Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,778,658 (C)5→4 intergenic (+14/‑184) lldD → / → yibK L‑lactate dehydrogenase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,778,6540C.93.2% 744.9 / 38.6 192intergenic (+10/‑188)lldD/yibKL‑lactate dehydrogenase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (13/0);  new base . (6/173);  total (19/173)
Fisher's exact test for biased strand distribution p-value = 5.31e-16
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 237 total aligned reads displayed.

TTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTT  >  NC_000913/3778562‑3778742
                                                                                             |                                                                                        
ttACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTgcgc                                                                                          >  2:7215857/1‑93 (MQ=255)
   cGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccc                                                                                       <  2:672783/93‑1 (MQ=255)
    gCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccct                                                                                      <  2:1842817/93‑2 (MQ=255)
    gCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGccccc                                                                                      >  1:730010/1‑93 (MQ=255)
      aaGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGgcccccc                                                                                    >  1:1818699/1‑91 (MQ=255)
      aaGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGccccccc                                                                                    >  1:4958000/1‑91 (MQ=255)
      aaGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGccccccc                                                                                    >  1:4112927/1‑91 (MQ=255)
       aGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccctcac                                                                                   <  1:7486047/93‑5 (MQ=255)
          ttCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCcccccccccc                                                                                >  2:4498120/1‑93 (MQ=255)
           tCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCccccccccccc                                                                               >  2:3433317/1‑92 (MQ=255)
           tCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCcccccccccca                                                                               >  1:5562870/1‑92 (MQ=255)
            cGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTaa                                                                             <  1:2137189/93‑1 (MQ=255)
            cGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTaa                                                                             <  1:979956/93‑1 (MQ=255)
             gCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCccccccccccccc                                                                             >  1:5176114/1‑90 (MQ=255)
             gCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAAc                                                                            <  1:4832531/93‑1 (MQ=255)
               tGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAAccc                                                                          <  2:7098282/93‑1 (MQ=255)
               tGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAAccc                                                                          <  1:5504890/93‑1 (MQ=255)
                 gTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCctc                                                                        <  2:1422490/93‑1 (MQ=255)
                 gTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCctc                                                                        <  2:883921/93‑1 (MQ=255)
                 gTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCctc                                                                        <  1:1223587/93‑1 (MQ=255)
                    cAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTcc                                                                     <  2:6287265/93‑1 (MQ=255)
                     aGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTccc                                                                    <  1:158088/93‑1 (MQ=255)
                     aGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTccc                                                                    <  2:7858902/93‑1 (MQ=255)
                      ggggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCCAcccccccccc                                                                    >  2:4103953/1‑93 (MQ=255)
                      ggggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCACCCCCCTcccc                                                                   >  2:6609301/1‑92 (MQ=255)
                      ggggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCCCCCCCACCCTCccccc                                                                   >  2:7793041/1‑92 (MQ=255)
                        ggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCAACCCCCTcccccc                                                                 >  1:2749989/1‑90 (MQ=255)
                        ggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCa                                                                 <  1:4522170/93‑1 (MQ=255)
                         gCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAg                                                                <  1:80849/93‑1 (MQ=255)
                            gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCTCCCTAACCCTCTCCCTCAGGga                                                             <  2:2888718/93‑1 (MQ=255)
                            gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGga                                                             <  1:3211999/93‑1 (MQ=255)
                            gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGga                                                             <  1:2232761/93‑1 (MQ=255)
                             ggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCACCCCCCAcccctccccctcggtg                                                              >  1:6615854/1‑89 (MQ=255)
                             ggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGgag                                                            <  1:5704804/93‑1 (MQ=255)
                              gTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGgaga                                                           <  2:3202000/93‑1 (MQ=255)
                              gTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGgaga                                                           <  1:705069/93‑1 (MQ=255)
                               tAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGagag                                                          <  1:5249793/93‑1 (MQ=255)
                               tAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGagag                                                          <  2:5578831/93‑1 (MQ=255)
                                aaaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAgg                                                         <  1:6886602/93‑1 (MQ=255)
                                aaaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAgg                                                         <  2:2577869/93‑1 (MQ=255)
                                 aaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAATGGCAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAggg                                                        <  2:5062133/93‑1 (MQ=38)
                                 aaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCACCCCAAACCCCCCCCTCAGGGAGAggg                                                        >  2:2714199/1‑93 (MQ=255)
                                 aaGAGTTGCCTGCGGCACGGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAggg                                                        <  2:5672124/93‑1 (MQ=255)
                                  agagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCCAACCCCCCCCCCCCGgggggggg                                                        >  1:5385074/1‑93 (MQ=255)
                                   gagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGa                                                      <  1:5197335/93‑1 (MQ=255)
                                   gagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGa                                                      <  1:4222800/93‑1 (MQ=255)
                                    agTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAc                                                     <  1:7226569/93‑1 (MQ=255)
                                    agTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAc                                                     <  2:4330617/93‑1 (MQ=255)
                                    agTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAc                                                     <  2:7635461/93‑1 (MQ=255)
                                    agTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAc                                                     <  2:6401534/93‑1 (MQ=255)
                                    agTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAc                                                     <  1:2907342/93‑1 (MQ=255)
                                    agTTGCCTGCGGCACTGGCGCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAc                                                     <  2:6769460/93‑1 (MQ=255)
                                    agTTGCCTGCGCCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCTTCTCCCTCAGGGAGAGGGGAc                                                     <  1:3834477/93‑1 (MQ=255)
                                     gTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAcc                                                    <  2:2191366/93‑1 (MQ=255)
                                         ccTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTc                                                <  1:916603/93‑1 (MQ=255)
                                          cTGCGGCACTTGCTCCCATGGCTAAAGGCAATGCGGCATAGTCGTTTGCGCCCCTCCCCCTATCCCTCTCCCTCAGGGAGAGGGGACCGTTCg                                               <  2:798483/93‑1 (MQ=255)
                                          cTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCg                                               <  2:4556363/93‑1 (MQ=255)
                                              ggCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcgc                                           <  2:371096/93‑1 (MQ=255)
                                               gCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCt                                          <  1:3057601/93‑1 (MQ=255)
                                                  cTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgta                                       <  2:1548964/93‑1 (MQ=255)
                                                  cTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgta                                       <  1:2950661/93‑1 (MQ=255)
                                                   tGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCCCCCTACCCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtat                                      <  2:366775/93‑1 (MQ=255)
                                                   tGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtat                                      <  1:2537767/93‑1 (MQ=255)
                                                    ggCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatg                                     <  2:6783146/93‑1 (MQ=255)
                                                     gCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatgt                                    <  1:6584165/93‑1 (MQ=255)
                                                      cTCCCATGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTAc                                  <  1:5052725/93‑1 (MQ=38)
                                                       tCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTAc                                  <  1:7868884/93‑1 (MQ=255)
                                                        cccATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCCACCCACTCCCTCACGGGGAGGGGGGCGGTCGGCGCCGTATGTACt                                 >  1:954909/1‑93 (MQ=255)
                                                         ccATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTc                                <  1:1716052/93‑1 (MQ=255)
                                                           aTGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTccc                              <  2:2613/93‑1 (MQ=255)
                                                             ggCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTc                            <  1:2943293/93‑1 (MQ=255)
                                                             ggCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTc                            <  1:261911/93‑1 (MQ=255)
                                                              gCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCa                           <  1:7599622/93‑1 (MQ=255)
                                                                gAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAct                         <  2:1292199/93‑1 (MQ=255)
                                                                gAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCCAACCCTCTCCCTCCGGGGGAGGGGGGCGTTCCGCGCTGTATGTTCTCCCTCAct                         >  2:3964834/1‑93 (MQ=255)
                                                                 aaaGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCActc                        <  1:1529257/93‑1 (MQ=255)
                                                                  aaGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCActct                       <  1:2758951/93‑1 (MQ=255)
                                                                     ggAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCCACCCCCTCCCTCCCGGGGGGGGGGCCGCTCGGCGCCGTTTGTACTTCCTCCctctcta                    >  2:5509502/1‑90 (MQ=255)
                                                                      gAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa                   <  2:4148719/93‑1 (MQ=255)
                                                                      gAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa                   <  2:580957/93‑1 (MQ=255)
                                                                      gAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa                   <  1:1956330/93‑1 (MQ=255)
                                                                      gAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa                   <  2:3693474/93‑1 (MQ=255)
                                                                       aaTGCGGCATAGTCGTTTGCGCCCCCCACCCCAACCCTCTCCCCCCGGGGGAGGGGGACGGTCGGCGCTGTATGTACTCCCTCACTCTGAAAc                  >  1:1409953/1‑93 (MQ=255)
                                                                       aaTGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAc                  <  1:7383187/93‑1 (MQ=255)
                                                                       aaTGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAc                  <  2:1525454/93‑1 (MQ=255)
                                                                        aTGCGGCATAGTCGTTTGCGCCCCTCCCCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACg                 <  2:3264644/93‑1 (MQ=255)
                                                                        aTGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACg                 <  1:2723081/93‑1 (MQ=255)
                                                                          gCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGac               <  1:3932768/93‑1 (MQ=255)
                                                                             gCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACAcc            <  2:317598/93‑1 (MQ=255)
                                                                               aTAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGc          <  2:5242291/93‑1 (MQ=255)
                                                                                tAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAACACACCGcc         >  1:6800830/1‑92 (MQ=37)
                                                                                 aGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAc        <  1:3542544/93‑1 (MQ=255)
                                                                                  gTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAct       <  2:5975516/93‑1 (MQ=255)
                                                                                   tCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCActc      <  2:6976686/93‑1 (MQ=255)
                                                                                    cGTTTGCGCTCCGCTCCCTAACCCTCTCCCTCGGGGAGTGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCAGAAACGACACCGCActct     <  2:3673021/93‑1 (MQ=255)
                                                                                    cGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCActct     <  1:5762975/93‑1 (MQ=255)
                                                                                     gTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCtt    <  2:3794681/93‑1 (MQ=255)
                                                                                     gTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCtt    <  2:4706151/93‑1 (MQ=255)
                                                                                      tttGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCttt   <  2:5006821/93‑1 (MQ=255)
                                                                                       ttGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCtttt  <  2:5340220/93‑1 (MQ=255)
                                                                                             |                                                                                        
TTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTT  >  NC_000913/3778562‑3778742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT  >  NC_000913/3778565‑3778751
                                                                                             |                                                                                             
CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCC                                                                                               >  SRR4302543.736558/1‑94 (MQ=60)
CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCC                                                                                               >  SRR4302543.1250360/1‑94 (MQ=60)
 GCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCC                                                                                              >  SRR4302543.5283061/1‑94 (MQ=60)
  CAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGGCCCCCC                                                                                             >  SRR4302543.1835015/1‑94 (MQ=60)
  CAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCC                                                                                             >  SRR4302543.4149963/1‑94 (MQ=60)
  CAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCC                                                                                             >  SRR4302543.5003137/1‑94 (MQ=60)
  CAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCC                                                                                             >  SRR4302543.4097537/1‑94 (MQ=60)
   AAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCAC                                                                                           <  SRR4302543.4927562/94‑1 (MQ=60)
    AGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccc                                                                                           >  SRR4302543.1940348/1‑90 (MQ=60)
    AGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACC                                                                                          <  SRR4302543.7557685/94‑1 (MQ=60)
    AGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACC                                                                                          <  SRR4302543.5595841/94‑1 (MQ=60)
       TTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccca                                                                                        >  SRR4302543.5613465/1‑87 (MQ=60)
         CGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccccc                                                                                      >  SRR4302543.5222844/1‑85 (MQ=60)
         CGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAAC                                                                                     <  SRR4302543.988604/94‑1 (MQ=60)
         CGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAAC                                                                                     <  SRR4302543.2156315/94‑1 (MQ=60)
         CGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCAATGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCCCCCTAAC                                                                                     >  SRR4302543.5493075/1‑94 (MQ=60)
          GCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACC                                                                                    <  SRR4302543.4876614/94‑1 (MQ=60)
          GCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACC                                                                                    <  SRR4302543.964510/94‑1 (MQ=60)
           CTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccccccc                                                                                    >  SRR4302543.4858354/1‑83 (MQ=60)
            TGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCT                                                                                  <  SRR4302543.396572/94‑1 (MQ=60)
            TGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCT                                                                                  <  SRR4302543.5554864/94‑1 (MQ=60)
              GTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCT                                                                                <  SRR4302543.4570131/94‑1 (MQ=60)
              GTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCT                                                                                <  SRR4302543.1234592/94‑1 (MQ=60)
              GTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCT                                                                                <  SRR4302543.7120814/94‑1 (MQ=60)
                 CAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCCCCCCAACCCTCCCCC                                                                             >  SRR4302543.2593932/1‑94 (MQ=60)
                 CAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCC                                                                             <  SRR4302543.2043178/94‑1 (MQ=60)
                  AGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCT                                                                            <  SRR4302543.159443/94‑1 (MQ=60)
                   GGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTC                                                                           <  SRR4302543.7961333/94‑1 (MQ=60)
                    GGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccaaccccctcccccc                                                                           >  SRR4302543.2775002/1‑74 (MQ=60)
                    GGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTCCGCCCCTCACCCTAACCCTCTCCCTCA                                                                          <  SRR4302543.3394147/94‑1 (MQ=60)
                     GGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTTCGCCCCTCACCCTAACCCTCTCCCTCAG                                                                         <  SRR4302543.1847924/94‑1 (MQ=60)
                     GGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAG                                                                         <  SRR4302543.4563300/94‑1 (MQ=60)
                      GCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccaaccctccccccccgg                                                                         >  SRR4302543.1113176/1‑72 (MQ=60)
                      GCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGG                                                                        <  SRR4302543.81598/94‑1 (MQ=60)
                       GTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGG                                                                       <  SRR4302543.1543786/94‑1 (MQ=60)
                       GTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGG                                                                       <  SRR4302543.2764256/94‑1 (MQ=60)
                       CTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccccccctccccccccctc                                                                        >  SRR4302543.4864774/1‑71 (MQ=60)
                       CTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGG                                                                       <  SRR4302543.1613436/94‑1 (MQ=60)
                        TGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccccccccccccccccccccc                                                                       >  SRR4302543.3249093/1‑70 (MQ=60)
                         GGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcaccccccacccctccccctcggtg                                                                      >  SRR4302543.6678234/1‑69 (MQ=60)
                         GGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAG                                                                     <  SRR4302543.2252953/94‑1 (MQ=60)
                         GGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAG                                                                     <  SRR4302543.3241008/94‑1 (MQ=60)
                          GGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGA                                                                    <  SRR4302543.5756839/94‑1 (MQ=60)
                           GTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccacaacccctcccccgccagag                                                                    >  SRR4302543.1096700/1‑67 (MQ=60)
                           GTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAG                                                                   <  SRR4302543.4096513/94‑1 (MQ=60)
                           GTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAG                                                                   <  SRR4302543.711495/94‑1 (MQ=60)
                           GTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAG                                                                   <  SRR4302543.7376504/94‑1 (MQ=60)
                           GTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAG                                                                   <  SRR4302543.234602/94‑1 (MQ=60)
                            TAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccccaccaccccccccctccagctg                                                                   >  SRR4302543.3198389/1‑66 (MQ=60)
                            TAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGG                                                                  <  SRR4302543.2707192/94‑1 (MQ=60)
                            TAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGG                                                                  <  SRR4302543.5297119/94‑1 (MQ=60)
                            TAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGG                                                                  <  SRR4302543.7608353/94‑1 (MQ=60)
                             AAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccaaaccccccccccccggggaggg                                                                  >  SRR4302543.6914030/1‑65 (MQ=60)
                             AAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCACCCccaccccctcccccccggggagg                                                                  >  SRR4302543.1012563/1‑71 (MQ=60)
                             AAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGG                                                                 <  SRR4302543.6448589/94‑1 (MQ=60)
                             AAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGG                                                                 <  SRR4302543.6951374/94‑1 (MQ=60)
                              AAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccccaacctctcccccccggggagggg                                                                 >  SRR4302543.7883258/1‑64 (MQ=60)
                              AAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccccaaccccccccccccggggggggg                                                                 >  SRR4302543.5433963/1‑64 (MQ=60)
                               AGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccccccccccccccccccccgggggggg                                                                >  SRR4302543.580971/1‑63 (MQ=60)
                               AGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGA                                                               <  SRR4302543.1802690/94‑1 (MQ=60)
                                GAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAC                                                              <  SRR4302543.5244197/94‑1 (MQ=60)
                                GAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAC                                                              <  SRR4302543.4261092/94‑1 (MQ=60)
                                 AGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccgcccccccccccccccccccgggggggggc                                                              >  SRR4302543.6273017/1‑61 (MQ=60)
                                 AGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC                                                             <  SRR4302543.4762589/94‑1 (MQ=60)
                                 AGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC                                                             <  SRR4302543.317800/94‑1 (MQ=60)
                                 AGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC                                                             <  SRR4302543.2933776/94‑1 (MQ=60)
                                 AGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC                                                             <  SRR4302543.7296582/94‑1 (MQ=60)
                                 AGTTGCCTGCGCCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCTTCTCCCTCAGGGAGAGGGGACC                                                             <  SRR4302543.3868313/94‑1 (MQ=60)
                                    TGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTT                                                          <  SRR4302543.2780472/94‑1 (MQ=60)
                                     GCCTGCGGCACTGGCTCCCATGGCGAAAGGGCATGCGGCATAGTCGTTTGCGCACCCCACCCTAACCCTCTCCCTCAGGCAGATGCGACCGTTC                                                         >  SRR4302543.67676/1‑94 (MQ=60)
                                     GCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccccccccccccccccccccgcggggggggcgg                                                          >  SRR4302543.6567506/1‑57 (MQ=60)
                                     GCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcacccccacactctcccccacggggggggggacggtt                                                          >  SRR4302543.2677408/1‑57 (MQ=60)
                                      CCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCaccccccacacccaccctccctccgggggggcgcgccg                                                         >  SRR4302543.671067/1‑56 (MQ=60)
                                      CCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCACCCacaccccccccccccccccccgcggtgtcggc                                                         >  SRR4302543.7346557/1‑62 (MQ=60)
                                      CCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCG                                                        <  SRR4302543.924631/94‑1 (MQ=60)
                                      CCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCG                                                        <  SRR4302543.951148/94‑1 (MQ=60)
                                      CCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCG                                                        <  SRR4302543.7525415/94‑1 (MQ=60)
                                       CTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGG                                                       <  SRR4302543.7047838/94‑1 (MQ=60)
                                            GCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG                                                  <  SRR4302543.3085121/94‑1 (MQ=60)
                                               CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTAT                                               <  SRR4302543.237595/94‑1 (MQ=60)
                                               CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTAT                                               <  SRR4302543.4807302/94‑1 (MQ=60)
                                               CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTAT                                               <  SRR4302543.2977446/94‑1 (MQ=60)
                                               CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTAT                                               <  SRR4302543.2977448/94‑1 (MQ=60)
                                                TGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATG                                              <  SRR4302543.2560890/94‑1 (MQ=60)
                                                TGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATG                                              <  SRR4302543.4353066/94‑1 (MQ=60)
                                                TGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATG                                              <  SRR4302543.7820353/94‑1 (MQ=60)
                                                  GCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccccccccccccccccccccgcgcgggggggggccggggcggcgcgt                                             >  SRR4302543.1736621/1‑44 (MQ=60)
                                                  GCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTA                                            <  SRR4302543.6646178/94‑1 (MQ=60)
                                                   GTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTAC                                           <  SRR4302543.1548886/94‑1 (MQ=60)
                                                   CTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccccccccccccccccccccgcagggggggggggggggccggtggtg                                            >  SRR4302543.4738019/1‑43 (MQ=60)
                                                   CTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccccaccccccccccccccgcgaggggggcgtgcggcgcggtgtggtt                                            >  SRR4302543.7638202/1‑43 (MQ=60)
                                                   CTCCCATGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACT                                          <  SRR4302543.5098664/94‑1 (MQ=60)
                                                    TCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccccacccactccctcacggggaggggggcggtcggcgccgtatgtact                                           >  SRR4302543.963281/1‑42 (MQ=60)
                                                    TCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACT                                          <  SRR4302543.5098663/94‑1 (MQ=60)
                                                    TCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACT                                          <  SRR4302543.7942978/94‑1 (MQ=60)
                                                     CCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcgcccccccccccgccccccggcggggggggggggccggcggccagcgttttc                                          >  SRR4302543.6711333/1‑41 (MQ=60)
                                                     CCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccccacccccccccccccggggggggggggggttggcgccggtgtgtctc                                          >  SRR4302543.1107714/1‑41 (MQ=60)
                                                     CCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcacccccccccccccccccccccccgaggggggggtcggcgcggcggtgttgc                                          >  SRR4302543.3556818/1‑41 (MQ=60)
                                                      CCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccccccccctccccccccggggggggggacggcggggcgctgtgtgctcc                                         >  SRR4302543.899957/1‑40 (MQ=60)
                                                      CCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCC                                        <  SRR4302543.1731385/94‑1 (MQ=60)
                                                      CCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCC                                        <  SRR4302543.7495520/94‑1 (MQ=60)
                                                        ATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccctaccccacttccccccggagacggcaagcgccggcgctggatgccttccca                                       >  SRR4302543.1531303/1‑38 (MQ=60)
                                                        ATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccccccccccccccccccccccgcggcacgggggggcgcgccggggtggctc                                       >  SRR4302543.3285097/1‑38 (MQ=60)
                                                        ATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcaccccaaacctcccccccccgggggggggggccgtcggggctggtgtttatcccc                                       >  SRR4302543.959714/1‑38 (MQ=60)
                                                          GGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA                                    <  SRR4302543.2970016/94‑1 (MQ=60)
                                                          GGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA                                    <  SRR4302543.822905/94‑1 (MQ=60)
                                                          GGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA                                    <  SRR4302543.1502889/94‑1 (MQ=60)
                                                          GGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA                                    <  SRR4302543.264203/94‑1 (MQ=60)
                                                           GCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAC                                   <  SRR4302543.6670893/94‑1 (MQ=60)
                                                           GCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAC                                   <  SRR4302543.7671795/94‑1 (MQ=60)
                                                            CGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCccccccccccccctccccccccggggggggggccgttggggcggggtgtttttccccccc                                   >  SRR4302543.5196298/1‑34 (MQ=60)
                                                            CGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACT                                  <  SRR4302543.5573530/94‑1 (MQ=60)
                                                            CGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACT                                  <  SRR4302543.2829970/94‑1 (MQ=60)
                                                             GAAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTC                                 <  SRR4302543.4207140/94‑1 (MQ=60)
                                                              AAAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccccccccccccccctcccgcggagggggcggtgagcgcccctggtaaacccccccccc                                 >  SRR4302543.1039715/1‑32 (MQ=60)
                                                              AAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCCACCCTCTCCCCCCCAGAGAGGGGGCCGTTCGGCGCTGGGTGTACTCCCTCCCTCT                                >  SRR4302543.3602171/1‑94 (MQ=19)
                                                              AAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCT                                <  SRR4302543.1542973/94‑1 (MQ=60)
                                                              AAAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCT                                <  SRR4302543.7263035/94‑1 (MQ=60)
                                                               AAGGGAATGCGGCATAGTCGTTTGCGCCCCCcccccccccccccccccccccccggggggggggggggcgggggggggtgttttcccccccccc                                >  SRR4302543.6844532/1‑31 (MQ=60)
                                                               AAGGGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTG                               <  SRR4302543.2784051/94‑1 (MQ=60)
                                                                  GGAATGCGGCATAGTCGTTTGCGCCCCCTCcccctcccctcccccccttggtggaggggggggtcggccgctgtctttctccccctcccttcca                             >  SRR4302543.2506534/1‑30 (MQ=60)
                                                                  GGAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAA                            <  SRR4302543.7308622/94‑1 (MQ=60)
                                                                   GAATGCGGCATAGTCGTTTGCGCCCCCCACCCCAACCCTCTCCCCCCGGGGGAGGGGGACGGTCGGCGCTGTATGTACTCCCTCACTCTGAAAC                           >  SRR4302543.1422694/1‑94 (MQ=59)
                                                                   GAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC                           <  SRR4302543.2901169/94‑1 (MQ=60)
                                                                   GAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC                           <  SRR4302543.3075691/94‑1 (MQ=60)
                                                                   GAATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAC                           <  SRR4302543.1973880/94‑1 (MQ=60)
                                                                    AATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACG                          <  SRR4302543.7454142/94‑1 (MQ=60)
                                                                     ATGCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGA                         <  SRR4302543.2747846/94‑1 (MQ=60)
                                                                       GCGGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACA                       <  SRR4302543.3967507/94‑1 (MQ=60)
                                                                         GGCATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACC                     <  SRR4302543.957030/94‑1 (MQ=60)
                                                                            ATAGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAacacaccgcc                  >  SRR4302543.6865048/1‑84 (MQ=60)
                                                                              AGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACT                <  SRR4302543.518382/94‑1 (MQ=60)
                                                                              AGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACT                <  SRR4302543.6797099/94‑1 (MQ=60)
                                                                              AGTCGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACT                <  SRR4302543.3574020/94‑1 (MQ=60)
                                                                               agtcggttgcgaCCCTCACACTAACCCTCGCCCTCAGCGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACT                <  SRR4302543.518159/82‑1 (MQ=60)
                                                                                 CGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTT             <  SRR4302543.351534/94‑1 (MQ=60)
                                                                                 CGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTT             <  SRR4302543.5815471/94‑1 (MQ=60)
                                                                                 CGTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTT             <  SRR4302543.3742563/94‑1 (MQ=60)
                                                                                  GTTTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTT            <  SRR4302543.5225992/94‑1 (MQ=60)
                                                                                    TTGCGCCCCTCTCCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTT          <  SRR4302543.5658339/94‑1 (MQ=60)
                                                                                    TTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTT          <  SRR4302543.6507880/94‑1 (MQ=60)
                                                                                    TTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTT          <  SRR4302543.579091/94‑1 (MQ=60)
                                                                                    TTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTT          <  SRR4302543.216884/94‑1 (MQ=60)
                                                                                    TTGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTT          <  SRR4302543.2937134/94‑1 (MQ=60)
                                                                                     TGCGCCCCTCTCCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTT         <  SRR4302543.1695775/94‑1 (MQ=60)
                                                                                     TGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTT         <  SRR4302543.1695776/94‑1 (MQ=60)
                                                                                     TGCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTT         <  SRR4302543.2093060/94‑1 (MQ=60)
                                                                                      GCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTT        <  SRR4302543.2687886/94‑1 (MQ=60)
                                                                                      GCGCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTT        <  SRR4302543.7263820/94‑1 (MQ=60)
                                                                                        cgCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTCTTTC       <  SRR4302543.5094318/92‑1 (MQ=60)
                                                                                         GCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT      <  SRR4302543.381287/94‑1 (MQ=60)
                                                                                           CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC    <  SRR4302543.2547911/94‑1 (MQ=60)
                                                                                           CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC    <  SRR4302543.4583065/94‑1 (MQ=60)
                                                                                            CCTCCCCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCC   <  SRR4302543.3398031/94‑1 (MQ=60)
                                                                                            CCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCC   >  SRR4302543.4478821/1‑94 (MQ=60)
                                                                                            CCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCC   <  SRR4302543.4423998/94‑1 (MQ=60)
                                                                                             CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT  <  SRR4302543.4748770/94‑1 (MQ=60)
                                                                                             CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT  >  SRR4302543.4617720/1‑94 (MQ=60)
                                                                                             CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT  <  SRR4302543.847578/94‑1 (MQ=60)
                                                                                             CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT  >  SRR4302543.7481904/1‑94 (MQ=60)
                                                                                             CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT  <  SRR4302543.6546536/94‑1 (MQ=60)
                                                                                             CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT  <  SRR4302543.4408941/94‑1 (MQ=60)
                                                                                             CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT  <  SRR4302543.1661088/94‑1 (MQ=60)
                                                                                             CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT  <  SRR4302543.6538784/94‑1 (MQ=60)
                                                                                             |                                                                                             
CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT  >  NC_000913/3778565‑3778751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: