Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,778,658 |
(C)5→4 |
intergenic (+14/‑184) |
lldD → / → yibK |
L‑lactate dehydrogenase/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,778,654 | 0 | C | . | 96.4%
| 470.9
/ 6.0
| 112 | intergenic (+10/‑188) | lldD/yibK | L‑lactate dehydrogenase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (4/0); new base . (4/104); total (8/104) |
| Fisher's exact test for biased strand distribution p-value = 1.13e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 139 total aligned reads displayed.
TTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTT > NC_000913/3778562‑3778742
|
ttACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTgcgc > 2:3730922/1‑93 (MQ=255)
ttACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTgcgc > 2:2776766/1‑93 (MQ=255)
ttACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTgcgc > 2:2221768/1‑93 (MQ=255)
ttACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTgcgc < 1:4071158/93‑1 (MQ=255)
cGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccc < 1:1387835/93‑1 (MQ=255)
cGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccc < 2:2923336/93‑1 (MQ=255)
cAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccctc < 1:757875/93‑3 (MQ=255)
aaGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcgcctcc > 1:2447623/1‑90 (MQ=255)
aaGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccctca < 2:2574359/93‑4 (MQ=255)
aaGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccctca < 1:798600/93‑4 (MQ=255)
aaGATTCGCTGGTGCAGGGGCTGGGGAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTc > 2:3568348/1‑93 (MQ=255)
aGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccctcac > 2:1560217/1‑89 (MQ=255)
aGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccccccc > 1:1243203/1‑90 (MQ=255)
aGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGcccccccc > 2:1017212/1‑90 (MQ=255)
aTTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCAccc < 2:4120483/93‑1 (MQ=255)
cGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTaa < 2:858399/93‑1 (MQ=255)
cTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAAcc < 1:3606769/93‑1 (MQ=255)
tGGTGCAGGGTGTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAAccc < 2:3608759/93‑1 (MQ=255)
tGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAAccc < 1:4193091/93‑1 (MQ=255)
gTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCctc < 1:2336584/93‑1 (MQ=255)
gTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCctc < 2:4348133/93‑1 (MQ=255)
cAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTcc < 1:181173/93‑1 (MQ=255)
aGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTccc < 2:221500/93‑1 (MQ=255)
aGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTccc < 2:315429/93‑1 (MQ=255)
aGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTccc > 2:2384158/1‑93 (MQ=255)
ggggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCt < 1:2906252/93‑1 (MQ=255)
gggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTc < 2:2386289/93‑1 (MQ=255)
gggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTc < 1:3797487/93‑1 (MQ=255)
gggCTGAGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTc < 1:230558/93‑1 (MQ=255)
ggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCa < 1:142983/93‑1 (MQ=255)
ggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCa < 2:141578/93‑1 (MQ=255)
gCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCACCCCTAACCc‑ctccctccc > 2:724789/1‑91 (MQ=255)
cTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAgg < 1:813221/93‑1 (MQ=255)
cTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAgg < 2:2965339/93‑1 (MQ=255)
cTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAgg < 1:3793189/93‑1 (MQ=255)
cTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAgg < 2:1176983/93‑1 (MQ=255)
gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGga < 2:3322621/93‑1 (MQ=255)
gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGga < 1:3175822/93‑1 (MQ=255)
ggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGgag < 2:3618960/93‑1 (MQ=255)
gTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGgaga < 1:319214/93‑1 (MQ=255)
gTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGgaga < 1:4606817/93‑1 (MQ=255)
gTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGgaga < 2:1795819/93‑1 (MQ=255)
tAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGagag < 1:4280454/93‑1 (MQ=255)
tAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGagag < 1:454990/93‑1 (MQ=255)
tAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGagag < 1:10784/93‑1 (MQ=255)
aaaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGagagt < 1:4423091/93‑2 (MQ=255)
aaaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAgg < 2:2596444/93‑1 (MQ=255)
aaaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAgg < 2:734271/93‑1 (MQ=255)
aaGAGTTGCCTGCGGCACTGGCTTCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAggg < 2:55951/93‑1 (MQ=255)
agagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAgggg < 2:3957153/93‑1 (MQ=255)
gagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGa < 1:2723173/93‑1 (MQ=255)
agTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAc < 2:3914146/93‑1 (MQ=255)
tGCCTGCGGCACTGGCTCCCAGGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTACCCCTCTCCCTCAGGGAGAGGGGACCGt < 2:1712973/93‑1 (MQ=255)
ccTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTc < 1:2621924/93‑1 (MQ=255)
cTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCg < 2:1149821/93‑1 (MQ=255)
ggCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcgc < 2:3686361/93‑1 (MQ=255)
aCTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgt < 2:3239864/93‑1 (MQ=255)
tGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtat < 1:1043289/93‑1 (MQ=255)
tGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtat < 1:1381892/93‑1 (MQ=255)
tGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtat < 2:412186/93‑1 (MQ=255)
tGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtat < 1:1885395/93‑1 (MQ=255)
ggCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatg < 1:1551997/93‑1 (MQ=255)
ggCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatg < 2:3604712/93‑1 (MQ=255)
gCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatgt < 1:4542186/93‑1 (MQ=255)
gCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatgt < 1:3157979/93‑1 (MQ=255)
tCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTAc < 1:2058270/93‑1 (MQ=255)
tCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCCAACCCTCTCCCCCAGGGAGAGGGGGCCGTTTGGCGCtgtatttat > 1:3946222/1‑92 (MQ=37)
tGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCt < 2:4348785/93‑1 (MQ=255)
cGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCC‑CCCCCCCACCCCCTCCCCCAGGGAGAGGGGGGCGGTCTGGGCTGTATGTACTCCCCCAc > 1:2341873/1‑93 (MQ=255)
cGAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAc < 1:430283/93‑1 (MQ=255)
gAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTTACCCTAACCCTCTCCCTCCGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAct > 2:585677/1‑93 (MQ=38)
gAAAGGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAct < 1:1591157/93‑1 (MQ=255)
acaGGGAATGCGGCATAGTCATGTGCG‑CCCCTCACCCTAGCCCTCTCCCTCAGGGAGAGGAGACCGTGCGACGCTGTATGTACTCCCTCActc < 2:1806546/91‑1 (MQ=255)
aaaCGGAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCActc < 2:2396137/93‑1 (MQ=255)
ggAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaa < 2:4476173/93‑1 (MQ=255)
gAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa < 2:3553582/93‑1 (MQ=255)
gAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa < 2:1907392/93‑1 (MQ=255)
gAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa < 2:3287984/93‑1 (MQ=255)
gAATGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa < 2:4592850/93‑1 (MQ=255)
aaTGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAAc < 2:1578269/93‑1 (MQ=255)
aTGCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACg < 1:4408680/93‑1 (MQ=255)
agCGGCATAGTCGTGTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGa < 1:3348724/92‑1 (MQ=255)
gCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGac < 1:1555214/93‑1 (MQ=255)
gCGGCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGac < 1:841937/93‑1 (MQ=255)
ggCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGacac < 2:750071/93‑1 (MQ=255)
ggCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGacac < 2:1710186/93‑1 (MQ=255)
gCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACAcc < 2:4274348/93‑1 (MQ=255)
gCATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACAcc < 1:173308/93‑1 (MQ=255)
cATAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCg < 2:633304/93‑1 (MQ=255)
tAGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCa < 1:4408417/93‑1 (MQ=255)
aGTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAc < 2:376964/93‑1 (MQ=255)
gTCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAct < 1:1462074/93‑1 (MQ=255)
tCGTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCActc < 2:3070340/93‑1 (MQ=255)
gTTTGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCtt < 1:3062306/93‑1 (MQ=255)
tttGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCttt < 2:4650716/93‑1 (MQ=255)
tttGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCttt < 2:2448846/93‑1 (MQ=255)
tttGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCttt < 2:2472382/93‑1 (MQ=255)
ttGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCtttt < 1:3394582/93‑1 (MQ=255)
ttGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCtttt < 1:1029362/93‑1 (MQ=255)
ttGCG‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCttgt < 2:2447623/93‑3 (MQ=255)
|
TTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTT > NC_000913/3778562‑3778742
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT > NC_000913/3778565‑3778751
|
CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCT < SRR4302535.1397739/94‑1 (MQ=60)
CAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCA < SRR4302535.763206/94‑1 (MQ=60)
AAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCccc > SRR4302535.1252081/1‑91 (MQ=60)
AAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCAC < SRR4302535.3194831/94‑1 (MQ=60)
AAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCAC < SRR4302535.804207/94‑1 (MQ=60)
AGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACC < SRR4302535.3825495/94‑1 (MQ=60)
ATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑TCCCCCCCCCC > SRR4302535.473540/1‑94 (MQ=60)
CGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCGCCCCCCCTCAC > SRR4302535.692107/1‑94 (MQ=60)
CTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCC < SRR4302535.3631789/94‑1 (MQ=60)
TGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCT < SRR4302535.4221784/94‑1 (MQ=60)
GGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑GCCCCCCACCCccccccc > SRR4302535.1805608/1‑87 (MQ=60)
GTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCT < SRR4302535.2353304/94‑1 (MQ=60)
CAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCC < SRR4302535.182431/94‑1 (MQ=60)
GGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTC < SRR4302535.2926793/94‑1 (MQ=60)
GGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCcccccccccccccccccccc > SRR4302535.4439767/1‑74 (MQ=60)
GGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCA < SRR4302535.3823665/94‑1 (MQ=60)
GGGCTGAGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCA < SRR4302535.232147/94‑1 (MQ=60)
GGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CGCCCTCccccccacccccccccctc > SRR4302535.2867037/1‑75 (MQ=60)
GGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAG < SRR4302535.143979/94‑1 (MQ=60)
CTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGG < SRR4302535.3819341/94‑1 (MQ=60)
CTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGG < SRR4302535.4293230/94‑1 (MQ=60)
CTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGG < SRR4302535.818921/94‑1 (MQ=60)
GGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAG < SRR4302535.3197798/94‑1 (MQ=60)
GGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCcccccccaccccctccccccccgggg > SRR4302535.4661575/1‑68 (MQ=60)
GTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAG < SRR4302535.321422/94‑1 (MQ=60)
GTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAG < SRR4302535.4638125/94‑1 (MQ=60)
TAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCctccccccccccctccccccctcggggg > SRR4302535.1315271/1‑66 (MQ=60)
TAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGG < SRR4302535.4309742/94‑1 (MQ=60)
TAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGG < SRR4302535.10867/94‑1 (MQ=60)
TAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGG < SRR4302535.458175/94‑1 (MQ=60)
AAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCaccccccccccccccccccccccgacggg > SRR4302535.166138/1‑65 (MQ=60)
AAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGTG < SRR4302535.4453382/94‑1 (MQ=60)
AAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGAGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCcccccccccccccccccccccccggagggg > SRR4302535.1259923/1‑64 (MQ=60)
AGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGA < SRR4302535.2326697/94‑1 (MQ=60)
GAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAC < SRR4302535.2742625/94‑1 (MQ=60)
AGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCcccccccccccccccccccccccggaggggggg > SRR4302535.3690635/1‑61 (MQ=60)
CCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCG < SRR4302535.2640720/94‑1 (MQ=60)
CACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCccccccccccccccccccccccccgcggggggcgggggggcgggg > SRR4302535.3483664/1‑49 (MQ=60)
CACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCcacccccaccccctcccccacggggaggggacccgtcggggccgt > SRR4302535.1552112/1‑49 (MQ=60)
CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTAT < SRR4302535.1421664/94‑1 (MQ=60)
CTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTAT < SRR4302535.3786161/94‑1 (MQ=60)
TGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATG < SRR4302535.1050684/94‑1 (MQ=60)
TGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATG < SRR4302535.1898980/94‑1 (MQ=60)
TGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATG < SRR4302535.1391751/94‑1 (MQ=60)
GGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGT < SRR4302535.816608/94‑1 (MQ=60)
GGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGT < SRR4302535.1563177/94‑1 (MQ=60)
GCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTA < SRR4302535.3179899/94‑1 (MQ=60)
GCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTA < SRR4302535.4573255/94‑1 (MQ=60)
CTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTAC < SRR4302535.10963/94‑1 (MQ=60)
CTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCCAACCCTCTCCCCCAGGGAGAGGGGGCCGTTTGGCGCTGTATttat > SRR4302535.3973170/1‑90 (MQ=60)
TCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCccccccccccccccccccccccgcgaggggggcgggcggcgccgctgtttct > SRR4302535.2950227/1‑42 (MQ=60)
TCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACT < SRR4302535.2073100/94‑1 (MQ=60)
TCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACT < SRR4302535.1731395/94‑1 (MQ=60)
CCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCcccccccccccccccccccccccgggggggggcggggtgcgcggtgtgtagtc > SRR4302535.583084/1‑41 (MQ=60)
CCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCcccccccacccccccccccccccccgggggggggggcggggcgcagtgttctc > SRR4302535.3024446/1‑41 (MQ=60)
CATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCCAACCCTCTCCCTCCGGGAGAGGGGGCCGTTCGGCGCTGTATGTACTCCC > SRR4302535.2401987/1‑94 (MQ=60)
ATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCccgccccaccccctctccccctgccaggggggaggtcttcgcgcgaggcacttgct > SRR4302535.4596862/1‑38 (MQ=60)
TGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCccccctaaccacctcccccccggggtggggaccgtactgcgcggcgtgttccgcctc > SRR4302535.1584780/1‑37 (MQ=60)
GCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCC‑CCCCCCCACCCCCTCCCCCAGGGAGAGGGGGGCGGTCTGGGCTGTATGTACTCCCCCAC > SRR4302535.2358629/1‑94 (MQ=24)
CGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACT < SRR4302535.433275/94‑1 (MQ=60)
GAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTC < SRR4302535.1602637/94‑1 (MQ=60)
AAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCccccacacccccccactcccgcggggaccgagacgggcggcgggtagtctctccttccctcc > SRR4302535.558207/1‑32 (MQ=60)
AAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCccccccccacccccccccccccccgggggggcggcgaggcggtgggtgttgtctccctcctct > SRR4302535.1195146/1‑31 (MQ=60)
AGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCccccccccccccctccctcccggggagggggggggtcggcgggcgctggtttttctccccccca > SRR4302535.4646243/1‑30 (MQ=60)
AGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCccccccccccccccccccccccccgccgcgggggcgctgcggcgggtgcgtgtctcccctccgc > SRR4302535.4193325/1‑30 (MQ=60)
GGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAA < SRR4302535.1862967/94‑1 (MQ=60)
ATGCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGA < SRR4302535.4438849/94‑1 (MQ=60)
AGCGGCATAGTCGTGTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGAC < SRR4302535.3372052/94‑1 (MQ=60)
GCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACA < SRR4302535.1566422/94‑1 (MQ=60)
GCGGCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACA < SRR4302535.847847/94‑1 (MQ=60)
GCATAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCG < SRR4302535.174506/94‑1 (MQ=60)
TAGTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAC < SRR4302535.4438584/94‑1 (MQ=60)
GTCGTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC < SRR4302535.1472549/94‑1 (MQ=60)
GTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTT < SRR4302535.3083718/94‑1 (MQ=60)
GTTTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTT < SRR4302535.4466457/94‑1 (MQ=60)
TTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTT < SRR4302535.3418200/94‑1 (MQ=60)
TTGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTT < SRR4302535.1036669/94‑1 (MQ=60)
TGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTT < SRR4302535.3916270/94‑1 (MQ=60)
TGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTT < SRR4302535.2755959/94‑1 (MQ=60)
TGCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTT < SRR4302535.761633/94‑1 (MQ=60)
GCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTT < SRR4302535.1496746/94‑1 (MQ=60)
GCG‑‑‑‑‑‑CCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTT < SRR4302535.3197676/94‑1 (MQ=60)
cgCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTC < SRR4302535.4236234/92‑1 (MQ=60)
GCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT < SRR4302535.2030295/94‑1 (MQ=60)
CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC < SRR4302535.546610/94‑1 (MQ=60)
CCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC < SRR4302535.2848165/94‑1 (MQ=60)
CTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT > SRR4302535.4249639/1‑94 (MQ=60)
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CGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCG‑‑‑‑‑CCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCT > NC_000913/3778565‑3778751
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
