Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,899,957	(C)_5→6	coding (1373/1413 nt)	bglB ←	phospho‑beta‑glucosidase B

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,899,952	1	.	C	99.6%	765.7 / NA	247	L460V (CTG→GTG)	bglB	phospho‑beta‑glucosidase B
Reads supporting (aligned to +/- strand): ref base . (1/0); major base C (114/131); minor base A (1/0); total (116/131)
Fisher's exact test for biased strand distribution p-value = 4.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 273 total aligned reads displayed.

ATGGTGCAAAGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAG‑C‑CCCCGCGTCTTGATCACCTCTGCATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATC  >  NC_000913/3899860‑3900039

aTGGTGCAAAGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAg                                                                                           >  1:3734793/1‑93 (MQ=255)

 tGGTGCAAAGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAG‑c                                                                                         >  2:4468275/1‑93 (MQ=255)

   gTGCAAAGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTTAATGACAG‑c‑c                                                                                       <  1:1044472/93‑1 (MQ=255)

   gTGCAAAGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAG‑c‑cc                                                                                      <  1:4093037/93‑1 (MQ=255)

    tGCAAAGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAG‑c‑ccc                                                                                     >  2:3851203/1‑93 (MQ=255)

     gCAAAGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAG‑c‑cccc                                                                                    >  1:868127/1‑93 (MQ=255)

        aagaaagaATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAG‑c‑cccccgc                                                                                 >  1:3895456/1‑90 (MQ=255)

           aaagaaTTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTc                                                                               <  1:717988/93‑1 (MQ=255)

           aaagaaTTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTc                                                                               <  1:2745191/93‑1 (MQ=255)

            aagaaTTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCt                                                                              <  1:3355156/93‑1 (MQ=255)

             agaaTTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCtt                                                                             >  2:1087079/1‑93 (MQ=255)

                aTTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGAt                                                                          >  1:955582/1‑93 (MQ=255)

                aTTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGAt                                                                          <  1:2168339/93‑1 (MQ=255)

                 ttAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATc                                                                         <  1:2345369/93‑1 (MQ=255)

                 ttAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATc                                                                         <  2:4577442/93‑1 (MQ=255)

                 ttAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGAC‑CCCCGCGTCTTGATc                                                                         >  2:372632/1‑93 (MQ=255)

                    aCGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCAcc                                                                      >  2:299594/1‑93 (MQ=255)

                    aCGCATCGCATCCAGACTGTTCTGAATGCGACGATAATCAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATGAcc                                                                      <  2:4132984/93‑1 (MQ=255)

                         tcgcatcCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACctctac                                                                 >  2:1984612/1‑91 (MQ=255)

                         tcgcatcCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACctctac                                                                 <  2:4437492/93‑3 (MQ=255)

                         tcgcatcCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCGTGATCACctctac                                                                 <  2:4606044/93‑3 (MQ=255)

                          cgcatcCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCCCCTCTACa                                                                <  2:3220065/93‑1 (MQ=255)

                          cgcatcCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACa                                                                <  1:739464/93‑1 (MQ=255)

                           gcatcCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACAt                                                               <  2:1587424/93‑1 (MQ=255)

                              tcCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATAcc                                                            <  1:2116684/93‑1 (MQ=255)

                              tcCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAG‑CACCCCGCGTCTTGATCACCTCTACATAcc                                                            >  2:2706434/1‑93 (MQ=255)

                                cAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCAt                                                          >  2:2571951/1‑93 (MQ=255)

                                cAGACTGTTCTGAATGCGACCATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCAt                                                          <  2:4216438/93‑1 (MQ=255)

                                 aGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATc                                                         >  2:1542191/1‑93 (MQ=255)

                                  gACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATcc                                                        >  1:1189871/1‑93 (MQ=255)

                                    cTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGa                                                      >  1:2151114/1‑93 (MQ=255)

                                     tGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGaa                                                     <  1:1665871/93‑1 (MQ=255)

                                     tGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGaa                                                     >  1:2297562/1‑93 (MQ=255)

                                      gTTCTGAATGCGCCGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAg                                                    <  2:2127244/93‑1 (MQ=255)

                                       ttCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGc                                                   <  1:4650627/93‑1 (MQ=255)

                                        tCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGc                                                   >  2:434347/1‑93 (MQ=255)

                                          tGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCttt                                                <  2:1403260/93‑1 (MQ=255)

                                          tGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCCTTGTCACCCCTCCATACCATCCCAAACttt                                                >  2:866895/1‑93 (MQ=255)

                                            aaTGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTc                                              <  1:4155416/93‑1 (MQ=255)

                                            aaTGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTc                                              >  1:2389711/1‑93 (MQ=255)

                                             aTGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCt                                             <  2:1897395/93‑1 (MQ=255)

                                              tGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCtt                                            <  1:3970843/93‑1 (MQ=255)

                                                 gacgaTAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCg                                         >  1:3088452/1‑93 (MQ=255)

                                                 gacgaTAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCCTGCg                                         >  2:4147519/1‑93 (MQ=255)

                                                  acgaTAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCgt                                        <  1:2572053/93‑1 (MQ=255)

                                                  acgaTAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCgt                                        <  1:2720593/93‑1 (MQ=255)

                                                    gaTAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCgtgt                                      <  2:3689286/93‑1 (MQ=255)

                                                    gaTAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCgtgt                                      >  2:3650896/1‑93 (MQ=255)

                                                    gaTAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATAACATCCGAAGCTTTTCTTGCgtgt                                      >  1:2473415/1‑93 (MQ=255)

                                                     aTAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGtt                                     >  2:3115525/1‑93 (MQ=255)

                                                     aTAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGtt                                     >  2:3326156/1‑93 (MQ=255)

                                                      tAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTc                                    >  1:4417114/1‑93 (MQ=255)

                                                      tAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTc                                    <  2:1370884/93‑1 (MQ=255)

                                                      tAATTAAGGGGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGATTTTCTTGCGTGTTc                                    >  1:2070209/1‑93 (MQ=255)

                                                       aaTTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCt                                   >  1:1313158/1‑93 (MQ=255)

                                                       aaTTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCt                                   <  1:356517/93‑1 (MQ=255)

                                                       aaTTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCt                                   <  2:2650330/93‑1 (MQ=255)

                                                       aaTTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATAACATCCGAAGCTTTTCTTGCGTGTTCt                                   >  1:1619398/1‑93 (MQ=255)

                                                        aTTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCtt                                  <  2:1032926/93‑1 (MQ=255)

                                                         ttAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTtg                                 <  2:2820495/93‑1 (MQ=255)

                                                         ttAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTtg                                 <  1:41703/93‑1 (MQ=255)

                                                         ttAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTtg                                 <  1:55942/93‑1 (MQ=255)

                                                           aaGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTtgtg                               <  2:1461615/93‑1 (MQ=255)

                                                            aGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTtgtgg                              >  2:1654547/1‑92 (MQ=255)

                                                            aGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGa                              >  1:3523057/1‑93 (MQ=255)

                                                             ggTGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAg                             >  2:2206073/1‑93 (MQ=255)

                                                               tGCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGc                           >  2:1926979/1‑93 (MQ=255)

                                                                gCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGct                          >  2:496860/1‑93 (MQ=255)

                                                                gCTTTAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGCCTTGATTACCTCTACATACCATCCGAAGCTTTTTTTGCGTGTTCTTGTGAGGct                          >  2:3283563/1‑93 (MQ=255)

                                                                  tttAATTGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCCCCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGcttc                        <  1:1003761/93‑1 (MQ=255)

                                                                  tttAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGcttc                        >  1:788170/1‑93 (MQ=255)

                                                                   ttAATGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGcttcc                       <  2:2053619/93‑1 (MQ=255)

                                                                     taTGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGcttcctt                     <  1:461197/92‑1 (MQ=255)

                                                                       tGGTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGCTCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCg                   >  2:769766/1‑93 (MQ=255)

                                                                        ggTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGTGGCTTCCTTCGc                  >  1:4297172/1‑93 (MQ=255)

                                                                        ggTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGc                  >  1:4540985/1‑93 (MQ=255)

                                                                        ggTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGc                  >  2:3565208/1‑93 (MQ=255)

                                                                         gTTA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGcc                 <  1:1407534/93‑1 (MQ=255)

                                                                          ttA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCa                >  2:3390571/1‑93 (MQ=255)

                                                                          ttA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCa                >  1:1357019/1‑93 (MQ=255)

                                                                          ttA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCa                <  2:4020417/93‑1 (MQ=255)

                                                                          ttA‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCa                <  2:3858187/93‑1 (MQ=255)

                                                                            a‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCAtt              <  2:3099523/93‑1 (MQ=255)

                                                                            a‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCAtt              >  2:1216481/1‑93 (MQ=255)

                                                                            a‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCAtt              <  2:3494967/93‑1 (MQ=255)

                                                                            a‑TTTTTTTTAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCAtt              >  1:1628705/1‑93 (MQ=255)

                                                                              ttttttttAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTa             <  2:1712964/93‑1 (MQ=255)

                                                                               tttttttAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTat            <  1:3875543/93‑1 (MQ=255)

                                                                               tttttttAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTat            <  1:1767476/93‑1 (MQ=255)

                                                                                ttttttAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTatc           <  1:3039535/93‑1 (MQ=255)

                                                                                  ttttAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTatcat         <  1:3156492/93‑1 (MQ=255)

                                                                                    ttAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCTCCATTAtcatca       >  2:1281559/1‑93 (MQ=255)

                                                                                    ttAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTAtcatca       <  2:2416575/93‑1 (MQ=255)

                                                                                    ttAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTAtcatca       >  2:582912/1‑93 (MQ=255)

                                                                                    ttAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTAtcatca       >  1:3654593/1‑93 (MQ=255)

                                                                                     tAATGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCAc      >  1:485158/1‑93 (MQ=255)

                                                                                      aaTGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACg     <  1:2835904/93‑1 (MQ=255)

                                                                                      aaTGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACg     >  1:1956762/1‑93 (MQ=255)

                                                                                      aaTGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACg     >  1:1503407/1‑93 (MQ=255)

                                                                                       aTGACAGCC‑CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGa    <  1:2367261/93‑1 (MQ=255)

ATGGTGCAAAGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTA‑TTTTTTTTAATGACAG‑C‑CCCCGCGTCTTGATCACCTCTGCATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATC  >  NC_000913/3899860‑3900039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCAAAGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAG‑CCCCCGCGTCTTGATCACCTCTGCATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATAAATAA  >  NC_000913/3899864‑3900050

TGCAAAGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAG‑CCCCC                                                                                               >  SRR4302535.874272/1‑94 (MQ=60)

 GCAAAGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAG‑CCCCCC                                                                                              <  SRR4302535.2812331/94‑1 (MQ=60)

 GCAAAGAAAGAATTAACGCAGCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAG‑CCCCCC                                                                                              <  SRR4302535.3636323/94‑1 (MQ=60)

   AAAGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAG‑CCCCCcgc                                                                                            >  SRR4302535.3922152/1‑91 (MQ=60)

   AAAGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAG‑CCCCCcgc                                                                                            >  SRR4302535.745159/1‑91 (MQ=60)

   AAAGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAG‑CCCCCcgc                                                                                            >  SRR4302535.1482766/1‑91 (MQ=60)

     AGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGT                                                                                           >  SRR4302535.4332958/1‑94 (MQ=60)

     AGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGT                                                                                           >  SRR4302535.3743946/1‑94 (MQ=60)

       AAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCT                                                                                         <  SRR4302535.1654812/94‑1 (MQ=60)

       AAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCT                                                                                         <  SRR4302535.2764758/94‑1 (MQ=60)

       AAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCT                                                                                         <  SRR4302535.723031/94‑1 (MQ=60)

        AAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTT                                                                                        <  SRR4302535.3378517/94‑1 (MQ=60)

        AAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTT                                                                                        <  SRR4302535.4677952/94‑1 (MQ=60)

         AGAATTAACGCATCGCATCCATACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTG                                                                                       <  SRR4302535.994080/94‑1 (MQ=60)

           AATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGAT                                                                                     >  SRR4302535.962357/1‑94 (MQ=60)

           AATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGAT                                                                                     <  SRR4302535.993561/94‑1 (MQ=60)

            ATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATC                                                                                    <  SRR4302535.2183877/94‑1 (MQ=60)

             TTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCA                                                                                   <  SRR4302535.2362176/94‑1 (MQ=60)

              TAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCAC                                                                                  >  SRR4302535.1444335/1‑94 (MQ=60)

              TAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCAC                                                                                  <  SRR4302535.4617723/94‑1 (MQ=60)

              TAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCAC                                                                                  >  SRR4302535.1102782/1‑94 (MQ=60)

                  GCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCT                                                                              >  SRR4302535.2101736/1‑94 (MQ=60)

                   CATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTA                                                                             >  SRR4302535.3026368/1‑94 (MQ=60)

                   CATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTA                                                                             <  SRR4302535.770165/94‑1 (MQ=60)

                    ATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTAC                                                                            >  SRR4302535.1797618/1‑94 (MQ=60)

                    ATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTAC                                                                            >  SRR4302535.1679153/1‑94 (MQ=60)

                    ATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTAC                                                                            >  SRR4302535.2361447/1‑94 (MQ=60)

                     TCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACA                                                                           <  SRR4302535.1519827/94‑1 (MQ=60)

                     TCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACA                                                                           <  SRR4302535.1519830/94‑1 (MQ=60)

                      CGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACAT                                                                          >  SRR4302535.1725008/1‑94 (MQ=60)

                      CGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACAT                                                                          <  SRR4302535.744661/94‑1 (MQ=60)

                      CGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACAT                                                                          <  SRR4302535.4378927/94‑1 (MQ=60)

                         ATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACC                                                                       >  SRR4302535.2755896/1‑94 (MQ=60)

                         ATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACC                                                                       >  SRR4302535.2300001/1‑94 (MQ=60)

                          TCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCA                                                                      <  SRR4302535.4229668/94‑1 (MQ=60)

                          TCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCA                                                                      <  SRR4302535.2131955/94‑1 (MQ=60)

                            CAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACCTACCATC                                                                    >  SRR4302535.3578775/1‑94 (MQ=60)

                            CAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATC                                                                    <  SRR4302535.2435820/94‑1 (MQ=60)

                             AGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCC                                                                   >  SRR4302535.1198391/1‑94 (MQ=60)

                             AGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCC                                                                   >  SRR4302535.2101131/1‑94 (MQ=60)

                             AGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCC                                                                   >  SRR4302535.4679715/1‑94 (MQ=60)

                             AGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCA                                                                   >  SRR4302535.3935481/1‑94 (MQ=60)

                              GACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCG                                                                  >  SRR4302535.318516/1‑94 (MQ=60)

                               ACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGA                                                                 >  SRR4302535.2166579/1‑94 (MQ=60)

                                CTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAA                                                                >  SRR4302535.2314003/1‑94 (MQ=60)

                                CTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAA                                                                >  SRR4302535.469979/1‑94 (MQ=60)

                                 TGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAG                                                               <  SRR4302535.1677923/94‑1 (MQ=60)

                                   TTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCT                                                             <  SRR4302535.3741747/94‑1 (MQ=60)

                                   TTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCT                                                             <  SRR4302535.1874220/94‑1 (MQ=60)

                                   TTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCT                                                             <  SRR4302535.4682119/94‑1 (MQ=60)

                                   TTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCT                                                             <  SRR4302535.4242701/94‑1 (MQ=60)

                                    TCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTT                                                            <  SRR4302535.3762763/94‑1 (MQ=60)

                                    TCNGNNNNCGACGATAATTAANNNGCTTTAATGGTTATTTTTNTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTT                                                            <  SRR4302535.4503624/94‑1 (MQ=60)

                                     CTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTT                                                           <  SRR4302535.2738142/94‑1 (MQ=60)

                                       GAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTC                                                         >  SRR4302535.2406890/1‑94 (MQ=60)

                                        AATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCT                                                        <  SRR4302535.4183863/94‑1 (MQ=60)

                                          TGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTG                                                      <  SRR4302535.2955176/94‑1 (MQ=60)

                                          TGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTG                                                      <  SRR4302535.3997965/94‑1 (MQ=60)

                                            CGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCG                                                    >  SRR4302535.3109962/1‑94 (MQ=60)

                                             GACGATAATTAAGGTGCTTTAATGTTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGT                                                   <  SRR4302535.3064493/94‑1 (MQ=60)

                                              ACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTG                                                  <  SRR4302535.2590539/94‑1 (MQ=60)

                                              ACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTG                                                  <  SRR4302535.1040852/94‑1 (MQ=60)

                                              ACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTG                                                  <  SRR4302535.946009/94‑1 (MQ=60)

                                              ACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTG                                                  >  SRR4302535.1335221/1‑94 (MQ=60)

                                              ACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTG                                                  >  SRR4302535.1382313/1‑94 (MQ=60)

                                              ACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTG                                                  <  SRR4302535.2740028/94‑1 (MQ=60)

                                               CGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGT                                                 <  SRR4302535.4635962/94‑1 (MQ=60)

                                               CGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATAACATCCGAAGCTTTTCTTGCGTGT                                                 >  SRR4302535.2491256/1‑94 (MQ=60)

                                                 ATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTC                                               >  SRR4302535.4447355/1‑94 (MQ=60)

                                                 ATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTC                                               >  SRR4302535.4337644/1‑94 (MQ=60)

                                                 ATAATTAAGGGGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGATTTTCTTGCGTGTTC                                               >  SRR4302535.2085131/1‑94 (MQ=60)

                                                  TAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCT                                              >  SRR4302535.1322546/1‑94 (MQ=60)

                                                  TAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCT                                              >  SRR4302535.3162998/1‑94 (MQ=60)

                                                  TAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATAACATCCGAAGCTTTTCTTGCGTGTTCT                                              >  SRR4302535.1631075/1‑94 (MQ=60)

                                                   AATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTT                                             <  SRR4302535.358979/94‑1 (MQ=60)

                                                    ATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTG                                            >  SRR4302535.3535636/1‑94 (MQ=60)

                                                    ATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTG                                            >  SRR4302535.2701658/1‑94 (MQ=60)

                                                    ATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTG                                            >  SRR4302535.2203346/1‑94 (MQ=60)

                                                     TTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGT                                           <  SRR4302535.42019/94‑1 (MQ=60)

                                                     TTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGT                                           <  SRR4302535.56349/94‑1 (MQ=60)

                                                      TAAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTG                                          <  SRR4302535.4160693/94‑1 (MQ=60)

                                                       AAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGA                                         >  SRR4302535.3547523/1‑94 (MQ=60)

                                                       AAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGA                                         <  SRR4302535.2803018/94‑1 (MQ=60)

                                                       AAGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGA                                         >  SRR4302535.3906926/1‑94 (MQ=60)

                                                        AGGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAG                                        >  SRR4302535.2318576/1‑94 (MQ=60)

                                                        AGGTGCTTGAATGGTTATTTTTCTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAG                                        <  SRR4302535.2369219/94‑1 (MQ=60)

                                                         GGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACCTACCATCCGAAGGTTTTCTTTCGTGTTtttggtagg                                       >  SRR4302535.966199/1‑85 (MQ=60)

                                                         GGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGG                                       <  SRR4302535.3299237/94‑1 (MQ=60)

                                                         GGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGG                                       <  SRR4302535.4016619/94‑1 (MQ=60)

                                                         GGTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGG                                       <  SRR4302535.4188193/94‑1 (MQ=60)

                                                          GTGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGcg                                      >  SRR4302535.4534767/1‑92 (MQ=60)

                                                           TGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCT                                     >  SRR4302535.501939/1‑94 (MQ=60)

                                                           TGCTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCT                                     <  SRR4302535.2153729/94‑1 (MQ=60)

                                                             CTTTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTC                                   >  SRR4302535.793704/1‑94 (MQ=60)

                                                              TTTAATTGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCCCCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCC                                  <  SRR4302535.1010887/94‑1 (MQ=60)

                                                               TTAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCT                                 <  SRR4302535.166377/94‑1 (MQ=60)

                                                                TAATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTT                                >  SRR4302535.3687312/1‑94 (MQ=60)

                                                                 TATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTC                               <  SRR4302535.464419/94‑1 (MQ=60)

                                                                 AATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTC                               >  SRR4302535.1392160/1‑94 (MQ=60)

                                                                 AATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTC                               <  SRR4302535.682463/94‑1 (MQ=60)

                                                                  ATGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCG                              <  SRR4302535.4162088/94‑1 (MQ=60)

                                                                   TGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGTGGCTTCCTTCGC                             >  SRR4302535.4326580/1‑94 (MQ=60)

                                                                   TGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGC                             >  SRR4302535.4572042/1‑94 (MQ=60)

                                                                   TGGTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGC                             >  SRR4302535.471223/1‑94 (MQ=60)

                                                                     GTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCA                           <  SRR4302535.2050963/94‑1 (MQ=60)

                                                                     GTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCA                           <  SRR4302535.1417591/94‑1 (MQ=60)

                                                                     GTTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCA                           >  SRR4302535.1366727/1‑94 (MQ=60)

                                                                      TTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTTTACATACCATCCGAAGCTTTTCTTGCCTGTTCTTGTGAGGCTTCCTTTGTCAT                          >  SRR4302535.2459979/1‑94 (MQ=60)

                                                                      TTATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCAT                          >  SRR4302535.2132423/1‑94 (MQ=60)

                                                                       TATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATT                         >  SRR4302535.1640467/1‑94 (MQ=60)

                                                                        ATTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTA                        >  SRR4302535.738982/1‑94 (MQ=60)

                                                                         TTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTAT                       <  SRR4302535.3989610/94‑1 (MQ=60)

                                                                         TTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTAT                       <  SRR4302535.3644266/94‑1 (MQ=60)

                                                                         TTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTAT                       <  SRR4302535.3461923/94‑1 (MQ=60)

                                                                         TTTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTAT                       >  SRR4302535.1217517/1‑94 (MQ=60)

                                                                          TTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATC                      <  SRR4302535.1780293/94‑1 (MQ=60)

                                                                          TTTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATC                      <  SRR4302535.3902166/94‑1 (MQ=60)

                                                                           TTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCA                     >  SRR4302535.1145110/1‑94 (MQ=60)

                                                                           TTTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCA                     <  SRR4302535.3060822/94‑1 (MQ=60)

                                                                            TTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCAT                    <  SRR4302535.889626/94‑1 (MQ=60)

                                                                            TTTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCAT                    >  SRR4302535.2169917/1‑94 (MQ=60)

                                                                             TTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATC                   >  SRR4302535.3173850/1‑94 (MQ=60)

                                                                             TTTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATC                   <  SRR4302535.3178410/94‑1 (MQ=60)

                                                                              TTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCA                  <  SRR4302535.237791/94‑1 (MQ=60)

                                                                              TTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCA                  >  SRR4302535.3679893/1‑94 (MQ=60)

                                                                              TTTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATAACATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCA                  >  SRR4302535.120375/1‑94 (MQ=60)

                                                                               TTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCAC                 <  SRR4302535.2403232/94‑1 (MQ=60)

                                                                               TTAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCAC                 >  SRR4302535.488560/1‑94 (MQ=60)

                                                                                TAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACG                <  SRR4302535.1633524/94‑1 (MQ=60)

                                                                                TAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACG                >  SRR4302535.1970845/1‑94 (MQ=60)

                                                                                TAATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACG                >  SRR4302535.1514222/1‑94 (MQ=60)

                                                                                 AATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGA               <  SRR4302535.249189/94‑1 (MQ=60)

                                                                                 AATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGA               <  SRR4302535.2856029/94‑1 (MQ=60)

                                                                                 AATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGA               >  SRR4302535.3896669/1‑94 (MQ=60)

                                                                                  ATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGAT              <  SRR4302535.2384257/94‑1 (MQ=60)

                                                                                  ATGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACAAT              >  SRR4302535.73938/1‑94 (MQ=60)

                                                                                   TGACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATC             <  SRR4302535.253861/94‑1 (MQ=60)

                                                                                    GACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCC            >  SRR4302535.619116/1‑94 (MQ=60)

                                                                                     ACAGCCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCA           <  SRR4302535.557963/94‑1 (MQ=60)

                                                                                       agcCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACA         >  SRR4302535.4287943/4‑94 (MQ=60)

                                                                                       agcCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACA         <  SRR4302535.2820615/91‑1 (MQ=60)

                                                                                       agcCCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACA         >  SRR4302535.2950717/4‑94 (MQ=60)

                                                                                        C‑CCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATA       >  SRR4302535.2903056/1‑94 (MQ=60)

                                                                                          CCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATAA      <  SRR4302535.2891969/94‑1 (MQ=60)

                                                                                          CCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATAA      >  SRR4302535.1452315/1‑94 (MQ=60)

                                                                                          CCCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATAA      <  SRR4302535.1290907/94‑1 (MQ=60)

                                                                                           CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATAAA     >  SRR4302535.1284944/1‑94 (MQ=60)

                                                                                           CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATAAA     >  SRR4302535.199802/1‑94 (MQ=60)

                                                                                           CCCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATAAA     >  SRR4302535.4005145/1‑94 (MQ=60)

                                                                                            CCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATAAAT    <  SRR4302535.2955991/94‑1 (MQ=60)

                                                                                            CCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATAAAT    <  SRR4302535.847134/94‑1 (MQ=60)

                                                                                            CCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATAAAT    >  SRR4302535.2254466/1‑94 (MQ=60)

                                                                                            CCCGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATAAAT    <  SRR4302535.561197/94‑1 (MQ=60)

                                                                                              CGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATAAATAA  <  SRR4302535.3365881/94‑1 (MQ=60)

                                                                                              CGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATAAATAA  >  SRR4302535.4326292/1‑94 (MQ=60)

                                                                                              CGCGTCTTGATCACCTCTACATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATAAATAA  <  SRR4302535.4338348/94‑1 (MQ=60)

TGCAAAGAAAGAATTAACGCATCGCATCCAGACTGTTCTGAATGCGACGATAATTAAGGTGCTTTAATGGTTATTTTTTTTAATGACAG‑CCCCCGCGTCTTGATCACCTCTGCATACCATCCGAAGCTTTTCTTGCGTGTTCTTGTGAGGCTTCCTTCGCCATTATCATCACGATCCACATAAATAA  >  NC_000913/3899864‑3900050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`