Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,749,710 |
T→C |
L30P (CTT→CCT) |
yiaU → |
putative transcriptional regulator LYSR‑type |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,749,710 | 0 | T | C | 100.0%
| 367.8
/ NA
| 114 | L30P (CTT→CCT) | yiaU | putative transcriptional regulator LYSR‑type |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (112/2); total (112/2) |
Only 100 of 117 total aligned reads displayed.
GATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACTTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCAGC > NC_000913/3749621‑3749799
|
gATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTgg > 2:4019964/1‑93 (MQ=255)
gATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTgg > 1:2053081/1‑93 (MQ=255)
tGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCa > 1:291830/1‑93 (MQ=255)
aCAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATc > 1:4197611/1‑93 (MQ=255)
aCAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATc > 2:1500361/1‑93 (MQ=255)
aCAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATc > 2:2283061/1‑93 (MQ=255)
cAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCg > 2:1665973/1‑93 (MQ=255)
aTTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGcaca > 2:4553204/1‑93 (MQ=255)
aCAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGc > 2:894180/1‑93 (MQ=255)
aaCTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCa > 1:1712632/1‑93 (MQ=255)
aCTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCaa > 2:3056699/1‑93 (MQ=255)
cTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAAc > 2:1007076/1‑93 (MQ=255)
cTTAAGAACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCAGCGACTGTACCTAGAATCGCACAGGCCAAc > 1:733702/1‑93 (MQ=255)
ttAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACg > 2:1564906/1‑93 (MQ=255)
gTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAg > 1:211279/1‑93 (MQ=255)
gTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAg > 2:2432715/1‑93 (MQ=255)
tACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGc > 1:3405678/1‑93 (MQ=255)
ccGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCaa > 1:3270399/1‑93 (MQ=255)
cGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCaaa > 2:2177063/1‑93 (MQ=255)
gggAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAat > 2:2123372/1‑93 (MQ=255)
ggAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAata > 1:2589988/1‑93 (MQ=255)
ggAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAata > 2:108573/1‑93 (MQ=255)
ggAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAata > 1:1559405/1‑93 (MQ=255)
gAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAatat > 1:2307111/1‑93 (MQ=255)
gAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAatat > 1:1583281/1‑93 (MQ=255)
aGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATc > 2:191562/1‑93 (MQ=255)
aGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATc > 2:3654559/1‑93 (MQ=255)
aGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATc > 1:4653572/1‑93 (MQ=255)
aGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATc > 1:120189/1‑93 (MQ=255)
gTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCt > 2:939747/1‑93 (MQ=255)
gTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCt > 2:1222347/1‑93 (MQ=255)
gTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCt > 1:1439417/1‑93 (MQ=255)
gTTAAAAATTATCTCGGTAATCGCTGCCAGGGTAAATATCAGGCATTCCACGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAActctct > 2:290696/1‑93 (MQ=255)
ttAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCtt > 2:3884232/1‑93 (MQ=255)
ttAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCtt > 2:847880/1‑93 (MQ=255)
tAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAACAAATATCTTg > 1:13157/1‑93 (MQ=255)
aaaaaTTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGc > 1:3520375/1‑93 (MQ=255)
aaaaTTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCt > 2:4086799/1‑93 (MQ=255)
aaaTTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTg > 2:603369/1‑93 (MQ=255)
aaTTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGa > 1:93865/1‑93 (MQ=255)
ttATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGAtt > 1:3978996/1‑93 (MQ=255)
ttATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGAtt > 1:2930611/1‑93 (MQ=255)
ttATCTCGGGAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGAtt > 2:4138839/1‑93 (MQ=255)
tATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGAttt > 2:256988/1‑93 (MQ=255)
tATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGAttt > 2:41369/1‑93 (MQ=255)
aTCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGAtttt > 2:2978224/1‑93 (MQ=255)
aTCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGCGCGCAAATATCTCGCTGAtttt > 2:304372/1‑93 (MQ=255)
tctcGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTg > 2:2477665/1‑93 (MQ=255)
tctcGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTg > 1:2067415/1‑93 (MQ=255)
tctcGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTg > 2:930736/1‑93 (MQ=255)
tctcGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTg > 1:44911/1‑93 (MQ=255)
tcGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGaa > 2:703710/1‑93 (MQ=255)
ggTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATc > 1:1661837/1‑93 (MQ=255)
ggTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATc > 2:2090158/1‑93 (MQ=255)
tAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCaa > 1:3083632/1‑93 (MQ=255)
aaTCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCaaa > 2:1491459/1‑93 (MQ=255)
aTCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCaaaa > 2:2788980/1‑93 (MQ=255)
aTCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCaaaa > 2:2269691/1‑93 (MQ=255)
tCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAg > 2:4027754/1‑93 (MQ=255)
gCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTg > 2:4437099/1‑93 (MQ=255)
cTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTgg > 2:1696265/1‑93 (MQ=255)
cTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTgg > 1:4426913/1‑93 (MQ=255)
tGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTggg > 2:2152098/1‑93 (MQ=255)
tGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTggg > 1:3498379/1‑93 (MQ=255)
tGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTggg > 1:1646797/1‑93 (MQ=255)
gCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGt > 2:2928859/1‑93 (MQ=255)
ccAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGtt > 2:2802153/1‑93 (MQ=255)
ccAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGtt > 1:3003604/1‑93 (MQ=255)
cAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGttt > 2:4526820/1‑93 (MQ=255)
cAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGtta > 2:3298500/1‑92 (MQ=255)
gTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTaa > 2:1607972/1‑93 (MQ=255)
gTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTaa > 2:3134174/1‑93 (MQ=255)
tGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTaaa > 2:4086838/1‑93 (MQ=255)
tGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTaaa > 2:3270456/1‑93 (MQ=255)
gAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTaaaa > 1:3934426/1‑93 (MQ=255)
aaaaTATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAg > 2:4675578/1‑93 (MQ=255)
aaaaTATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAg > 1:1088123/1‑93 (MQ=255)
aaaaTATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAg > 1:609483/1‑93 (MQ=255)
aaaaTATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAg > 2:1359692/1‑93 (MQ=255)
aaTATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAACGTc > 1:1650670/1‑93 (MQ=255)
aaTATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTc > 2:3810709/1‑93 (MQ=255)
atatCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCt > 2:3297415/1‑93 (MQ=255)
atatCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCt > 1:1656349/1‑93 (MQ=255)
tCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTg < 1:4116172/93‑1 (MQ=255)
tCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTg > 2:2055764/1‑93 (MQ=255)
aGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGAc > 1:3242832/1‑93 (MQ=255)
aGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGAc > 1:3395843/1‑93 (MQ=255)
gCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGAcc > 2:3064393/1‑93 (MQ=255)
gCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGAcc > 1:1915887/1‑93 (MQ=255)
gCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGAcc > 2:3901619/1‑93 (MQ=255)
ccATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCg > 1:2891000/1‑93 (MQ=255)
ccATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCg > 2:546748/1‑93 (MQ=255)
aTGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCgcc > 1:2329453/1‑91 (MQ=255)
tGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAac > 1:2091350/1‑93 (MQ=255)
gCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAacc > 2:130872/1‑93 (MQ=255)
gCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAacc < 2:3888189/93‑1 (MQ=255)
aCTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCgg > 2:3029092/1‑93 (MQ=255)
aCTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCgg > 2:3140736/1‑93 (MQ=255)
aCTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCgg > 2:3821111/1‑93 (MQ=255)
tACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCAGc > 2:2498543/1‑93 (MQ=255)
|
GATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACTTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCAGC > NC_000913/3749621‑3749799
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACTTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCAGCTGAT > NC_000913/3749620‑3749803
|
CGATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGG > SRR4302535.4535947/1‑94 (MQ=60)
CGATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGG > SRR4302535.2067869/1‑94 (MQ=60)
ATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCA > SRR4302535.293871/1‑94 (MQ=60)
GACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATC > SRR4302535.4226334/1‑94 (MQ=60)
CAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCA > SRR4302535.1725013/1‑94 (MQ=60)
ACTTAAGAACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCAGCGACTGTACCTAGAATCGCACAGGCCAAC > SRR4302535.738857/1‑94 (MQ=60)
AGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAG > SRR4302535.212732/1‑94 (MQ=60)
GTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGC > SRR4302535.3429380/1‑94 (MQ=60)
ACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAA > SRR4302535.3293116/1‑94 (MQ=60)
ACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAA > SRR4302535.2022902/1‑94 (MQ=60)
GGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATA > SRR4302535.2608586/1‑94 (MQ=60)
GGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATA > SRR4302535.1570647/1‑94 (MQ=60)
GGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATAT > SRR4302535.2323614/1‑94 (MQ=60)
GGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATAT > SRR4302535.1594708/1‑94 (MQ=60)
GAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATC > SRR4302535.121031/1‑94 (MQ=60)
GAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATC > SRR4302535.4685077/1‑94 (MQ=60)
AGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCT > SRR4302535.1449706/1‑94 (MQ=60)
TTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAACAAATATCTTG > SRR4302535.13256/1‑94 (MQ=60)
TAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGC > SRR4302535.3544826/1‑94 (MQ=60)
AAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGA > SRR4302535.94532/1‑94 (MQ=60)
ATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATT > SRR4302535.2951251/1‑94 (MQ=60)
ATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATT > SRR4302535.4006185/1‑94 (MQ=60)
ATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTG > SRR4302535.45249/1‑94 (MQ=60)
ATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTG > SRR4302535.2082317/1‑94 (MQ=60)
CGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATC > SRR4302535.1673844/1‑94 (MQ=60)
GTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAA > SRR4302535.3105119/1‑94 (MQ=60)
TAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAA > SRR4302535.2564824/1‑94 (MQ=60)
TAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAA > SRR4302535.3163552/1‑94 (MQ=60)
GCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGG > SRR4302535.4457239/1‑94 (MQ=60)
CTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGG > SRR4302535.1658701/1‑94 (MQ=60)
CTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGG > SRR4302535.3522692/1‑94 (MQ=60)
GCCAGTGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTT > SRR4302535.3024658/1‑94 (MQ=60)
TGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAA > SRR4302535.3961273/1‑94 (MQ=60)
TGAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAA > SRR4302535.3747060/1‑94 (MQ=60)
GAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAG > SRR4302535.1095865/1‑94 (MQ=60)
GAAAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAG > SRR4302535.613733/1‑94 (MQ=60)
AAATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAACGTC > SRR4302535.1662606/1‑94 (MQ=60)
AATATCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCT > SRR4302535.1668330/1‑94 (MQ=60)
TCAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGA < SRR4302535.4144346/94‑1 (MQ=60)
CAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGAC > SRR4302535.3419467/1‑94 (MQ=60)
CAGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGAC > SRR4302535.3265357/1‑94 (MQ=60)
AGCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACC > SRR4302535.1929694/1‑94 (MQ=60)
GCCATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCG > SRR4302535.2911453/1‑94 (MQ=60)
CATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGcc > SRR4302535.2346115/1‑92 (MQ=60)
ATGCCGCGACTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAAC > SRR4302535.2106420/1‑94 (MQ=60)
CTGTACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCA > SRR4302535.1650639/1‑94 (MQ=60)
TACCTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCAGCT > SRR4302535.3958721/1‑94 (MQ=60)
CTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCAGCTGAT > SRR4302535.3014363/1‑94 (MQ=60)
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CGATGACAAAATTACAACTTAAGTACCGGGAGTTAAAAATTATCTCGGTAATCGCTGCCAGTGAAAATATCAGCCATGCCGCGACTGTACTTGGCATCGCACAGGCCAACGTCAGCAAATATCTTGCTGATTTTGAATCAAAAGTGGGTTTAAAAGTCTTTGACCGAACCACCCGGCAGCTGAT > NC_000913/3749620‑3749803
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
