Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,843,432 |
(T)7→8 |
coding (1363/1392 nt) |
uhpT ← |
hexose phosphate transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,843,425 | 1 | . | T | 99.4%
| 644.2
/ ‑3.6
| 177 | coding (1370/1392 nt) | uhpT | hexose phosphate transport protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base T (104/72); total (104/73) |
| Fisher's exact test for biased strand distribution p-value = 4.12e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.23e-01 |
Only 100 of 206 total aligned reads displayed.
ACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑TTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCG > NC_000913/3843334‑3843512
|
tACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑ttt > 1:532960/1‑93 (MQ=255)
cGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑ttttt < 2:2378251/93‑1 (MQ=255)
cTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑ttttttt < 2:3142723/93‑1 (MQ=255)
cTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑ttttttt < 2:4384759/93‑1 (MQ=255)
cTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑ttttttt > 2:4473342/1‑93 (MQ=255)
ggAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑ttttttttc > 2:3688067/1‑91 (MQ=255)
ggAAGTCACGAAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑ttttttttc < 2:4017111/93‑3 (MQ=255)
gAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCGGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑ttttttttct < 2:1457756/93‑4 (MQ=255)
aaGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑ttttttttctc < 1:675817/93‑5 (MQ=255)
cACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCgcgg > 2:4188497/1‑93 (MQ=255)
aCGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCgcggc > 2:1112300/1‑93 (MQ=255)
aCGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCgcggc > 2:590349/1‑93 (MQ=255)
cGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCgcggcg > 1:3350894/1‑93 (MQ=255)
ggAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGcggcgg > 1:1004245/1‑93 (MQ=255)
gAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGcggcggg > 2:2485846/1‑92 (MQ=255)
taataaAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGAttt < 1:4054534/93‑1 (MQ=255)
aataaAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGAtttt < 2:2800656/93‑1 (MQ=255)
aataaAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGAtttt < 1:4263618/93‑1 (MQ=255)
aataaAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGAtttt < 1:2152108/93‑1 (MQ=255)
taaAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGc > 1:4527085/1‑93 (MQ=255)
aaaaGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGttc > 2:2667745/1‑93 (MQ=255)
aaaaGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGttc < 1:895297/93‑1 (MQ=255)
aaaGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGttct > 1:2031184/1‑93 (MQ=255)
aaGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGttctt < 2:2975475/93‑1 (MQ=255)
gCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTcc < 2:2091820/93‑1 (MQ=255)
gCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTcc < 1:3030088/93‑1 (MQ=255)
cGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCAtt < 1:4184893/93‑1 (MQ=255)
gCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTAc > 2:3927451/1‑93 (MQ=255)
gCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTAc > 1:2771190/1‑93 (MQ=255)
gCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTAc > 1:3078654/1‑93 (MQ=255)
gCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTAc < 1:4359723/93‑1 (MQ=255)
gCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTAc > 2:1309973/1‑93 (MQ=255)
gCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTAc > 2:4402747/1‑93 (MQ=255)
tCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGc > 2:3534665/1‑93 (MQ=255)
tCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGc > 1:1572349/1‑93 (MQ=255)
cATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGcc < 1:3277017/93‑1 (MQ=255)
cATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGcc < 1:1098254/93‑1 (MQ=255)
aTGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCa > 2:912891/1‑93 (MQ=255)
tGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCTTTCTTCCATTACCGCCAc < 1:2599610/93‑1 (MQ=255)
tGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCAc > 1:2381356/1‑93 (MQ=255)
tGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCAc > 1:4167507/1‑93 (MQ=255)
gCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACt > 2:2687068/1‑93 (MQ=255)
cGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTAt < 2:4458597/93‑1 (MQ=255)
gggCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATc > 1:4291782/1‑93 (MQ=255)
ggCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCg > 1:122957/1‑93 (MQ=255)
cAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGcc > 2:474851/1‑93 (MQ=255)
aaaaGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCa < 2:4657431/93‑1 (MQ=255)
aaaaGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCa < 2:3596601/93‑1 (MQ=255)
aaaGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTTGCGGCGGATTTTGCGTTCCTCCATTACCGCCACTATCGCCAt > 1:965220/1‑93 (MQ=255)
aaaGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCAt > 1:1920998/1‑93 (MQ=255)
aaaGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCAt < 1:1360696/93‑1 (MQ=255)
aaGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATc > 1:592496/1‑93 (MQ=255)
aaGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATc < 2:2505346/93‑1 (MQ=255)
aaGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATc < 2:4330016/93‑1 (MQ=255)
aaGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATAGCCATc > 1:1728208/1‑93 (MQ=255)
gTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAg < 2:113333/93‑1 (MQ=255)
gTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAg > 1:2868488/1‑93 (MQ=255)
cacaAGTTACGTTTATGCCACTGTCAACTGCGGAATTTTTTTTCTCGCGGCGGTTTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGc < 2:3383475/93‑1 (MQ=255)
cACCAGTTCCGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGc < 2:218324/93‑1 (MQ=255)
cACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGc > 2:2581811/1‑93 (MQ=255)
aCCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCa > 2:1535725/1‑93 (MQ=255)
ccAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAg > 2:4296478/1‑93 (MQ=255)
ccAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAg > 2:4424796/1‑93 (MQ=255)
cAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGa < 2:1698173/93‑1 (MQ=255)
aGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGAt > 1:1701945/1‑93 (MQ=255)
aGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGAt > 2:4122790/1‑93 (MQ=255)
aGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGAt > 1:3121627/1‑93 (MQ=255)
ttACGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATAc > 1:3616590/1‑93 (MQ=255)
aCGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACaa < 1:2685179/93‑1 (MQ=255)
aCGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACaa < 1:1465052/93‑1 (MQ=255)
aCGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTACCGCCATCCGCCAGATACaa > 1:1896222/1‑93 (MQ=255)
cttttATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTCCCGCCACTATCGCCATCAGGCAGATACAAc < 1:3657818/91‑1 (MQ=255)
cGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAAc > 2:3265349/1‑93 (MQ=255)
cGTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAAc < 2:781432/93‑1 (MQ=255)
gTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAAcc > 2:2941268/1‑93 (MQ=255)
gTTTATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAAcc > 1:4468634/1‑93 (MQ=255)
tttATGCCACTGTCAACTGCTGAATTTTTTTTTTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCCGGCAGATACAACCa > 2:3464128/1‑93 (MQ=255)
tttATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCa > 2:2325830/1‑93 (MQ=255)
ttATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCaa < 2:3753762/93‑1 (MQ=255)
ttATCCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGTATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCaa < 2:4079391/93‑1 (MQ=255)
tATGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAAt < 1:1564664/93‑1 (MQ=255)
aTGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATc < 1:779425/93‑1 (MQ=255)
aTGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATc < 2:1011505/93‑1 (MQ=255)
tGCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATcg > 1:4597026/1‑93 (MQ=255)
gCCACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATcgc < 2:138307/93‑1 (MQ=255)
ccACTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATcgcg > 1:2042247/1‑93 (MQ=255)
aCTGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCgcggc > 2:1890637/1‑93 (MQ=255)
tgacAACTGCTGAATTTTTTTTCTCGCGACGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGa > 2:733252/4‑93 (MQ=255)
tGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGa > 2:3446692/1‑93 (MQ=255)
tGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGa < 1:2495880/93‑1 (MQ=255)
tGTCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGa > 1:2897230/1‑93 (MQ=255)
tCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGata > 1:2210894/1‑93 (MQ=255)
tCAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGata < 2:1344539/93‑1 (MQ=255)
cAACTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGatat < 2:1995723/93‑1 (MQ=255)
aCTGCTGAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATcc > 2:178265/1‑93 (MQ=255)
ctgctgAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTCCCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCa < 2:304177/93‑1 (MQ=255)
ctgctgAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCa > 1:21313/1‑93 (MQ=255)
tgctgAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAg > 1:864559/1‑93 (MQ=255)
ctgAATTTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAgcg > 2:1219960/1‑93 (MQ=255)
ctgAATTTTTTTTCTCGCGGCGGATTTGGCGTTCTTCCATGACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAgcg < 1:1057741/93‑1 (MQ=255)
|
ACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑TTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCG > NC_000913/3843334‑3843512
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑TTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGC > NC_000913/3843340‑3843524
|
CTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑TTTTTTT‑T > SRR4302535.1004148/1‑94 (MQ=60)
GGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑TTTTTTTtct < SRR4302535.142995/94‑4 (MQ=60)
AAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCG > SRR4302535.1684964/1‑94 (MQ=60)
AAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCG < SRR4302535.680540/94‑1 (MQ=60)
AAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCG < SRR4302535.2051259/94‑1 (MQ=60)
AAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCG < SRR4302535.2624716/94‑1 (MQ=60)
AGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGC < SRR4302535.908895/94‑1 (MQ=60)
AGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGC > SRR4302535.3096237/1‑94 (MQ=60)
AGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGC < SRR4302535.2536265/94‑1 (MQ=60)
AGTCACGCAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGC < SRR4302535.2582233/94‑1 (MQ=60)
ACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCG > SRR4302535.3374237/1‑94 (MQ=60)
CGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGG > SRR4302535.1011375/1‑94 (MQ=60)
GAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGAT < SRR4302535.12340/94‑1 (MQ=60)
ATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTT > SRR4302535.4237168/1‑94 (MQ=60)
ATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTT < SRR4302535.1281073/94‑1 (MQ=60)
TAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTT < SRR4302535.4082296/94‑1 (MQ=60)
TAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTT < SRR4302535.1740030/94‑1 (MQ=60)
TAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTT < SRR4302535.3129259/94‑1 (MQ=60)
AATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTG < SRR4302535.4292815/94‑1 (MQ=60)
AATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTG < SRR4302535.2167578/94‑1 (MQ=60)
AATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTG > SRR4302535.916492/1‑94 (MQ=60)
ATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGC > SRR4302535.4558092/1‑94 (MQ=60)
AAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTT < SRR4302535.1925760/94‑1 (MQ=60)
AAAAAGCCCGGCGTCATTCGGGGCGAAAATCACCAGTTATGTTGATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTC < SRR4302535.400032/94‑1 (MQ=60)
AAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑TTTTTTT‑CTCGCGGCGGATTTTGCGTTCT < SRR4302535.2454767/94‑1 (MQ=60)
AAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCT > SRR4302535.2045822/1‑94 (MQ=60)
AAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCT < SRR4302535.901647/94‑1 (MQ=60)
AAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTT > SRR4302535.1592533/1‑94 (MQ=60)
AAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTT < SRR4302535.4191371/94‑1 (MQ=60)
GCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCA < SRR4302535.3051301/94‑1 (MQ=60)
GCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCA < SRR4302535.2894838/94‑1 (MQ=60)
CCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCAT < SRR4302535.2764902/94‑1 (MQ=60)
CCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCAT > SRR4302535.53952/1‑94 (MQ=60)
CCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCAT < SRR4302535.1091388/94‑1 (MQ=60)
CCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCAT > SRR4302535.2331145/1‑94 (MQ=60)
CGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTA < SRR4302535.4213523/94‑1 (MQ=60)
CGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTA > SRR4302535.4302244/1‑94 (MQ=60)
GGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTAC > SRR4302535.3100125/1‑94 (MQ=60)
GGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTAC > SRR4302535.2790925/1‑94 (MQ=60)
GGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTAC < SRR4302535.2180690/94‑1 (MQ=60)
GCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACC < SRR4302535.4389564/94‑1 (MQ=60)
CGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCG > SRR4302535.4505253/1‑94 (MQ=60)
GTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGC > SRR4302535.1583698/1‑94 (MQ=60)
GTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGC > SRR4302535.1053873/1‑94 (MQ=60)
CATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCA < SRR4302535.3299781/94‑1 (MQ=60)
CATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCA < SRR4302535.1106072/94‑1 (MQ=60)
ATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCAC > SRR4302535.2398456/1‑94 (MQ=60)
ATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCAC > SRR4302535.4196042/1‑94 (MQ=60)
ATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGGTCTTCCATTACCGCCCC > SRR4302535.882315/1‑94 (MQ=60)
TGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCTTTCTTCCATTACCGCCACT < SRR4302535.2618272/94‑1 (MQ=60)
CGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATC < SRR4302535.4624843/94‑1 (MQ=60)
CGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATC > SRR4302535.4321154/1‑94 (MQ=60)
GGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCG > SRR4302535.123821/1‑94 (MQ=60)
GCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCC > SRR4302535.3014574/1‑94 (MQ=60)
AAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTTGCGGCGGATTTTGCGTTCCTCCATTACCGCCACTATCGCCAT > SRR4302535.972080/1‑94 (MQ=60)
AAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCAT > SRR4302535.2166025/1‑94 (MQ=60)
AAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCAT > SRR4302535.1934844/1‑94 (MQ=60)
AAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATC > SRR4302535.596648/1‑94 (MQ=60)
AAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATC < SRR4302535.1370427/94‑1 (MQ=60)
AAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATAGCCATC > SRR4302535.1740699/1‑94 (MQ=60)
AGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAG > SRR4302535.2888805/1‑94 (MQ=60)
GTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGG < SRR4302535.1581005/94‑1 (MQ=60)
GTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGG > SRR4302535.341283/1‑94 (MQ=60)
GTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGG < SRR4302535.3372167/94‑1 (MQ=60)
TCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCCTCAGGC > SRR4302535.666438/1‑94 (MQ=60)
CAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGAT > SRR4302535.1714249/1‑94 (MQ=60)
CAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGAT > SRR4302535.3722930/1‑94 (MQ=60)
CAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGAT > SRR4302535.3143365/1‑94 (MQ=60)
GTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATAC > SRR4302535.3641663/1‑94 (MQ=60)
TTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACA < SRR4302535.4396877/94‑1 (MQ=60)
TACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTACCGCCATCCGCCAGATACAA > SRR4302535.1909864/1‑94 (MQ=60)
ACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAAC < SRR4302535.1475548/94‑1 (MQ=60)
ACGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAAC < SRR4302535.2704378/94‑1 (MQ=60)
CTTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTCCCGCCACTATCGCCATCAGGCAGATACAACC < SRR4302535.3683137/94‑1 (MQ=60)
CGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACC > SRR4302535.4499296/1‑94 (MQ=60)
CGTTTATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACC > SRR4302535.2091466/1‑94 (MQ=60)
TATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATC > SRR4302535.43305/1‑94 (MQ=60)
TATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATC < SRR4302535.1575962/94‑1 (MQ=60)
ATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCG > SRR4302535.4628300/1‑94 (MQ=60)
ATGCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCG < SRR4302535.784898/94‑1 (MQ=60)
GCCACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCG > SRR4302535.2056959/1‑94 (MQ=60)
CACTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGC < SRR4302535.793845/94‑1 (MQ=60)
CTGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGA > SRR4302535.2917718/1‑94 (MQ=60)
TGTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGAT < SRR4302535.2513887/94‑1 (MQ=60)
GTCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATA > SRR4302535.2226643/1‑94 (MQ=60)
GTCAACTGCTGAA‑TTTTTTTGCTCGCGGCGGATTTTGCGTTCTTCCATTGCCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATA < SRR4302535.2394914/94‑1 (MQ=60)
TCAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATAT < SRR4302535.4291567/94‑1 (MQ=60)
CAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATC > SRR4302535.2585734/1‑94 (MQ=60)
CAACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATC < SRR4302535.2011449/94‑1 (MQ=60)
AACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACCACCAATCGCGGCGATATCC > SRR4302535.3206193/1‑94 (MQ=60)
AACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCC < SRR4302535.1485157/94‑1 (MQ=60)
ACTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCA > SRR4302535.21470/1‑94 (MQ=60)
CTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAG > SRR4302535.180993/1‑94 (MQ=60)
CTGCTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAG > SRR4302535.870669/1‑94 (MQ=60)
CTGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGC > SRR4302535.3529533/1‑94 (MQ=60)
CTGAATTTTTTTT‑CTCGCGGCGGATTTGGCGTTCTTCCATGACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGC < SRR4302535.1065263/94‑1 (MQ=60)
TGAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCG < SRR4302535.3281641/94‑1 (MQ=60)
GAATTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCTTCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGG < SRR4302535.223811/94‑1 (MQ=60)
aatTTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGC > SRR4302535.1845348/4‑94 (MQ=60)
AT‑TTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCG > SRR4302535.2533285/1‑94 (MQ=60)
AT‑TTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCA > SRR4302535.1624352/1‑94 (MQ=60)
AT‑TTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACGATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCG < SRR4302535.2824047/94‑1 (MQ=60)
T‑TTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGA < SRR4302535.2001439/94‑1 (MQ=60)
TTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAA < SRR4302535.3858405/94‑1 (MQ=60)
TTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAA > SRR4302535.596382/1‑94 (MQ=60)
TTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAG < SRR4302535.1590511/94‑1 (MQ=60)
TTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGG < SRR4302535.133624/94‑1 (MQ=60)
TTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTG < SRR4302535.3766625/94‑1 (MQ=60)
TT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGC > SRR4302535.4134480/1‑94 (MQ=60)
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CTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAA‑TTTTTTT‑CTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGC > NC_000913/3843340‑3843524
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
