRR4302535.563471/1‑94 (MQ=60)
                                                                               TCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTG                <  SRR4302535.1744542/94‑1 (MQ=60)
                                                                                 AGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGAT              <  SRR4302535.573521/94‑1 (MQ=60)
                                                                                   GAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGA            >  SRR4302535.817170/1‑94 (MQ=60)
                                                                                    AATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGAC           >  SRR4302535.96348/1‑94 (MQ=60)
                                                                                    AATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGAC           <  SRR4302535.795102/94‑1 (MQ=60)
                                                                                     ATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACG          <  SRR4302535.2928080/94‑1 (MQ=60)
                                                                                     ATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACG          <  SRR4302535.905933/94‑1 (MQ=60)
                                                                                      TTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGC         >  SRR4302535.2121741/1‑94 (MQ=60)
                                                                                      TTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGC         <  SRR4302535.335923/94‑1 (MQ=60)
                                                                                       TGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCT        <  SRR4302535.4583432/94‑1 (MQ=60)
                                                                                         GCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTAC      >  SRR4302535.2422103/1‑94 (MQ=60)
                                                                                          CCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACG     <  SRR4302535.17396/94‑1 (MQ=60)
                                                                                          CCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACG     <  SRR4302535.2294097/94‑1 (MQ=60)
                                                                                          CCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACG     <  SRR4302535.2294096/94‑1 (MQ=60)
                                                                                           CCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGC    >  SRR4302535.1874244/1‑94 (MQ=60)
                                                                                            CCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCT   <  SRR4302535.3346741/94‑1 (MQ=60)
                                                                                            CCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCT   <  SRR4302535.1938902/94‑1 (MQ=60)
                                                                                             CGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCTG  >  SRR4302535.2569856/1‑94 (MQ=60)
                                                                                             CGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCTG  <  SRR4302535.2628971/94‑1 (MQ=60)
                                                                                             |                                                                                             
GCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCTG  >  NC_000913/3730011‑3730197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑