Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,776,340	G→A	G439S (GGT→AGT)	lldP →	L‑lactate permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,776,340	0	G	A	100.0%	961.5 / NA	262	G439S (GGT→AGT)	lldP	L‑lactate permease
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (147/115); total (147/115)

Only 100 of 273 total aligned reads displayed.

CCATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCGGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCC  >  NC_000913/3776248‑3776429

ccATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCg                                                                                           >  2:1802345/1‑93 (MQ=255)

   tCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTc                                                                                        >  2:3469274/1‑93 (MQ=255)

   tCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTc                                                                                        <  2:2464948/93‑1 (MQ=255)

   tCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTc                                                                                        >  1:4436602/1‑93 (MQ=255)

   tCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTc                                                                                        <  1:3215851/93‑1 (MQ=255)

    cTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCa                                                                                       >  1:1956494/1‑93 (MQ=255)

     tACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCAt                                                                                      >  2:2446962/1‑93 (MQ=255)

     tACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCAt                                                                                      >  1:999405/1‑93 (MQ=255)

     caCTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCAt                                                                                      <  1:2833169/92‑1 (MQ=255)

      tcTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATg                                                                                     <  1:511743/92‑1 (MQ=255)

       cTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGc                                                                                    <  1:108891/93‑1 (MQ=255)

       cTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGc                                                                                    >  2:3772351/1‑93 (MQ=255)

        tCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACGCCAGTCATGCa                                                                                   <  2:1382067/93‑1 (MQ=255)

        tCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCa                                                                                   <  1:3649735/93‑1 (MQ=255)

        tCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCa                                                                                   >  1:2975551/1‑93 (MQ=255)

           aTCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTc                                                                                >  1:1318247/1‑93 (MQ=255)

           aTCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTc                                                                                >  2:1454996/1‑93 (MQ=255)

            tCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCa                                                                               <  1:4194871/93‑1 (MQ=255)

             cGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCAc                                                                              <  2:4446112/93‑1 (MQ=255)

               gTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACct                                                                            <  2:3645885/93‑1 (MQ=255)

               gTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACct                                                                            >  1:2093430/1‑93 (MQ=255)

                tATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACctt                                                                           >  1:1005074/1‑93 (MQ=255)

                 aTGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCATcttc                                                                          >  2:591178/1‑93 (MQ=255)

                 aTGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttc                                                                          <  2:1783572/93‑1 (MQ=255)

                 aTGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttc                                                                          <  2:3853287/93‑1 (MQ=255)

                 aTGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttc                                                                          <  1:3468097/93‑1 (MQ=255)

                   ggTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttctt                                                                        <  2:1097501/93‑1 (MQ=255)

                    gTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCttcttc                                                                       <  2:1852907/93‑1 (MQ=255)

                    gTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCttcttc                                                                       >  2:774813/1‑93 (MQ=255)

                        tGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGc                                                                   >  2:4660063/1‑93 (MQ=255)

                        tGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGc                                                                   >  2:61442/1‑93 (MQ=255)

                        tGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGc                                                                   <  1:951875/93‑1 (MQ=255)

                        tGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGc                                                                   >  2:921494/1‑93 (MQ=255)

                         ggCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGcc                                                                  <  2:44089/93‑1 (MQ=255)

                           cATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGt                                                                <  2:931214/93‑1 (MQ=255)

                           cATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGt                                                                >  1:682295/1‑93 (MQ=255)

                           cATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGt                                                                >  1:808407/1‑93 (MQ=255)

                            aTTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCCCCTTCTTCGCGACGtt                                                               >  1:2654635/1‑93 (MQ=255)

                             ttCGCCTTTATTTCGAACTATTCCGGGCTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCACCGTTc                                                              >  1:4665869/1‑93 (MQ=255)

                               cGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCt                                                            <  1:3755604/93‑1 (MQ=255)

                               cGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCt                                                            <  2:2344637/93‑1 (MQ=255)

                                gCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTc                                                           <  1:2911429/93‑1 (MQ=255)

                                gCCTTTATTTCGAACTATTCCGGACTGGCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCTCCGttcttc                                                           >  1:1596201/1‑93 (MQ=255)

                                 cgtttATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCg                                                          <  2:4164303/91‑1 (MQ=255)

                                 ccTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCg                                                          <  2:4119873/93‑1 (MQ=255)

                                 ccTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGAACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCg                                                          >  2:760692/1‑93 (MQ=255)

                                  cTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCGTTCACCTTCTTCTCGGCGATCCTCgc                                                         >  2:1789423/1‑92 (MQ=255)

                                  cTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCgg                                                         >  2:3262577/1‑93 (MQ=255)

                                   tttATTTCGACCTATTCCGGACTGTCATCAACGCTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTCCTCGCCGTTCCTCggc                                                        <  2:2281695/93‑1 (MQ=255)

                                   tttATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGGCGTTTCTCgag                                                        >  2:3816934/1‑91 (MQ=255)

                                   tttATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggc                                                        >  2:2783659/1‑93 (MQ=255)

                                   tttATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggc                                                        <  1:4020076/93‑1 (MQ=255)

                                   tttATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGCTCCTCggc                                                        >  2:2605592/1‑93 (MQ=255)

                                     tATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggctg                                                      >  2:2556060/1‑93 (MQ=255)

                                      aTTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggctgg                                                     >  2:1564892/1‑93 (MQ=255)

                                       tttCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggctggc                                                    <  2:732804/93‑1 (MQ=255)

                                       tttCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggctggc                                                    <  1:4161328/93‑1 (MQ=255)

                                          cGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGctggctgg                                                 <  1:126050/93‑1 (MQ=255)

                                           gAACTATTCCGGACTGTCATCAACACTGTCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTggg                                                <  1:636584/93‑1 (MQ=255)

                                           gAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTggg                                                >  2:2215358/1‑93 (MQ=255)

                                           gAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTggg                                                <  1:9030/93‑1 (MQ=255)

                                            aaCTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGGTgggg                                               >  2:1746920/1‑93 (MQ=255)

                                             aCTATTCCGGACGGTCATAAACACTGGCGCTGGCACTGGCGCACACCAGTGATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTggggg                                              <  2:4065749/93‑1 (MQ=255)

                                              cTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGt                                             >  1:3092677/1‑93 (MQ=255)

                                               tATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTgggggga                                            >  2:3061499/1‑91 (MQ=255)

                                               tATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTa                                            >  1:4258232/1‑93 (MQ=255)

                                                 ttCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGTGGGAtt                                          >  2:2058622/1‑93 (MQ=255)

                                                     ggACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTg                                      >  1:2037095/1‑93 (MQ=255)

                                                      gACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGa                                     <  2:1161743/93‑1 (MQ=255)

                                                       aCTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGAc                                    >  1:1199794/1‑93 (MQ=255)

                                                          gTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCgg                                 >  2:2876962/1‑93 (MQ=255)

                                                          gTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCgg                                 >  2:1639329/1‑93 (MQ=255)

                                                          gTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCgg                                 <  1:153329/93‑1 (MQ=255)

                                                            catcaACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGt                               <  2:1269451/93‑1 (MQ=255)

                                                             atcaACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTc                              >  2:4027580/1‑93 (MQ=255)

                                                             atcaACACTGGCGCTGGCACTGGCCCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTc                              >  2:4518840/1‑93 (MQ=255)

                                                              tcaACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCg                             >  1:2253502/1‑93 (MQ=255)

                                                               caACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCgg                            >  1:3411124/1‑93 (MQ=255)

                                                                aaCACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTCTTCCTGACCGGGTCGGa                           >  2:3458738/1‑93 (MQ=255)

                                                                aaCACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGa                           <  1:2790469/93‑1 (MQ=255)

                                                                 acacTGGCGCTGGCACTGGGGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGCATTCCTGACCGCGTCGGAt                          >  2:662142/1‑93 (MQ=38)

                                                                  cacTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGAtc                         >  1:2393048/1‑92 (MQ=255)

                                                                  cacTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGAtc                         >  2:2401877/1‑92 (MQ=255)

                                                                   acTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATAc                        >  1:1880533/1‑93 (MQ=255)

                                                                   acTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATAc                        >  1:1673105/1‑93 (MQ=255)

                                                                       gcgcTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCa                    <  2:1955170/93‑1 (MQ=255)

                                                                       gcgcTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCa                    >  1:2360307/1‑93 (MQ=255)

                                                                        cgcTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCAt                   <  2:4140344/93‑1 (MQ=255)

                                                                          cTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCt                 >  2:2118436/1‑93 (MQ=255)

                                                                           tGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTa                <  2:1903469/93‑1 (MQ=255)

                                                                           tGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTa                <  1:3278942/93‑1 (MQ=255)

                                                                            ggCACTGGCGCACACCAGTCATGCATTCTCCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTaa               <  2:2508951/93‑1 (MQ=255)

                                                                             gCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGGATTCCTGACCGGGTCGGATACCTCATCTAAc              >  1:3913740/1‑93 (MQ=255)

                                                                             gCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGATGGCTGGGGGTATTCCTGACCGGGTCGGATGCCTCATCTAAc              <  1:2522078/93‑1 (MQ=255)

                                                                                  ggCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCt         >  1:4074117/1‑93 (MQ=255)

                                                                                  ggCGCACACCAGTCATGCATTCACCTTCCTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCt         <  1:1479713/93‑1 (MQ=255)

                                                                                       acacCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTcg    >  1:4550353/1‑93 (MQ=255)

                                                                                       acacCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTcg    >  1:2183686/1‑93 (MQ=255)

                                                                                        cacCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTcgc   <  1:3541250/93‑1 (MQ=255)

                                                                                        cacCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGGCGGATACCTCATCTAACGCCCTGTTcgc   >  2:3091830/1‑93 (MQ=255)

CCATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCGGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCC  >  NC_000913/3776248‑3776429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCCATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCGGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCCGCG  >  NC_000913/3776247‑3776432

CCCATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCA                                                                                              >  SRR4302535.2373627/1‑94 (MQ=60)

CCCATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCA                                                                                              >  SRR4302535.2469387/1‑94 (MQ=60)

CCCATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCA                                                                                              <  SRR4302535.3194420/94‑1 (MQ=60)

CCCATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCA                                                                                              >  SRR4302535.3979056/1‑94 (MQ=60)

 CCATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAG                                                                                             >  SRR4302535.2068584/1‑94 (MQ=60)

  CATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGT                                                                                            >  SRR4302535.2002080/1‑94 (MQ=60)

  CATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGT                                                                                            <  SRR4302535.1312419/94‑1 (MQ=60)

  CATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGT                                                                                            >  SRR4302535.4606261/1‑94 (MQ=60)

   ATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTC                                                                                           >  SRR4302535.4467007/1‑94 (MQ=60)

    TCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCA                                                                                          >  SRR4302535.1970574/1‑94 (MQ=60)

    TCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCA                                                                                          <  SRR4302535.3238123/94‑1 (MQ=60)

     CTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCAT                                                                                         >  SRR4302535.1006492/1‑94 (MQ=60)

     CTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCAT                                                                                         >  SRR4302535.976870/1‑94 (MQ=60)

      CACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATG                                                                                        <  SRR4302535.2853280/94‑1 (MQ=60)

       TCTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGC                                                                                       <  SRR4302535.515318/94‑1 (MQ=60)

       ACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGC                                                                                       <  SRR4302535.2747955/94‑1 (MQ=60)

       ACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGC                                                                                       >  SRR4302535.2861517/1‑94 (MQ=60)

        CTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCA                                                                                      <  SRR4302535.109659/94‑1 (MQ=60)

        CTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCA                                                                                      >  SRR4302535.2996431/1‑94 (MQ=60)

         TCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCAT                                                                                     <  SRR4302535.1022277/94‑1 (MQ=60)

         TCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCAT                                                                                     <  SRR4302535.3675005/94‑1 (MQ=60)

           CATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTC                                                                                   >  SRR4302535.1327665/1‑94 (MQ=60)

           CATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTC                                                                                   >  SRR4302535.2423233/1‑94 (MQ=60)

           CATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTC                                                                                   <  SRR4302535.3513492/94‑1 (MQ=60)

            ATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCA                                                                                  <  SRR4302535.1226998/94‑1 (MQ=60)

            ATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCA                                                                                  >  SRR4302535.891777/1‑94 (MQ=60)

             TCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCAC                                                                                 <  SRR4302535.4223578/94‑1 (MQ=60)

              CGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACC                                                                                >  SRR4302535.3392893/1‑94 (MQ=60)

              CGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACC                                                                                <  SRR4302535.565468/94‑1 (MQ=60)

               GGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCT                                                                               >  SRR4302535.73800/1‑94 (MQ=60)

               GGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCT                                                                               <  SRR4302535.2952797/94‑1 (MQ=60)

               GGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCT                                                                               <  SRR4302535.3435784/94‑1 (MQ=60)

               GGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCT                                                                               <  SRR4302535.4216304/94‑1 (MQ=60)

               GGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCT                                                                               >  SRR4302535.2108518/1‑94 (MQ=60)

                GTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTT                                                                              >  SRR4302535.1012217/1‑94 (MQ=60)

                GTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTT                                                                              >  SRR4302535.1968582/1‑94 (MQ=60)

                 TATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTC                                                                             >  SRR4302535.123234/1‑94 (MQ=60)

                  ATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCT                                                                            <  SRR4302535.3492198/94‑1 (MQ=60)

                     GTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCT                                                                         <  SRR4302535.4008724/94‑1 (MQ=60)

                      TGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTC                                                                        >  SRR4302535.1132574/1‑94 (MQ=60)

                       GCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCG                                                                       <  SRR4302535.3825828/94‑1 (MQ=60)

                         TGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCC                                                                     <  SRR4302535.958623/94‑1 (MQ=60)

                           GCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGT                                                                   >  SRR4302535.814067/1‑94 (MQ=60)

                           GCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGT                                                                   >  SRR4302535.687072/1‑94 (MQ=60)

                            CATTCGCCTTTATTTCGACCTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCCCACCAGTCATGCATTCACCTTCTTCTCGCCGTT                                                                  <  SRR4302535.959886/94‑1 (MQ=60)

                            CATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACTCTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTT                                                                  <  SRR4302535.3959866/94‑1 (MQ=60)

                            CATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCCCCTTCTTCGCGACGTT                                                                  >  SRR4302535.2673656/1‑94 (MQ=60)

                            CATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTT                                                                  >  SRR4302535.2595121/1‑94 (MQ=60)

                             ATTCGCCTTTATTTCGAACTATTCCGGGCTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCACCGTTC                                                                 >  SRR4302535.4697409/1‑94 (MQ=60)

                             ATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTC                                                                 >  SRR4302535.1581711/1‑94 (MQ=60)

                             ATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTC                                                                 >  SRR4302535.2915954/1‑94 (MQ=60)

                             ATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTC                                                                 >  SRR4302535.3527869/1‑94 (MQ=60)

                                CGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTC                                                              <  SRR4302535.3781581/94‑1 (MQ=60)

                                CGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTC                                                              <  SRR4302535.2852089/94‑1 (MQ=60)

                                CGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTC                                                              <  SRR4302535.4368348/94‑1 (MQ=60)

                                CGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTC                                                              >  SRR4302535.4489553/1‑94 (MQ=60)

                                CGCCTTTATTTCGAACTATTCCGGACTGGCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCTCCGTTCTTC                                                              >  SRR4302535.1607715/1‑94 (MQ=60)

                                 GCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCG                                                             >  SRR4302535.2815320/1‑94 (MQ=60)

                                 GCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCG                                                             <  SRR4302535.2931995/94‑1 (MQ=60)

                                 GCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCG                                                             <  SRR4302535.345886/94‑1 (MQ=60)

                                  CCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCGTGCATTCACCTTCTTCTCGCCGTTCCTCGG                                                            >  SRR4302535.2184073/1‑94 (MQ=60)

                                  CCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGG                                                            <  SRR4302535.326528/94‑1 (MQ=60)

                                   CTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGC                                                           >  SRR4302535.418404/1‑94 (MQ=60)

                                   CTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGC                                                           >  SRR4302535.3254514/1‑94 (MQ=60)

                                    TTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCT                                                          <  SRR4302535.2650376/94‑1 (MQ=60)

                                    TTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCT                                                          <  SRR4302535.4047583/94‑1 (MQ=60)

                                      TATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGG                                                        >  SRR4302535.2027585/1‑94 (MQ=60)

                                       ATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGC                                                       >  SRR4302535.1923976/1‑94 (MQ=60)

                                       ATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCCCCGTTCCTCGGCTGGC                                                       >  SRR4302535.670425/1‑94 (MQ=60)

                                        TTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCT                                                      <  SRR4302535.4189812/94‑1 (MQ=60)

                                         TTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTG                                                     <  SRR4302535.3597643/94‑1 (MQ=60)

                                           CGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGG                                                   <  SRR4302535.126938/94‑1 (MQ=60)

                                            GAACTATTCCGGACTGTCATCAACACTGTCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGG                                                  <  SRR4302535.641024/94‑1 (MQ=60)

                                            GAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGG                                                  <  SRR4302535.9103/94‑1 (MQ=60)

                                             AACTATTCCTGACTGTCATCAACACGGGCACTGGCAGTGGCGCACCCCAGTCATGCATTCCCCTTCTGCTCGCCGTTCCTCGGCTGGCTGGGGG                                                 <  SRR4302535.2227212/94‑1 (MQ=60)

                                              ACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGT                                                >  SRR4302535.3114212/1‑94 (MQ=60)

                                               CTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGgt                                               >  SRR4302535.2427436/1‑92 (MQ=60)

                                               CTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGgt                                               >  SRR4302535.3574590/1‑92 (MQ=60)

                                               CTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTA                                               >  SRR4302535.4287402/1‑94 (MQ=60)

                                               CTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGGA                                               >  SRR4302535.1467476/1‑94 (MQ=60)

                                                TATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTAT                                              >  SRR4302535.1824473/1‑94 (MQ=60)

                                                 ATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATT                                             <  SRR4302535.137956/94‑1 (MQ=60)

                                                    ggtcagcacacaacccggggggcgggcacCTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCT                                          <  SRR4302535.4063371/65‑1 (MQ=60)

                                                    CCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCT                                          <  SRR4302535.1597626/94‑1 (MQ=60)

                                                     CGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTG                                         >  SRR4302535.2051764/1‑94 (MQ=60)

                                                       GACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGAC                                       >  SRR4302535.1208392/1‑94 (MQ=60)

                                                       GACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGAC                                       >  SRR4302535.4198227/1‑94 (MQ=60)

                                                        ACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACC                                      >  SRR4302535.4245265/1‑94 (MQ=60)

                                                         CTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCG                                     >  SRR4302535.685654/1‑94 (MQ=60)

                                                          TGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGG                                    >  SRR4302535.175063/1‑94 (MQ=60)

                                                          TGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGG                                    >  SRR4302535.3748507/1‑94 (MQ=60)

                                                          TGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGG                                    >  SRR4302535.407386/1‑94 (MQ=60)

                                                          TGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGG                                    >  SRR4302535.2389915/1‑94 (MQ=60)

                                                           GTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGG                                   <  SRR4302535.154406/94‑1 (MQ=60)

                                                           GTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGGATTCCTGACCGGG                                   >  SRR4302535.4279477/1‑94 (MQ=60)

                                                              ATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCG                                <  SRR4302535.2292972/94‑1 (MQ=60)

                                                              ATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCG                                >  SRR4302535.2269551/1‑94 (MQ=60)

                                                               TCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGG                               <  SRR4302535.1286319/94‑1 (MQ=60)

                                                               TCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGG                               >  SRR4302535.3434855/1‑94 (MQ=60)

                                                                CAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTNNGGNTATTCCTNACNGNGNCNGA                              >  SRR4302535.3804888/1‑94 (MQ=60)

                                                                CAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGA                              >  SRR4302535.1519804/1‑94 (MQ=60)

                                                                 AACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGAT                             <  SRR4302535.2810329/94‑1 (MQ=60)

                                                                 AACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGAT                             <  SRR4302535.4704868/94‑1 (MQ=60)

                                                                  ACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGTGTATTCCTGACCGGGTCGGATC                            >  SRR4302535.2392086/1‑94 (MQ=60)

                                                                  ACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATC                            >  SRR4302535.2410248/1‑94 (MQ=60)

                                                                  ACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATA                            >  SRR4302535.4410042/1‑94 (MQ=60)

                                                                   CACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATAC                           >  SRR4302535.508477/1‑94 (MQ=60)

                                                                   CACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATAC                           >  SRR4302535.3201876/1‑94 (MQ=60)

                                                                   CACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATAC                           >  SRR4302535.1894086/1‑94 (MQ=60)

                                                                   CACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATAC                           >  SRR4302535.1685213/1‑94 (MQ=60)

                                                                     CTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCT                         <  SRR4302535.2219030/94‑1 (MQ=60)

                                                                       GGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCA                       <  SRR4302535.2096127/94‑1 (MQ=60)

                                                                       GGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCA                       >  SRR4302535.2377247/1‑94 (MQ=60)

                                                                       GGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCA                       >  SRR4302535.1533999/1‑94 (MQ=60)

                                                                        GCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCAT                      <  SRR4302535.29752/94‑1 (MQ=60)

                                                                          GCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCT                    >  SRR4302535.4603624/1‑94 (MQ=60)

                                                                           CTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTA                   <  SRR4302535.2139440/94‑1 (MQ=60)

                                                                            TGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAA                  <  SRR4302535.3301715/94‑1 (MQ=60)

                                                                             GGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAAC                 <  SRR4302535.954491/94‑1 (MQ=60)

                                                                             GGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGGATTCCTGACCGGGTCGGATACCTCATCTAAC                 >  SRR4302535.3940528/1‑94 (MQ=60)

                                                                              GCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACG                >  SRR4302535.766553/1‑94 (MQ=60)

                                                                              GCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGATGGCTGGGGGTATTCCTGACCGGGTCGGATGCCTCATCTAACG                <  SRR4302535.2540253/94‑1 (MQ=60)

                                                                               CACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTCACGC               >  SRR4302535.1611051/1‑94 (MQ=60)

                                                                                ACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCC              >  SRR4302535.2251647/1‑94 (MQ=60)

                                                                                  TGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCT            >  SRR4302535.4101992/1‑94 (MQ=60)

                                                                                   GGCGCACACCAGTCATGCATTCACCTTCCTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTG           <  SRR4302535.1490298/94‑1 (MQ=60)

                                                                                    GCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGT          <  SRR4302535.3203627/94‑1 (MQ=60)

                                                                                     CGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTT         >  SRR4302535.3927827/1‑94 (MQ=60)

                                                                                      GCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTC        <  SRR4302535.1190215/94‑1 (MQ=60)

                                                                                      GCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTC        <  SRR4302535.847146/94‑1 (MQ=60)

                                                                                       CACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCG       >  SRR4302535.2199259/1‑94 (MQ=60)

                                                                                       CACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCG       >  SRR4302535.4581456/1‑94 (MQ=60)

                                                                                         CACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCC     >  SRR4302535.4073226/1‑94 (MQ=60)

                                                                                         CACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCC     <  SRR4302535.3565856/94‑1 (MQ=60)

                                                                                         CACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCC     <  SRR4302535.3072993/94‑1 (MQ=60)

                                                                                          ACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCCG    >  SRR4302535.557120/1‑94 (MQ=60)

                                                                                           CCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCCGC   <  SRR4302535.502716/94‑1 (MQ=60)

                                                                                           CCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCCGC   >  SRR4302535.1241320/1‑94 (MQ=60)

                                                                                           CCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCCGC   <  SRR4302535.1581527/94‑1 (MQ=60)

                                                                                            CAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCCGCG  <  SRR4302535.598651/94‑1 (MQ=60)

CCCATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCGGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCCGCG  >  NC_000913/3776247‑3776432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`