Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,804,546	T→C	E50G (GAG→GGG)	rfaG ←	glucosyltransferase I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,804,546	0	T	C	100.0%	774.6 / NA	238	E50G (GAG→GGG)	rfaG	glucosyltransferase I
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (107/131); total (107/131)

Only 100 of 238 total aligned reads displayed.

GGATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCTCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATGCGCATA  >  NC_000913/3804456‑3804635

 gATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCaa                                                                                        <  1:4133694/93‑1 (MQ=255)

 gATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCaa                                                                                        >  1:4237904/1‑93 (MQ=255)

  aTGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGTCTTAACTGGCACCTGAATAAGCCCaaa                                                                                       >  1:20416/1‑93 (MQ=255)

  aTGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCaaa                                                                                       <  2:4323607/93‑1 (MQ=255)

  aTGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCaaa                                                                                       <  1:1648810/93‑1 (MQ=255)

  aTGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCaaa                                                                                       <  1:4589578/93‑1 (MQ=255)

   tGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAAt                                                                                      <  1:2298637/93‑1 (MQ=255)

      tctTTGAGATGATTTTGTACGCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCt                                                                                   <  1:3406042/93‑1 (MQ=255)

      tctTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCt                                                                                   <  2:2411465/93‑1 (MQ=255)

      tctTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCt                                                                                   <  2:1314416/93‑1 (MQ=255)

      tctTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCt                                                                                   <  1:4362194/93‑1 (MQ=255)

         ttGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTc                                                                                <  1:4056514/93‑1 (MQ=255)

          tGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCg                                                                               <  1:607900/93‑1 (MQ=255)

          tGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCg                                                                               <  1:2034666/93‑1 (MQ=255)

               tgatTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCaa                                                                          >  1:1675582/1‑93 (MQ=255)

                 atTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATc                                                                        <  2:706830/93‑1 (MQ=255)

                 atTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATc                                                                        <  2:2486478/93‑1 (MQ=255)

                 atTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATc                                                                        <  2:402993/93‑1 (MQ=255)

                  ttttGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCg                                                                       <  1:2917236/93‑1 (MQ=255)

                     tGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCt                                                                    <  2:152603/93‑1 (MQ=255)

                      gTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCtt                                                                   >  2:1670237/1‑93 (MQ=255)

                       tACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTc                                                                  >  1:2844277/1‑93 (MQ=255)

                        aCCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTcc                                                                 <  1:2424044/93‑1 (MQ=255)

                            aGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACg                                                             >  1:4306797/1‑93 (MQ=255)

                             ggCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGa                                                            <  2:1140045/93‑1 (MQ=255)

                             ggCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGa                                                            <  1:1166011/93‑1 (MQ=255)

                             ggCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGa                                                            >  1:2716545/1‑93 (MQ=255)

                                ataataTTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACtg                                                         <  2:2078473/93‑1 (MQ=255)

                                ataataTTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACtg                                                         >  2:4671284/1‑93 (MQ=255)

                                ataataTTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACtg                                                         >  1:1503244/1‑93 (MQ=255)

                                ataataTTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACtg                                                         >  1:3324109/1‑93 (MQ=255)

                                ataataTTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACtg                                                         >  1:3461635/1‑93 (MQ=255)

                                 taataTTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACtgt                                                        <  1:2866080/93‑1 (MQ=255)

                                 taataTTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACtgt                                                        >  2:3505362/1‑93 (MQ=255)

                                 taataTTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACtgt                                                        >  2:2559650/1‑93 (MQ=255)

                                  aataTTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACtgtg                                                       >  1:1703518/1‑93 (MQ=255)

                                  aataTTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACtgtg                                                       >  1:3890321/1‑93 (MQ=255)

                                   atatTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTgtgt                                                      >  2:2124409/1‑93 (MQ=255)

                                   atatTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTgtgt                                                      >  1:4018035/1‑93 (MQ=255)

                                    tatTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGta                                                     <  2:1739194/93‑1 (MQ=255)

                                    tatTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGta                                                     <  1:1289598/93‑1 (MQ=255)

                                    tatTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGta                                                     >  1:3185468/1‑93 (MQ=255)

                                    tatTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGta                                                     >  2:2102069/1‑93 (MQ=255)

                                     atTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGtat                                                    >  2:3340978/1‑93 (MQ=255)

                                      ttCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGtata                                                   >  1:1868514/1‑93 (MQ=255)

                                      ttCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGtata                                                   <  1:3969256/93‑1 (MQ=255)

                                      ttCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGtata                                                   <  1:2907079/93‑1 (MQ=255)

                                       tCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGtatat                                                  <  1:2477444/93‑1 (MQ=255)

                                       tCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGtatat                                                  <  2:3963/93‑1 (MQ=255)

                                         tGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATAc                                                >  2:1016096/1‑93 (MQ=255)

                                          gCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATAcc                                               <  2:2612533/93‑1 (MQ=255)

                                           cATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATAccc                                              <  1:1040001/93‑1 (MQ=255)

                                                cGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACa                                         <  2:3034977/93‑1 (MQ=255)

                                                 gTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACAt                                        <  2:3736199/93‑1 (MQ=255)

                                                 gTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACAt                                        <  1:4480807/93‑1 (MQ=255)

                                                 gTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACAt                                        >  1:2505794/1‑93 (MQ=255)

                                                  tCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACAtg                                       >  1:3053174/1‑93 (MQ=255)

                                                  tCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACAtg                                       <  2:2389777/93‑1 (MQ=255)

                                                  tCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGCGTATATACCCGAACAtg                                       >  1:759562/1‑93 (MQ=255)

                                                    cATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACAtggt                                     >  2:4113570/1‑93 (MQ=255)

                                                    cATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACAtggt                                     <  1:1310333/93‑1 (MQ=255)

                                                     aTGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACAtggtg                                    >  1:3498586/1‑93 (MQ=255)

                                                     aTGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACAtggtg                                    >  2:2683628/1‑93 (MQ=255)

                                                      tggttggtATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACAtggtgg                                   >  2:535231/1‑93 (MQ=255)

                                                      tggttggtATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACAtggtgg                                   >  1:2119550/1‑93 (MQ=255)

                                                      tggttggtATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACAtggtgg                                   >  2:3004636/1‑93 (MQ=255)

                                                      tggttggtATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACAtggtgg                                   >  1:3909906/1‑93 (MQ=255)

                                                       ggttggtATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGc                                  <  1:1763830/93‑1 (MQ=255)

                                                       ggttggtATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGc                                  <  1:1252519/93‑1 (MQ=255)

                                                       ggttggtATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGc                                  <  2:1419441/93‑1 (MQ=255)

                                                          tggtAGGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGcccc                               <  2:4331512/93‑1 (MQ=255)

                                                           ggtATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCg                              >  2:4151993/1‑93 (MQ=255)

                                                           ggtATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCg                              <  1:2676364/93‑1 (MQ=255)

                                                           ggtATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCg                              >  2:1820232/1‑93 (MQ=255)

                                                           ggtATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCg                              >  2:1794427/1‑93 (MQ=255)

                                                            gtttGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGt                             >  1:3584176/4‑93 (MQ=255)

                                                               tGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCg                          >  2:3245756/1‑93 (MQ=255)

                                                                gggACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCgg                         >  1:70565/1‑93 (MQ=255)

                                                                 ggACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGc                        <  1:1571556/93‑1 (MQ=255)

                                                                    cTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAAc                     >  2:3634392/1‑93 (MQ=255)

                                                                    cTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAAc                     <  2:2202940/93‑1 (MQ=255)

                                                                     ttAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGACCATGGTGGCCCCGCTCGGCAACt                    >  2:2718153/1‑93 (MQ=255)

                                                                     ttAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACt                    >  1:3011951/1‑93 (MQ=255)

                                                                      tAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTg                   >  1:2873775/1‑93 (MQ=255)

                                                                      tAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTg                   <  1:3848882/93‑1 (MQ=255)

                                                                        aCTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGtt                 <  2:3564748/93‑1 (MQ=255)

                                                                          tGGCACCTGAATACGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGa               >  2:4501709/1‑93 (MQ=255)

                                                                          tGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGa               <  2:3466356/93‑1 (MQ=255)

                                                                          tGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGa               <  2:2905077/93‑1 (MQ=255)

                                                                          tGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGa               >  1:3535656/1‑93 (MQ=255)

                                                                           ggCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGAt              <  1:3037965/93‑1 (MQ=255)

                                                                           ggCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGAt              <  1:1199210/93‑1 (MQ=255)

                                                                             cACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGc            >  2:675338/1‑93 (MQ=255)

                                                                              aCCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCa           >  1:3591879/1‑93 (MQ=255)

                                                                              aCCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCa           <  1:1826504/93‑1 (MQ=255)

                                                                               ccTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCaa          <  2:3843031/93‑1 (MQ=255)

                                                                                  gAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATgc       <  2:289656/93‑1 (MQ=255)

                                                                                  gAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATgc       <  1:2190934/93‑1 (MQ=255)

                                                                                   aaTAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATgcg      <  2:2787601/93‑1 (MQ=255)

                                                                                     tAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATGCGCa    <  2:1982912/93‑1 (MQ=255)

GGATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCTCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATGCGCATA  >  NC_000913/3804456‑3804635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGGGATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCTCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATGCGCATAAAGT  >  NC_000913/3804454‑3804639

CGGGATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCC                                                                                              <  SRR4302535.3967893/94‑1 (MQ=60)

CGGGATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCC                                                                                              >  SRR4302535.2498039/1‑94 (MQ=60)

  GGATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAA                                                                                            >  SRR4302535.3164406/1‑94 (MQ=60)

  GGATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAA                                                                                            >  SRR4302535.4266905/1‑94 (MQ=60)

   GATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGTCTTAACTGGCACCTGAATAAGCCCAAA                                                                                           >  SRR4302535.20568/1‑94 (MQ=60)

   GATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAA                                                                                           <  SRR4302535.4161990/94‑1 (MQ=60)

    ATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAAT                                                                                          <  SRR4302535.28967/94‑1 (MQ=60)

    ATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAAT                                                                                          >  SRR4302535.3060940/1‑94 (MQ=60)

    ATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAAT                                                                                          <  SRR4302535.1787239/94‑1 (MQ=60)

    ATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAAT                                                                                          <  SRR4302535.1660737/94‑1 (MQ=60)

    ATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAAT                                                                                          >  SRR4302535.1632584/1‑94 (MQ=60)

    ATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAAT                                                                                          <  SRR4302535.3615470/94‑1 (MQ=60)

    ATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAAT                                                                                          <  SRR4302535.4620822/94‑1 (MQ=60)

     TGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATG                                                                                         <  SRR4302535.2315082/94‑1 (MQ=60)

       CTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCT                                                                                       <  SRR4302535.3585069/94‑1 (MQ=60)

       CTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCT                                                                                       >  SRR4302535.349000/1‑94 (MQ=60)

       CTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCT                                                                                       >  SRR4302535.2886808/1‑94 (MQ=60)

        TCTTTGAGATGATTTTGTACGCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTT                                                                                      <  SRR4302535.3429749/94‑1 (MQ=60)

        TCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTT                                                                                      >  SRR4302535.1260880/1‑94 (MQ=60)

        TCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTT                                                                                      <  SRR4302535.4392045/94‑1 (MQ=60)

          TTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTC                                                                                    <  SRR4302535.1584590/94‑1 (MQ=60)

           TTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCG                                                                                   <  SRR4302535.2941831/94‑1 (MQ=60)

           TTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCG                                                                                   <  SRR4302535.1295955/94‑1 (MQ=60)

           TTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCG                                                                                   <  SRR4302535.4084285/94‑1 (MQ=60)

            TGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGG                                                                                  <  SRR4302535.612141/94‑1 (MQ=60)

            TGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGG                                                                                  <  SRR4302535.4010414/94‑1 (MQ=60)

            TGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGG                                                                                  <  SRR4302535.2049324/94‑1 (MQ=60)

            TGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGG                                                                                  >  SRR4302535.692819/1‑94 (MQ=60)

             GAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGG                                                                                 <  SRR4302535.3528819/94‑1 (MQ=60)

             GAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGG                                                                                 <  SRR4302535.170241/94‑1 (MQ=60)

                ATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAA                                                                              >  SRR4302535.1687715/1‑94 (MQ=60)

                  GATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATC                                                                            <  SRR4302535.3482517/94‑1 (MQ=60)

                   ATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCG                                                                           <  SRR4302535.2553608/94‑1 (MQ=60)

                   ATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCG                                                                           <  SRR4302535.1875759/94‑1 (MQ=60)

                   ATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCG                                                                           <  SRR4302535.3937989/94‑1 (MQ=60)

                   ATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCG                                                                           <  SRR4302535.1681064/94‑1 (MQ=60)

                    TTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGC                                                                          <  SRR4302535.2937829/94‑1 (MQ=60)

                      TTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCT                                                                        <  SRR4302535.4400243/94‑1 (MQ=60)

                       TGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTT                                                                       <  SRR4302535.4378617/94‑1 (MQ=60)

                        GTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTC                                                                      >  SRR4302535.2864443/1‑94 (MQ=60)

                         TACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCC                                                                     <  SRR4302535.4620490/94‑1 (MQ=60)

                         TACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCC                                                                     >  SRR4302535.3914527/1‑94 (MQ=60)

                          ACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCC                                                                    <  SRR4302535.2441509/94‑1 (MQ=60)

                            CCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCAC                                                                  <  SRR4302535.172748/94‑1 (MQ=60)

                             CAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACG                                                                 >  SRR4302535.4336262/1‑94 (MQ=60)

                             CAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACG                                                                 <  SRR4302535.4335736/94‑1 (MQ=60)

                              AGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGA                                                                <  SRR4302535.3527416/94‑1 (MQ=60)

                              AGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGA                                                                >  SRR4302535.2735952/1‑94 (MQ=60)

                               GGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGAC                                                               <  SRR4302535.1492079/94‑1 (MQ=60)

                               GGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGAC                                                               <  SRR4302535.1174338/94‑1 (MQ=60)

                               GGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGAC                                                               <  SRR4302535.4282011/94‑1 (MQ=60)

                                GCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACT                                                              <  SRR4302535.2936307/94‑1 (MQ=60)

                                 CATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTG                                                             >  SRR4302535.3836184/1‑94 (MQ=60)

                                 CATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTG                                                             >  SRR4302535.3347235/1‑94 (MQ=60)

                                 CATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTG                                                             >  SRR4302535.3485704/1‑94 (MQ=60)

                                 CATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTG                                                             >  SRR4302535.1514058/1‑94 (MQ=60)

                                  ATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGT                                                            >  SRR4302535.1563801/1‑94 (MQ=60)

                                   TAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTG                                                           >  SRR4302535.3916992/1‑94 (MQ=60)

                                   TAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTG                                                           <  SRR4302535.2886381/94‑1 (MQ=60)

                                   TAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTG                                                           >  SRR4302535.1715834/1‑94 (MQ=60)

                                   TAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTG                                                           <  SRR4302535.4080624/94‑1 (MQ=60)

                                    AATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGT                                                          >  SRR4302535.2402700/1‑94 (MQ=60)

                                    AATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGT                                                          >  SRR4302535.285926/1‑94 (MQ=60)

                                    AATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGT                                                          >  SRR4302535.4045524/1‑94 (MQ=60)

                                     ATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTA                                                         >  SRR4302535.345308/1‑94 (MQ=60)

                                     ATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTA                                                         >  SRR4302535.3207492/1‑94 (MQ=60)

                                      TATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTAT                                                        <  SRR4302535.1298787/94‑1 (MQ=60)

                                       ATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATA                                                       >  SRR4302535.2183061/1‑94 (MQ=60)

                                       ATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATA                                                       >  SRR4302535.1881982/1‑94 (MQ=60)

                                        TTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATAT                                                      <  SRR4302535.2090713/94‑1 (MQ=60)

                                        TTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATAT                                                      <  SRR4302535.2927625/94‑1 (MQ=60)

                                        TTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATAT                                                      <  SRR4302535.3996365/94‑1 (MQ=60)

                                        TTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATAT                                                      <  SRR4302535.4071830/94‑1 (MQ=60)

                                         TCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATA                                                     <  SRR4302535.2495311/94‑1 (MQ=60)

                                         TCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATA                                                     <  SRR4302535.175375/94‑1 (MQ=60)

                                          CTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATAC                                                    <  SRR4302535.250996/94‑1 (MQ=60)

                                          CTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATAC                                                    <  SRR4302535.1450562/94‑1 (MQ=60)

                                            GCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCC                                                  <  SRR4302535.439286/94‑1 (MQ=60)

                                             CATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCG                                                 <  SRR4302535.1047379/94‑1 (MQ=60)

                                             CATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCG                                                 >  SRR4302535.2054546/1‑94 (MQ=60)

                                                 GCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACA                                             <  SRR4302535.2731040/94‑1 (MQ=60)

                                                  CGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACAT                                            >  SRR4302535.2523858/1‑94 (MQ=60)

                                                   GTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATG                                           >  SRR4302535.3074554/1‑94 (MQ=60)

                                                   GTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATG                                           <  SRR4302535.4511563/94‑1 (MQ=60)

                                                   GTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATG                                           <  SRR4302535.2858317/94‑1 (MQ=60)

                                                   GTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGCGTATATACCCGAACATG                                           >  SRR4302535.764915/1‑94 (MQ=60)

                                                     CCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGT                                         <  SRR4302535.314703/94‑1 (MQ=60)

                                                     CCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGT                                         >  SRR4302535.2481074/1‑94 (MQ=60)

                                                      CATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTG                                        >  SRR4302535.2420909/1‑94 (MQ=60)

                                                      CATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTG                                        <  SRR4302535.1215958/94‑1 (MQ=60)

                                                      CATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTG                                        <  SRR4302535.1319698/94‑1 (MQ=60)

                                                      CATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTG                                        >  SRR4302535.3522901/1‑94 (MQ=60)

                                                       ATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGG                                       >  SRR4302535.2134837/1‑94 (MQ=60)

                                                       ATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGG                                       >  SRR4302535.3936682/1‑94 (MQ=60)

                                                        TGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGC                                      >  SRR4302535.2091665/1‑94 (MQ=60)

                                                         GGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCC                                     <  SRR4302535.257233/94‑1 (MQ=60)

                                                         GGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCC                                     <  SRR4302535.1261475/94‑1 (MQ=60)

                                                         GGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCC                                     <  SRR4302535.1776610/94‑1 (MQ=60)

                                                         GGTTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCC                                     >  SRR4302535.622624/1‑94 (MQ=60)

                                                           TTGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCC                                   <  SRR4302535.3637447/94‑1 (MQ=60)

                                                            TGGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCG                                  >  SRR4302535.117779/1‑94 (MQ=60)

                                                             GGTTTGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGT                                 >  SRR4302535.3609034/1‑94 (MQ=60)

                                                             GGTATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGT                                 <  SRR4302535.2695512/94‑1 (MQ=60)

                                                               TATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGC                               <  SRR4302535.504170/94‑1 (MQ=60)

                                                                ATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCG                              >  SRR4302535.2922393/1‑94 (MQ=60)

                                                                ATGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCG                              >  SRR4302535.2880819/1‑94 (MQ=60)

                                                                 TGGGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGG                             >  SRR4302535.71081/1‑94 (MQ=60)

                                                                   GGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCA                           <  SRR4302535.1582900/94‑1 (MQ=60)

                                                                   GGACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCA                           >  SRR4302535.75773/1‑94 (MQ=60)

                                                                    GACTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAA                          >  SRR4302535.4160130/1‑94 (MQ=60)

                                                                      CTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACT                        <  SRR4302535.3019343/94‑1 (MQ=60)

                                                                      CTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACT                        >  SRR4302535.3033055/1‑94 (MQ=60)

                                                                      CTTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACT                        <  SRR4302535.4223953/94‑1 (MQ=60)

                                                                       TTAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTG                       >  SRR4302535.2894137/1‑94 (MQ=60)

                                                                        TAACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGT                      <  SRR4302535.3875371/94‑1 (MQ=60)

                                                                         AACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTT                     <  SRR4302535.3974013/94‑1 (MQ=60)

                                                                          ACTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTG                    <  SRR4302535.3215011/94‑1 (MQ=60)

                                                                           CTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGA                   >  SRR4302535.3560201/1‑94 (MQ=60)

                                                                           CTGGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGA                   >  SRR4302535.3388119/1‑94 (MQ=60)

                                                                             GGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATG                 <  SRR4302535.3059246/94‑1 (MQ=60)

                                                                             GGCACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATG                 <  SRR4302535.1207801/94‑1 (MQ=60)

                                                                               CACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCA               >  SRR4302535.1912710/1‑94 (MQ=60)

                                                                               CACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCA               >  SRR4302535.3616791/1‑94 (MQ=60)

                                                                                ACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAA              >  SRR4302535.996495/1‑94 (MQ=60)

                                                                                ACCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAA              <  SRR4302535.1839689/94‑1 (MQ=60)

                                                                                 CCTGAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAAT             <  SRR4302535.1934968/94‑1 (MQ=60)

                                                                                    GAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATGCG          <  SRR4302535.392759/94‑1 (MQ=60)

                                                                                    GAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATGCG          <  SRR4302535.30553/94‑1 (MQ=60)

                                                                                    GAATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATGCG          <  SRR4302535.2206530/94‑1 (MQ=60)

                                                                                     AATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATGCGC         >  SRR4302535.227378/1‑94 (MQ=60)

                                                                                      ATAAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATGCGCA        >  SRR4302535.1050142/1‑94 (MQ=60)

                                                                                        AAGCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATGCGCATA      >  SRR4302535.1299330/1‑94 (MQ=60)

                                                                                          GCCCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATGCGCATAAA    <  SRR4302535.1790028/94‑1 (MQ=60)

                                                                                            CCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATGCGCATAAAGT  >  SRR4302535.4147755/1‑94 (MQ=60)

                                                                                            CCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATGCGCATAAAGT  <  SRR4302535.183116/94‑1 (MQ=60)

                                                                                            CCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATGCGCATAAAGT  >  SRR4302535.1258774/1‑94 (MQ=60)

CGGGATGCTCTTTGAGATGATTTTGTACCCAGGCATAATATTCTGCATTGCGTCCATGGTTGGTATGGGACTTAACTGGCACCTGAATAAGCTCAAATGCTTTCGGGCAATCGCCTTCCCACGACTGTGTATATACCCGAACATGGTGGCCCCGTGCGGCAACTGTTGATGCAATGCGCATAAAGT  >  NC_000913/3804454‑3804639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`