Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,816,555 (G)5→6 coding (55/618 nt) b3646 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,816,5501.G100.0% 716.5 / NA 226T17R (ACG→AGG) b3646hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (118/108);  total (118/108)

Only 100 of 250 total aligned reads displayed.

CACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑GGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGT  >  NC_000913/3816458‑3816637
                                                                                             |                                                                                       
 acaAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGATCCATGCTGTTACACATTTTGTATTTGGTTGGCATTAGTGCCGAAGCCATGAC‑g                                                                                        >  2:821546/1‑93 (MQ=255)
 acaAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑g                                                                                        <  1:313347/93‑1 (MQ=255)
 acaAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑g                                                                                        >  1:4675744/1‑93 (MQ=255)
   aaaTCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑ggg                                                                                      <  1:329823/93‑1 (MQ=255)
   aaaTCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑ggg                                                                                      <  2:698965/93‑1 (MQ=255)
    aaTCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑gggg                                                                                     >  1:3168101/1‑93 (MQ=255)
     aTCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑ggggg                                                                                    >  1:2081922/1‑93 (MQ=255)
        gCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑ggggggcg                                                                                 >  1:4625747/1‑90 (MQ=255)
         cTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑ggggggcgc                                                                                >  1:505121/1‑89 (MQ=255)
                gCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTggcggc                                                                          >  2:349566/1‑93 (MQ=255)
                    gacagaTTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGga                                                                      >  2:3375713/1‑93 (MQ=255)
                      cagaTTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGgacg                                                                    >  1:2421300/1‑93 (MQ=255)
                       agaTTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGgacga                                                                   <  1:1496407/93‑1 (MQ=255)
                        gaTTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGTCCGgacgac                                                                  >  1:741624/1‑93 (MQ=255)
                        gaTTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGgacgac                                                                  <  2:1813393/93‑1 (MQ=255)
                        gaTTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGgacgac                                                                  <  2:1173948/93‑1 (MQ=255)
                        gaTTTTTAGGAAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGgacgac                                                                  <  2:2688872/93‑1 (MQ=255)
                         aTTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGacgacg                                                                 <  2:2828697/93‑1 (MQ=255)
                            tttAGGGAGAGAACCATGCTGTTACACATTTTGCATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGTCGGACGACGgcg                                                              >  2:116445/1‑93 (MQ=255)
                             ttAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGgcgc                                                             <  2:2352711/93‑1 (MQ=255)
                             ttAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGgcgc                                                             >  1:690823/1‑93 (MQ=255)
                              tAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCa                                                            <  1:4169454/93‑1 (MQ=255)
                               aGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCAt                                                           >  2:2999213/1‑93 (MQ=255)
                                gggAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATg                                                          <  2:1289147/93‑1 (MQ=255)
                                gggAGAGAACCATGCTGTTACACATTTTGCATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCCTg                                                          >  2:1106680/1‑93 (MQ=255)
                                 ggAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATgg                                                         >  2:570905/1‑93 (MQ=255)
                                  gagagaACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGa                                                        >  2:4487793/1‑93 (MQ=255)
                                   agagaACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGAt                                                       >  1:4491009/1‑93 (MQ=255)
                                    gagaACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGGATGGaaa                                                      >  2:4019458/1‑91 (MQ=255)
                                    gagaACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATa                                                      <  2:1316632/93‑1 (MQ=255)
                                      gaACCATGCTGTTACACATTTTGTATTTGGTTGGTATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACa                                                    <  2:3203707/93‑1 (MQ=255)
                                      gaACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACa                                                    >  2:2625233/1‑93 (MQ=255)
                                      gaACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACa                                                    <  1:4353663/93‑1 (MQ=255)
                                        aCCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGAAGACGGCGAATGGATACAtt                                                  >  2:1880160/1‑93 (MQ=255)
                                         ccATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACAttt                                                 <  2:3111755/93‑1 (MQ=255)
                                          cATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTg                                                >  2:378122/1‑93 (MQ=255)
                                          cATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTg                                                <  2:1091270/93‑1 (MQ=255)
                                          cATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTg                                                >  2:750218/1‑93 (MQ=255)
                                           aTGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTgg                                               <  1:970075/93‑1 (MQ=255)
                                           aTGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTgg                                               <  2:2437447/93‑1 (MQ=255)
                                           aTGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTgg                                               >  2:4439479/1‑93 (MQ=255)
                                           aTGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTgg                                               <  2:4631510/93‑1 (MQ=255)
                                           aTGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTgc                                               >  1:4441446/1‑92 (MQ=255)
                                               tGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTa                                           >  2:3241000/1‑93 (MQ=255)
                                               tGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTa                                           >  1:1429462/1‑93 (MQ=255)
                                               tGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTa                                           >  1:3628365/1‑93 (MQ=255)
                                               tGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTa                                           <  1:1737971/93‑1 (MQ=255)
                                               tGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTa                                           >  2:1436792/1‑93 (MQ=255)
                                                gTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTaa                                          >  2:3186707/1‑93 (MQ=255)
                                                gTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTaa                                          >  1:2279892/1‑93 (MQ=255)
                                                gTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTaa                                          >  1:2502133/1‑93 (MQ=255)
                                                  tACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAatt                                        >  1:4049025/1‑93 (MQ=255)
                                                  tACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAatt                                        <  1:2157196/93‑1 (MQ=255)
                                                     acaTTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAattatt                                     >  2:1611102/1‑93 (MQ=255)
                                                      caTTTTTTATTTGGTGGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAattatta                                    <  2:4435567/93‑1 (MQ=255)
                                                      caTTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAattatta                                    >  2:469500/1‑93 (MQ=255)
                                                      aaTTTTGTATTTGGTTGGCATGACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAattatta                                    <  2:228068/92‑1 (MQ=255)
                                                       aTTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAattattat                                   <  1:4570606/93‑1 (MQ=255)
                                                       aTTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAattattat                                   >  1:1328023/1‑93 (MQ=255)
                                                        ttttGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAattattatt                                  <  2:1794866/93‑1 (MQ=255)
                                                        ttttGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAattattatt                                  <  1:1979852/93‑1 (MQ=255)
                                                        ttttGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAattattatt                                  >  2:4113140/1‑93 (MQ=255)
                                                        ttttGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAattattatt                                  <  2:3736602/93‑1 (MQ=255)
                                                         tttGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTg                                 <  1:2974259/93‑1 (MQ=255)
                                                          ttGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGc                                <  2:879740/93‑1 (MQ=255)
                                                          ttGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGc                                >  2:2101636/1‑93 (MQ=255)
                                                          ttGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGc                                >  1:2773521/1‑93 (MQ=255)
                                                           tGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCg                               >  1:968232/1‑93 (MQ=255)
                                                             tATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGAc                             <  2:3029378/93‑1 (MQ=255)
                                                             tATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGAc                             <  1:3225733/93‑1 (MQ=255)
                                                             tATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGAc                             <  1:3528170/93‑1 (MQ=255)
                                                             tATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGAc                             >  2:3582202/1‑93 (MQ=255)
                                                             tATTTGGTTGGCATGACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGAc                             <  2:4155609/93‑1 (MQ=255)
                                                               tttGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCg                           >  1:2872573/1‑93 (MQ=255)
                                                                  ggttggCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCa                        >  1:1810955/1‑93 (MQ=255)
                                                                   gttggCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGTCAc                       >  1:390970/1‑93 (MQ=255)
                                                                   gttggCATTACTGCCGAAGCCAGGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCAc                       <  2:3961678/93‑1 (MQ=255)
                                                                         aTTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAAt                 <  1:1141452/93‑1 (MQ=255)
                                                                         aTTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAAt                 <  1:2586331/93‑1 (MQ=255)
                                                                         aTTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAAt                 <  1:368454/93‑1 (MQ=255)
                                                                         aTTACTGCCGAAGCAATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAAt                 <  1:1014969/93‑1 (MQ=255)
                                                                          ttACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAAtt                <  2:4330826/93‑1 (MQ=255)
                                                                            aCTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTgg              <  2:4256472/93‑1 (MQ=255)
                                                                             cTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGc             <  1:638443/93‑1 (MQ=255)
                                                                             cTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGc             >  2:3391365/1‑93 (MQ=255)
                                                                                  gAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAgg        <  2:505121/93‑1 (MQ=255)
                                                                                  gAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAgg        >  1:1925394/1‑93 (MQ=255)
                                                                                  gAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAgg        >  1:4004644/1‑93 (MQ=255)
                                                                                   aaGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAggg       <  1:456139/93‑1 (MQ=255)
                                                                                   aaGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAggg       >  1:4021276/1‑93 (MQ=255)
                                                                                   aaGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAggg       >  2:2061991/1‑93 (MQ=255)
                                                                                    aGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAgggg      >  1:1245815/1‑92 (MQ=255)
                                                                                    aGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGt      <  2:2793717/93‑1 (MQ=255)
                                                                                    aGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGt      >  2:453421/1‑93 (MQ=255)
                                                                                    aGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGt      >  1:3969614/1‑93 (MQ=255)
                                                                                     gCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTc     <  2:2486331/93‑1 (MQ=255)
                                                                                        aTGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGt  <  1:3349703/93‑1 (MQ=255)
                                                                                        aTGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGt  <  1:4224635/93‑1 (MQ=255)
                                                                                        aTGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGt  <  2:1902758/93‑1 (MQ=255)
                                                                                        aTGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGt  <  1:2633901/93‑1 (MQ=255)
                                                                                             |                                                                                       
CACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑GGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGT  >  NC_000913/3816458‑3816637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑GGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTGCGCGATATTC  >  NC_000913/3816462‑3816648
                                                                                              |                                                                                             
AATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑GGGGG                                                                                               <  SRR4302535.724926/94‑1 (MQ=60)
AATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑GGGGG                                                                                               >  SRR4302535.2096923/1‑94 (MQ=60)
 ATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑GGGGGG                                                                                              >  SRR4302535.4148538/1‑94 (MQ=60)
   CGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑GGGGGgcg                                                                                            >  SRR4302535.4657152/1‑91 (MQ=60)
    GCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGC                                                                                            >  SRR4302535.508652/1‑94 (MQ=60)
      TACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTG                                                                                          >  SRR4302535.3199244/1‑94 (MQ=60)
        CCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGC                                                                                        <  SRR4302535.1426380/94‑1 (MQ=60)
          CTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGG                                                                                      >  SRR4302535.2835824/1‑94 (MQ=60)
          CTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGG                                                                                      >  SRR4302535.1398828/1‑94 (MQ=60)
              CAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGG                                                                                  <  SRR4302535.2600153/94‑1 (MQ=60)
              CAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGG                                                                                  >  SRR4302535.3206713/1‑94 (MQ=60)
               AGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGA                                                                                 >  SRR4302535.1159791/1‑94 (MQ=60)
                GACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGAC                                                                                <  SRR4302535.975795/94‑1 (MQ=60)
                 ACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACG                                                                               >  SRR4302535.2438736/1‑94 (MQ=60)
                   AGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGTCCGGACGAC                                                                             >  SRR4302535.746834/1‑94 (MQ=60)
                   AGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGAC                                                                             <  SRR4302535.1507170/94‑1 (MQ=60)
                   AGATTTATAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGCCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGAC                                                                             <  SRR4302535.1443056/94‑1 (MQ=60)
                     ATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGG                                                                           >  SRR4302535.2797665/1‑94 (MQ=60)
                     ATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGG                                                                           >  SRR4302535.4276554/1‑94 (MQ=60)
                      TTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGC                                                                          >  SRR4302535.1150826/1‑94 (MQ=60)
                        TTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGC                                                                        >  SRR4302535.695664/1‑94 (MQ=60)
                          TAGGGAGAGACCCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCAT                                                                      <  SRR4302535.2957103/94‑1 (MQ=60)
                          TAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCAT                                                                      <  SRR4302535.4198005/94‑1 (MQ=60)
                           AGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATG                                                                     <  SRR4302535.4657345/94‑1 (MQ=60)
                            GGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCAGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGG                                                                    >  SRR4302535.3337755/1‑94 (MQ=60)
                              GAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGAT                                                                  <  SRR4302535.1614246/94‑1 (MQ=60)
                              GAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGAT                                                                  <  SRR4302535.2245485/94‑1 (MQ=60)
                              GAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGAT                                                                  >  SRR4302535.4521837/1‑94 (MQ=60)
                               AGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATA                                                                 >  SRR4302535.3166755/1‑94 (MQ=60)
                               AGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATA                                                                 >  SRR4302535.670626/1‑94 (MQ=60)
                               AGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATA                                                                 >  SRR4302535.4223142/1‑94 (MQ=60)
                                GAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATAC                                                                >  SRR4302535.2131712/1‑94 (MQ=60)
                                 AGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACA                                                               <  SRR4302535.3947839/94‑1 (MQ=60)
                                 AGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACA                                                               >  SRR4302535.4056749/1‑94 (MQ=60)
                                 AGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACA                                                               >  SRR4302535.4458821/1‑94 (MQ=60)
                                  GAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACAT                                                              >  SRR4302535.504083/1‑94 (MQ=60)
                                  GAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACAT                                                              <  SRR4302535.4383459/94‑1 (MQ=60)
                                   AACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATT                                                             >  SRR4302535.2231529/1‑94 (MQ=60)
                                   AACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATT                                                             <  SRR4302535.4595842/94‑1 (MQ=60)
                                    ACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTT                                                            >  SRR4302535.2471546/1‑94 (MQ=60)
                                     CCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTG                                                           >  SRR4302535.4549667/1‑94 (MQ=60)
                                     CCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTG                                                           <  SRR4302535.1054088/94‑1 (MQ=60)
                                      CATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGG                                                          >  SRR4302535.4471897/1‑94 (MQ=60)
                                      CATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGC                                                          >  SRR4302535.4471898/1‑94 (MQ=60)
                                       ATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGC                                                         <  SRR4302535.976962/94‑1 (MQ=60)
                                        TGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCG                                                        <  SRR4302535.421181/94‑1 (MQ=60)
                                          CTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTA                                                      >  SRR4302535.3653512/1‑94 (MQ=60)
                                          CTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTA                                                      >  SRR4302535.1439660/1‑94 (MQ=60)
                                          CTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTA                                                      >  SRR4302535.3587811/1‑94 (MQ=60)
                                           TGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAA                                                     >  SRR4302535.2520177/1‑94 (MQ=60)
                                           TGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAA                                                     >  SRR4302535.2501362/1‑94 (MQ=60)
                                           TGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAA                                                     <  SRR4302535.1750532/94‑1 (MQ=60)
                                           TGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAA                                                     >  SRR4302535.2296176/1‑94 (MQ=60)
                                             TTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATT                                                   >  SRR4302535.4076745/1‑94 (MQ=60)
                                             TTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATT                                                   <  SRR4302535.4628322/94‑1 (MQ=60)
                                              TACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTA                                                  <  SRR4302535.4022957/94‑1 (MQ=60)
                                              TACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTA                                                  <  SRR4302535.2172703/94‑1 (MQ=60)
                                              TACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTA                                                  >  SRR4302535.3023712/1‑94 (MQ=60)
                                               ACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATGCATTTGGCGTAATTAT                                                 >  SRR4302535.1875532/1‑94 (MQ=60)
                                               ACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTAT                                                 <  SRR4302535.2353061/94‑1 (MQ=60)
                                                  CATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTAT                                              >  SRR4302535.1712444/1‑94 (MQ=60)
                                                  CATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTAT                                              <  SRR4302535.3662013/94‑1 (MQ=60)
                                                  CATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTAT                                              >  SRR4302535.1337500/1‑94 (MQ=60)
                                                  CATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTAT                                              <  SRR4302535.4534487/94‑1 (MQ=60)
                                                   ATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATT                                             >  SRR4302535.3423343/1‑94 (MQ=60)
                                                   ATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATT                                             <  SRR4302535.4601772/94‑1 (MQ=60)
                                                   ATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATT                                             >  SRR4302535.3931970/1‑94 (MQ=60)
                                                   ATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTAGCGTAATTATTATT                                             >  SRR4302535.3333295/1‑94 (MQ=60)
                                                    TTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTG                                            <  SRR4302535.1994107/94‑1 (MQ=60)
                                                    TTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTG                                            <  SRR4302535.3850420/94‑1 (MQ=60)
                                                     TTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGC                                           >  SRR4302535.3563840/1‑94 (MQ=60)
                                                     TTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGC                                           >  SRR4302535.2793269/1‑94 (MQ=60)
                                                     TTTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGC                                           <  SRR4302535.2995135/94‑1 (MQ=60)
                                                      TTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCG                                          <  SRR4302535.2002652/94‑1 (MQ=60)
                                                      TTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCG                                          >  SRR4302535.975112/1‑94 (MQ=60)
                                                      TTGTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCG                                          <  SRR4302535.1982829/94‑1 (MQ=60)
                                                        GTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGAC                                        >  SRR4302535.508112/1‑94 (MQ=60)
                                                        GTATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGAC                                        >  SRR4302535.65940/1‑94 (MQ=60)
                                                         TATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACC                                       >  SRR4302535.1316903/1‑94 (MQ=60)
                                                         TATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACC                                       <  SRR4302535.3248096/94‑1 (MQ=60)
                                                         TATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACC                                       <  SRR4302535.3552671/94‑1 (MQ=60)
                                                         TATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACC                                       >  SRR4302535.1821269/1‑94 (MQ=60)
                                                         TATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACC                                       >  SRR4302535.3318471/1‑94 (MQ=60)
                                                          ATTTGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCG                                      >  SRR4302535.2892929/1‑94 (MQ=60)
                                                             TGGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCA                                   >  SRR4302535.1824052/1‑94 (MQ=60)
                                                              GGTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGTCAC                                  >  SRR4302535.393693/1‑94 (MQ=60)
                                                               GTTGGCATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACC                                 >  SRR4302535.2634175/1‑94 (MQ=60)
                                                                    CATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAAT                            >  SRR4302535.4646177/1‑94 (MQ=60)
                                                                    CATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAAT                            <  SRR4302535.305376/94‑1 (MQ=60)
                                                                     ATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCCATT                           >  SRR4302535.2655697/1‑94 (MQ=60)
                                                                     ATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATT                           >  SRR4302535.1824718/1‑94 (MQ=60)
                                                                     ATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATT                           <  SRR4302535.2604906/94‑1 (MQ=60)
                                                                     ATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATT                           <  SRR4302535.1149588/94‑1 (MQ=60)
                                                                     ATTACTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATT                           <  SRR4302535.370997/94‑1 (MQ=60)
                                                                     ATTACTGCCGAAGCAATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATT                           <  SRR4302535.1022186/94‑1 (MQ=60)
                                                                         CTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCG                       <  SRR4302535.856506/94‑1 (MQ=60)
                                                                         CTGCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCG                       <  SRR4302535.642905/94‑1 (MQ=60)
                                                                           GCCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGA                     >  SRR4302535.4482672/1‑94 (MQ=60)
                                                                            CCGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAG                    <  SRR4302535.4009760/94‑1 (MQ=60)
                                                                             CGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGG                   >  SRR4302535.1939274/1‑94 (MQ=60)
                                                                             CGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGG                   <  SRR4302535.747499/94‑1 (MQ=60)
                                                                             CGAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGG                   >  SRR4302535.4032039/1‑94 (MQ=60)
                                                                              GAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGG                  <  SRR4302535.596566/94‑1 (MQ=60)
                                                                              GAAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGG                  >  SRR4302535.4048790/1‑94 (MQ=60)
                                                                               AAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGT                 <  SRR4302535.459329/94‑1 (MQ=60)
                                                                               AAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGT                 >  SRR4302535.3996729/1‑94 (MQ=60)
                                                                               AAGCCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGG                 >  SRR4302535.1254704/1‑94 (MQ=60)
                                                                                  CCATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAG              <  SRR4302535.2644117/94‑1 (MQ=60)
                                                                                    ATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTG            <  SRR4302535.2070614/94‑1 (MQ=60)
                                                                                    ATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTG            <  SRR4302535.2652778/94‑1 (MQ=60)
                                                                                    ATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTG            <  SRR4302535.3373036/94‑1 (MQ=60)
                                                                                    ATGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTG            <  SRR4302535.4253540/94‑1 (MQ=60)
                                                                                     TGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTGC           <  SRR4302535.1346035/94‑1 (MQ=60)
                                                                                     TGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTGC           <  SRR4302535.4597509/94‑1 (MQ=60)
                                                                                     TGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTGC           >  SRR4302535.1791159/1‑94 (MQ=60)
                                                                                     TGACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTGC           <  SRR4302535.3431627/94‑1 (MQ=60)
                                                                                      GACGGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTGCG          >  SRR4302535.3940297/1‑94 (MQ=60)
                                                                                        cgGGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTGCGCG        <  SRR4302535.4552967/92‑1 (MQ=60)
                                                                                        G‑GGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTGCGCGA       <  SRR4302535.2233760/94‑1 (MQ=60)
                                                                                        G‑GGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTGCGCGA       >  SRR4302535.2165641/1‑94 (MQ=60)
                                                                                          GGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTGCGCGAT      <  SRR4302535.3835879/94‑1 (MQ=60)
                                                                                            GGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTGCGCGATAT    <  SRR4302535.1615807/94‑1 (MQ=60)
                                                                                             GGCGCTGGCGGCCGGACGAGGTCGCATTGATACATTTGGCGTAATTATTATTGCGCCCGCCGCCGCAATTGGCGGAGGGTCAGTGCGCGATATT   <  SRR4302535.3130892/94‑1 (MQ=60)
                                                                                              GCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTGCGCGATATTC  <  SRR4302535.452423/94‑1 (MQ=60)
                                                                                              |                                                                                             
AATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCCGAAGCCATGAC‑GGGGGCGCTGGCGGCCGGACGACGGCGCATGGATACATTTGGCGTAATTATTATTGCGACCGCCACCGCAATTGGCGGAGGGTCAGTGCGCGATATTC  >  NC_000913/3816462‑3816648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑