Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,874,579	A→G	M1T (ATG→ACG) †	yidA ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,874,579	0	A	G	100.0%	746.8 / NA	231	M1T (ATG→ACG) †	yidA	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (116/115); total (116/115)

Only 100 of 244 total aligned reads displayed.

GCGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGAAAAGGGGGATG  >  NC_000913/3874489‑3874666

 cGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGa                                                                                       <  2:2260386/93‑1 (MQ=255)

    cAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGtt                                                                                    <  2:3285765/93‑1 (MQ=255)

     aaTCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTc                                                                                   <  1:3306250/93‑1 (MQ=255)

     aaTCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTc                                                                                   <  2:1607272/93‑1 (MQ=255)

     aaTCGCATTTTTAACGGCGGGTGAAATGGGGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTc                                                                                   <  2:3686789/93‑1 (MQ=255)

        cGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTcccc                                                                                <  2:1705539/93‑1 (MQ=255)

          cATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAg                                                                              <  1:1308687/93‑1 (MQ=255)

           aTTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAgg                                                                             <  1:4062863/93‑1 (MQ=255)

            tttttAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGt                                                                            <  2:2401429/93‑1 (MQ=255)

                tAACGGCGGGTGGAAAGGGGGGGTCCGGCGGGGGAAAGGGGCCATCCATATCGATAGCAATAAGTTTAATAACCGTGAGTTCCCCAGGGAGAt                                                                        >  2:4678175/1‑93 (MQ=255)

                tAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGAt                                                                        <  1:4234233/93‑1 (MQ=255)

                 aaCGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGAtt                                                                       <  1:1530992/93‑1 (MQ=255)

                  aCGGCGGGGGGAATGGGGGGATCGGGCAGCAGAAGGGGGCCATCCATATCGATAGCAATGAGGTTTATAGCCGTGAGGTCCCCCGGTAGAATg                                                                      >  2:902578/1‑93 (MQ=255)

                   cggcggGTGAAATGGTGTGATCGGGCAGGAGGAGGGTGACATCCATATTCATAGCAACGAGGTTAATAGGCGTGACGTTCCCATGCAGATTgg                                                                     >  2:872081/1‑93 (MQ=255)

                     gcggGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGtt                                                                   <  2:3507663/93‑1 (MQ=255)

                     gcggGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGtt                                                                   <  1:1127059/93‑1 (MQ=255)

                     gcggGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGtt                                                                   <  1:1583153/93‑1 (MQ=255)

                       gggTGAAAGGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTcc                                                                 <  2:4324556/93‑1 (MQ=255)

                          tGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGa                                                              <  2:2842263/93‑1 (MQ=255)

                          tGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGa                                                              <  1:1135225/93‑1 (MQ=255)

                            aaaTGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGAcc                                                            >  2:3387504/1‑93 (MQ=255)

                             aaTGGTGTGATCGGGCAGCAGAAGGGGGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGAccc                                                           >  2:2513762/1‑93 (MQ=255)

                              aTGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCa                                                          >  1:4581899/1‑93 (MQ=255)

                                ggTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATg                                                        >  1:443387/1‑93 (MQ=255)

                                 gtgtGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGc                                                       >  1:694334/1‑93 (MQ=255)

                                    tgATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTaa                                                    <  1:1661379/93‑1 (MQ=255)

                                    tgATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTaa                                                    <  1:568865/93‑1 (MQ=255)

                                     gATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAc                                                   >  1:3886606/1‑93 (MQ=255)

                                     gATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAc                                                   >  2:4299713/1‑93 (MQ=255)

                                       tCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAcgc                                                 >  2:3789215/1‑93 (MQ=255)

                                         gggCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGa                                               <  2:236565/93‑1 (MQ=255)

                                          ggCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGAt                                              <  2:3278161/93‑1 (MQ=255)

                                           gcagcaGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGAtt                                             <  2:2310441/93‑1 (MQ=255)

                                           gcagcaGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGAtt                                             >  1:4119768/1‑93 (MQ=255)

                                              gcagAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCg                                          >  1:4463244/1‑93 (MQ=255)

                                               cagAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGc                                         <  2:3563992/93‑1 (MQ=255)

                                                 gAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTc                                       >  2:3095446/1‑93 (MQ=255)

                                                 gAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTc                                       >  2:1477340/1‑93 (MQ=255)

                                                    gggTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCaaa                                    >  1:2003116/1‑93 (MQ=255)

                                                      gTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCaaaaa                                  <  2:1223347/93‑1 (MQ=255)

                                                        gCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATc                                <  2:2029826/93‑1 (MQ=255)

                                                        gCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATc                                <  2:1291749/93‑1 (MQ=255)

                                                        gCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATc                                >  1:2643038/1‑93 (MQ=255)

                                                        gCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATc                                >  1:811465/1‑93 (MQ=255)

                                                         ccatccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCa                               <  2:2784086/93‑1 (MQ=255)

                                                         ccatccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCa                               <  2:1382444/93‑1 (MQ=255)

                                                         ccatccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCa                               >  1:3245537/1‑93 (MQ=255)

                                                           atccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGt                             >  1:259603/1‑93 (MQ=255)

                                                           atccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGt                             <  2:525783/93‑1 (MQ=255)

                                                           atccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGt                             >  2:579636/1‑93 (MQ=255)

                                                           atccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGt                             <  1:2135783/93‑1 (MQ=255)

                                                            tccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTa                            >  1:3839953/1‑93 (MQ=255)

                                                             ccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTac                           >  2:4367890/1‑93 (MQ=255)

                                                             ccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTac                           <  2:2178276/93‑1 (MQ=255)

                                                              catATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTaca                          >  1:4566277/1‑93 (MQ=255)

                                                               atatCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTacaa                         >  2:783981/1‑93 (MQ=255)

                                                                tatCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTacaac                        >  1:2773940/1‑93 (MQ=255)

                                                                tatCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTacaac                        <  2:2963433/93‑1 (MQ=255)

                                                                tatCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTacaac                        >  1:2978773/1‑93 (MQ=255)

                                                                 atCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTacaaca                       >  1:1712320/1‑93 (MQ=255)

                                                                  tCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAacac                      >  2:141963/1‑93 (MQ=255)

                                                                   cGATAGCAATGAGTTTAATCGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCCCAAAAATCAGTACAACAcc                     <  2:4105819/93‑1 (MQ=255)

                                                                   cGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACAcc                     >  2:1019124/1‑93 (MQ=255)

                                                                    gATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACAccc                    >  1:1461128/1‑93 (MQ=255)

                                                                    gATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACAccc                    >  1:1899459/1‑93 (MQ=255)

                                                                     aTAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCg                   >  2:4168070/1‑93 (MQ=255)

                                                                      tAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑a                 >  1:3186624/1‑93 (MQ=255)

                                                                      tAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑a                 <  2:3736166/93‑1 (MQ=255)

                                                                      tAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑a                 <  2:3167937/93‑1 (MQ=255)

                                                                      tAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑a                 >  1:1005978/1‑93 (MQ=255)

                                                                      tAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑a                 >  1:4675722/1‑93 (MQ=255)

                                                                       aGCAATGAGTTTGATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑Ag                <  1:3773136/93‑1 (MQ=255)

                                                                       aGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑Ag                <  1:3719303/93‑1 (MQ=255)

                                                                        gCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAACCAGTACAACACCCG‑Agg               >  1:1383203/1‑93 (MQ=255)

                                                                         cAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑Aggg              <  1:3192802/93‑1 (MQ=255)

                                                                          aaTGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGa             >  2:1083308/1‑93 (MQ=255)

                                                                          aaTGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGa             >  2:1632022/1‑93 (MQ=255)

                                                                          aaTGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGa             >  1:2737663/1‑93 (MQ=255)

                                                                          aaTGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGa             >  1:2915603/1‑93 (MQ=255)

                                                                          aaTGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGa             >  1:3341911/1‑93 (MQ=255)

                                                                          aaTGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTACGCTCAAAAATCAGTACAACACCCG‑AGGGa             >  2:2894375/1‑93 (MQ=255)

                                                                           aTGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGaa            >  2:2532588/1‑93 (MQ=255)

                                                                             gAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAGCGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGaaaa          <  1:2561136/93‑1 (MQ=255)

                                                                             gAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGaaaa          >  1:1043723/1‑93 (MQ=255)

                                                                             gAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGaaaa          <  2:1901268/93‑1 (MQ=255)

                                                                              aGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGAAAAg         >  2:3402388/1‑93 (MQ=255)

                                                                               gTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGAAAAgg        >  2:2745651/1‑93 (MQ=255)

                                                                               gTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGAAAAgg        >  2:4484714/1‑93 (MQ=255)

                                                                               gTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGAAAAgg        >  1:4175933/1‑93 (MQ=255)

                                                                                tttAATAGCCGTGAGTTCCCCTGGTAGATTGGTTACTGACCCATGCTAACGCGATTCCGCTCATAAATTCGTCGAACACCCG‑CGGGGAAAggg       >  2:3961012/1‑93 (MQ=255)

                                                                                tttAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGAAAAggg       <  1:2422675/93‑1 (MQ=255)

                                                                                tttAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGAAAAggg       >  2:745565/1‑93 (MQ=255)

                                                                                tttAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGAAAAggg       >  1:980251/1‑93 (MQ=255)

                                                                                  tAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGAAAAggggg     <  2:679744/93‑1 (MQ=255)

                                                                                  tAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGAAAAggggg     <  1:1076743/93‑1 (MQ=255)

                                                                                   aaTAGCCGTGAGTTCCCCAGGTAGATTGGTTTCTGACCCATGCTAACGCGATTCCGCTCCAAAATAAATAAAACAACCGCGGGGAAAAggggg     >  2:3355253/1‑93 (MQ=255)

                                                                                   aaTAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGAAAAgggggg    <  1:39824/93‑2 (MQ=255)

                                                                                    aTAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGAAAAgggggga   >  2:2125816/1‑91 (MQ=255)

                                                                                    aTAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGAAAAgggggga   >  2:823653/1‑91 (MQ=255)

                                                                                     tAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGAAAAggggggct  >  2:3909508/1‑90 (MQ=255)

GCGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG‑AGGGAAAAGGGGGATG  >  NC_000913/3874489‑3874666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCTGCGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑GGGGGATGCAACG  >  NC_000913/3874486‑3874671

GCTGCGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCG                                                                                                <  SRR4302535.1772727/94‑1 (MQ=60)

 CTGCGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGT                                                                                               <  SRR4302535.3428247/94‑1 (MQ=60)

 CTGCGACAATCGCATTTTTAACGGCGGGTGAAATGGTCTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGT                                                                                               <  SRR4302535.719958/94‑1 (MQ=60)

    CGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑G                                                                                           <  SRR4302535.1636908/94‑1 (MQ=60)

    CGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑G                                                                                           <  SRR4302535.1811470/94‑1 (MQ=60)

    CGGCAATCGCATTTTTAACGGCGGGTGAAATGGGGTGGTCGGGCCGCAGAAGGGGGCCACCCATATCGATAGCAATGAGGTTAATAGCCGTGA‑G                                                                                           >  SRR4302535.2988598/1‑94 (MQ=60)

     GGCAATCGCATTTTTAACGGCGGGGGGAATGGGGTGGTCGGGCAGCAGAAGGGGGCCATCCCTATCGATAGCAATGAGTTTTATAGCCGTGA‑GT                                                                                          >  SRR4302535.4692606/1‑94 (MQ=60)

       CAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTC                                                                                        <  SRR4302535.1204305/94‑1 (MQ=60)

        AATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCC                                                                                       <  SRR4302535.3329257/94‑1 (MQ=60)

        AATCGCATTTTTAACGGCGGGTGAAATGGGGTGGTCGGGGCGCAGAAGGGGGGCCTCCCTATCGATAGCAATGAGTTTAATAACCGTGA‑GTTCC                                                                                       >  SRR4302535.804044/1‑94 (MQ=42)

        AATCGCATTTTTAACGGCGGGGGGAATGGGGTGATCGGGGAGCAGAAGGGGGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGGTTC                                                                                        >  SRR4302535.4613619/1‑94 (MQ=60)

        AATCGCATTTTTAACGGCGGGGGAAATGGGGGGGTCGGGGAGCCGAAGGGGGCCATCCCTATCGATAGCAATGAGTTTAATAGCCGTGA‑GGTCC                                                                                       >  SRR4302535.2992370/1‑94 (MQ=44)

            GCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAG                                                                                   <  SRR4302535.2460015/94‑1 (MQ=60)

            GCATTTTTAACGGCGGGGGAAATGGGGTGGTCGGGGAGGAGAAGGGGGGCATCCATATCGATAGCAATGAGTTTTATAGCCCGGA‑GTTCCCCCG                                                                                   >  SRR4302535.2753602/1‑94 (MQ=38)

             CATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGG                                                                                  <  SRR4302535.1318038/94‑1 (MQ=60)

             CATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGG                                                                                  <  SRR4302535.2514772/94‑1 (MQ=60)

              ATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGT                                                                                 <  SRR4302535.4090668/94‑1 (MQ=60)

                 TTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATATCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGA                                                                              <  SRR4302535.1703481/94‑1 (MQ=60)

                   TAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATT                                                                            <  SRR4302535.4652440/94‑1 (MQ=60)

                   TAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATT                                                                            <  SRR4302535.4263210/94‑1 (MQ=60)

                    AACGGCTGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTG                                                                           <  SRR4302535.4161719/94‑1 (MQ=60)

                    AACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTG                                                                           <  SRR4302535.1542022/94‑1 (MQ=60)

                        GCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTC                                                                       <  SRR4302535.1594580/94‑1 (MQ=60)

                        GCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTC                                                                       <  SRR4302535.1135108/94‑1 (MQ=60)

                         CGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCC                                                                      >  SRR4302535.4054063/1‑94 (MQ=60)

                             TGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGAC                                                                  >  SRR4302535.4478299/1‑94 (MQ=60)

                             TGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGAC                                                                  <  SRR4302535.1143323/94‑1 (MQ=60)

                             TGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGAC                                                                  >  SRR4302535.782926/1‑94 (MQ=60)

                                AATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCA                                                               >  SRR4302535.4613102/1‑94 (MQ=60)

                                 ATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCAT                                                              <  SRR4302535.616929/94‑1 (MQ=60)

                                 ATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCAT                                                              >  SRR4302535.1028085/1‑94 (MQ=60)

                                  TGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATG                                                             >  SRR4302535.446491/1‑94 (MQ=60)

                                   GGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGC                                                            >  SRR4302535.4605809/1‑94 (MQ=60)

                                   GGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGC                                                            >  SRR4302535.699205/1‑94 (MQ=60)

                                    GTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCT                                                           >  SRR4302535.1248560/1‑94 (MQ=60)

                                    GTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCT                                                           <  SRR4302535.2661578/94‑1 (MQ=60)

                                      GTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAA                                                         <  SRR4302535.762536/94‑1 (MQ=60)

                                       TGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAC                                                        >  SRR4302535.3913266/1‑94 (MQ=60)

                                       TGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAC                                                        <  SRR4302535.1673384/94‑1 (MQ=60)

                                       TGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAC                                                        <  SRR4302535.572860/94‑1 (MQ=60)

                                       TGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAC                                                        <  SRR4302535.3603567/94‑1 (MQ=60)

                                        GATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACG                                                       <  SRR4302535.3147834/94‑1 (MQ=60)

                                          TCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCG                                                     <  SRR4302535.43020/94‑1 (MQ=60)

                                             GGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATT                                                  <  SRR4302535.29602/94‑1 (MQ=60)

                                             GGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATT                                                  >  SRR4302535.4147962/1‑94 (MQ=60)

                                             GGCAGCAGAAGGGTCCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATT                                                  <  SRR4302535.3374632/94‑1 (MQ=60)

                                               CAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCC                                                <  SRR4302535.383379/94‑1 (MQ=60)

                                               CAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCC                                                >  SRR4302535.2664214/1‑94 (MQ=60)

                                                AGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCG                                               >  SRR4302535.4493858/1‑94 (MQ=60)

                                                AGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCG                                               <  SRR4302535.3975545/94‑1 (MQ=60)

                                                   AGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTC                                            >  SRR4302535.1373583/1‑94 (MQ=60)

                                                   AGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTC                                            >  SRR4302535.2187845/1‑94 (MQ=60)

                                                     AAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAA                                          <  SRR4302535.1001484/94‑1 (MQ=60)

                                                     AAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAA                                          >  SRR4302535.4246305/1‑94 (MQ=60)

                                                     AAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAA                                          >  SRR4302535.2068960/1‑94 (MQ=60)

                                                     AAGGGTCCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAA                                          <  SRR4302535.3247660/94‑1 (MQ=60)

                                                      AGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAA                                         <  SRR4302535.1557521/94‑1 (MQ=60)

                                                      AGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAA                                         >  SRR4302535.2017549/1‑94 (MQ=60)

                                                          TGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATC                                     >  SRR4302535.2661969/1‑94 (MQ=60)

                                                          TGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATC                                     >  SRR4302535.817139/1‑94 (MQ=60)

                                                          TGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATC                                     >  SRR4302535.1397060/1‑94 (MQ=60)

                                                           GCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCA                                    >  SRR4302535.3268074/1‑94 (MQ=60)

                                                            CCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAG                                   <  SRR4302535.3266458/94‑1 (MQ=60)

                                                            CCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAG                                   <  SRR4302535.4654050/94‑1 (MQ=60)

                                                            CCATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAG                                   >  SRR4302535.4166439/1‑94 (MQ=60)

                                                             CATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGT                                  >  SRR4302535.261401/1‑94 (MQ=60)

                                                             CATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGT                                  <  SRR4302535.3765417/94‑1 (MQ=60)

                                                              ATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTA                                 >  SRR4302535.4392404/1‑94 (MQ=60)

                                                              ATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTA                                 >  SRR4302535.3866416/1‑94 (MQ=60)

                                                              ATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTA                                 <  SRR4302535.1801909/94‑1 (MQ=60)

                                                              ATCCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTA                                 <  SRR4302535.2151171/94‑1 (MQ=60)

                                                                CCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACA                               <  SRR4302535.30909/94‑1 (MQ=60)

                                                                CCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACA                               >  SRR4302535.4597427/1‑94 (MQ=60)

                                                                CCATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACA                               <  SRR4302535.214820/94‑1 (MQ=60)

                                                                  ATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAAC                             >  SRR4302535.2793692/1‑94 (MQ=60)

                                                                  ATATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAAC                             >  SRR4302535.2999673/1‑94 (MQ=60)

                                                                   TATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACA                            >  SRR4302535.1724700/1‑94 (MQ=60)

                                                                    ATCGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACAC                           >  SRR4302535.1510569/1‑94 (MQ=60)

                                                                      CGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCC                         >  SRR4302535.1471594/1‑94 (MQ=60)

                                                                      CGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCC                         >  SRR4302535.2611124/1‑94 (MQ=60)

                                                                      CGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCC                         >  SRR4302535.1098247/1‑94 (MQ=60)

                                                                      CGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCC                         >  SRR4302535.1913129/1‑94 (MQ=60)

                                                                      CGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCC                         >  SRR4302535.857631/1‑94 (MQ=60)

                                                                      CGATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCC                         >  SRR4302535.2662688/1‑94 (MQ=60)

                                                                      CGATAACAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTGCAACACCC                         <  SRR4302535.3210015/94‑1 (MQ=60)

                                                                       GATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG                        >  SRR4302535.3853995/1‑94 (MQ=60)

                                                                        ATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGA                       >  SRR4302535.4707284/1‑94 (MQ=60)

                                                                        ATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGA                       >  SRR4302535.3989558/1‑94 (MQ=60)

                                                                        ATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGA                       >  SRR4302535.1013125/1‑94 (MQ=60)

                                                                        ATAGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGA                       >  SRR4302535.3208661/1‑94 (MQ=60)

                                                                          AGCAATGAGTTTGATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGG                     <  SRR4302535.3799159/94‑1 (MQ=60)

                                                                          AGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGG                     >  SRR4302535.1964416/1‑94 (MQ=60)

                                                                          AGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGG                     <  SRR4302535.4593525/94‑1 (MQ=60)

                                                                          AGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGG                     >  SRR4302535.2872398/1‑94 (MQ=60)

                                                                          AGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGG                     <  SRR4302535.3745068/94‑1 (MQ=60)

                                                                          AGCAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAACCAGTACAACACCCGAGG                     >  SRR4302535.1393071/1‑94 (MQ=60)

                                                                          AGCAATGAGTTTAATAGCCGCGA‑GTTCCCCAGGAAGATTGGTTCCTGACCGATGCTAACGCGATTCCGCTCAAAATTCAGTACAACACCCGAGG                     >  SRR4302535.114007/1‑94 (MQ=60)

                                                                            CAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGA                   >  SRR4302535.2757191/1‑94 (MQ=60)

                                                                            CAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGA                   >  SRR4302535.3365195/1‑94 (MQ=60)

                                                                            CAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGA                   <  SRR4302535.3331558/94‑1 (MQ=60)

                                                                            CAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGA                   >  SRR4302535.2774773/1‑94 (MQ=60)

                                                                            CAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGA                   <  SRR4302535.3214889/94‑1 (MQ=60)

                                                                            CAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGA                   >  SRR4302535.2936192/1‑94 (MQ=60)

                                                                            CAATGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGA                   <  SRR4302535.2839249/94‑1 (MQ=60)

                                                                               TGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA                >  SRR4302535.3292080/1‑94 (MQ=60)

                                                                               TGAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA                >  SRR4302535.1051121/1‑94 (MQ=60)

                                                                                GAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAGCGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑G              <  SRR4302535.2579574/94‑1 (MQ=60)

                                                                                GAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑G              <  SRR4302535.1457712/94‑1 (MQ=60)

                                                                                GAGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑G              <  SRR4302535.1063310/94‑1 (MQ=60)

                                                                                 AGTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑GG             >  SRR4302535.4204516/1‑94 (MQ=60)

                                                                                  GTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑GGG            <  SRR4302535.1623914/94‑1 (MQ=60)

                                                                                  GTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑GGG            >  SRR4302535.996636/1‑94 (MQ=60)

                                                                                  GTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑GGG            >  SRR4302535.987217/1‑94 (MQ=60)

                                                                                  GTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑GGG            <  SRR4302535.113647/94‑1 (MQ=60)

                                                                                  GTTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGAACCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑GGG            >  SRR4302535.527665/1‑94 (MQ=60)

                                                                                   TTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑GGGG           <  SRR4302535.2440129/94‑1 (MQ=60)

                                                                                   TTTAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑GGGG           <  SRR4302535.3869555/94‑1 (MQ=60)

                                                                                     TAATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑GGGGGG         <  SRR4302535.1084400/94‑1 (MQ=60)

                                                                                      AATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑GGGGGga        <  SRR4302535.40129/94‑3 (MQ=60)

                                                                                       ATAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑GGGGGgag       >  SRR4302535.4142181/1‑91 (MQ=60)

                                                                                        TAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGGATG       <  SRR4302535.4522845/94‑1 (MQ=60)

                                                                                        TAGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGGATG       >  SRR4302535.1121846/1‑94 (MQ=60)

                                                                                         AGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGGATGC      >  SRR4302535.2323870/1‑94 (MQ=60)

                                                                                         AGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGGATGC      >  SRR4302535.4338287/1‑94 (MQ=60)

                                                                                         AGCCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGGATGC      >  SRR4302535.1115218/1‑94 (MQ=60)

                                                                                           CCGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGGATGCAA    >  SRR4302535.2838559/1‑94 (MQ=60)

                                                                                            CGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGGATGCAAC   >  SRR4302535.3610333/1‑94 (MQ=60)

                                                                                            CGTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGGATGCAAC   >  SRR4302535.4043330/1‑94 (MQ=60)

                                                                                             GTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGGATGCAACG  >  SRR4302535.4674596/1‑94 (MQ=60)

                                                                                             GTGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGGATGCAACG  <  SRR4302535.252359/94‑1 (MQ=60)

GCTGCGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGA‑GTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA‑GGGGGATGCAACG  >  NC_000913/3874486‑3874671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`