Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,912,542 T→C D96G (GAT→GGT)  glmU ← N‑acetyl glucosamine‑1‑phosphate uridyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,912,5420TC100.0% 649.9 / NA 203D96G (GAT→GGT) glmUN‑acetyl glucosamine‑1‑phosphate uridyltransferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (116/87);  total (116/87)

Only 100 of 224 total aligned reads displayed.

ATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCATCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTC  >  NC_000913/3912452‑3912631
                                                                                          |                                                                                         
aTGCCGCCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTtcacca                                                                                         <  2:2019934/93‑1 (MQ=255)
aTGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTtcacca                                                                                         >  1:4137508/1‑93 (MQ=255)
aTGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTtcacca                                                                                         <  2:696622/93‑1 (MQ=255)
aTGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTtcacca                                                                                         >  2:3006048/1‑93 (MQ=255)
 tGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTcaccat                                                                                        <  1:130549/93‑1 (MQ=255)
 tGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTcaccat                                                                                        >  2:169619/1‑93 (MQ=255)
     aCCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGc                                                                                    >  2:507847/1‑93 (MQ=255)
       ccTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCaa                                                                                  >  2:159425/1‑93 (MQ=255)
       ccTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCaa                                                                                  >  2:1370235/1‑93 (MQ=255)
        cTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCaaa                                                                                 <  1:1623689/93‑1 (MQ=255)
        cTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCaaa                                                                                 <  1:3997589/93‑1 (MQ=255)
         tGCGGTTTAGCATCACGCAGACGCTGGAGTGATTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTGACCATCAGCaaag                                                                                >  2:3622364/1‑93 (MQ=255)
          gCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCaaaga                                                                               >  2:2751238/1‑93 (MQ=255)
            ggTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCaaagaaa                                                                             <  1:3526652/93‑1 (MQ=255)
            ggTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCaaagaaa                                                                             >  2:3868058/1‑93 (MQ=255)
             gTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCaaagaaag                                                                            >  2:791646/1‑93 (MQ=255)
             gTTTAGCATCACGCAGACGCTGCAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCCCCATCGGCaaagaaag                                                                            <  1:1086349/93‑1 (MQ=255)
              tttAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAgg                                                                           >  2:327475/1‑93 (MQ=255)
               ttAGCATCACGCAGTCGCTGGAGTGATTCGACAGAGCGCAGCGGCACGTCGCGGTAGCGCATTAAAATGTCTACACAATCGGCAAAGAAAgga                                                                          >  2:2988351/1‑92 (MQ=255)
               ttAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGt                                                                          >  1:1930655/1‑93 (MQ=255)
               ttAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGACACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGt                                                                          <  2:635259/93‑1 (MQ=255)
                tAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTg                                                                         <  2:810695/93‑1 (MQ=255)
                tAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTg                                                                         <  1:1426830/93‑1 (MQ=255)
                  gCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCg                                                                       <  1:1908726/93‑1 (MQ=255)
                  gCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCg                                                                       <  1:2319592/93‑1 (MQ=255)
                  gCATCACGCAGACGCTGGAGTGTGTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCg                                                                       <  2:2282145/93‑1 (MQ=255)
                   cATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCgg                                                                      <  2:4555162/93‑1 (MQ=255)
                     tCACGCAGACGCTGGAGTGTTTCGACAGAGATCATCGGCACGTCGCCGTAGATCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGcc                                                                    <  2:287465/93‑1 (MQ=255)
                     tCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGcc                                                                    >  1:914063/1‑93 (MQ=255)
                     tCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGcc                                                                    >  2:2390782/1‑93 (MQ=255)
                      cACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCct                                                                   >  1:4600043/1‑93 (MQ=255)
                      cACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCct                                                                   <  1:4250731/93‑1 (MQ=255)
                       aCGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGActg                                                                  >  2:1625435/1‑93 (MQ=255)
                        cGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCctgc                                                                 >  2:2610347/1‑93 (MQ=255)
                         gCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCctgct                                                                >  2:796978/1‑93 (MQ=255)
                          cAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCctgctg                                                               >  2:1525538/1‑93 (MQ=255)
                           aGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCtgctgc                                                              >  1:3504769/1‑93 (MQ=255)
                           aGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCtgctgc                                                              <  1:491436/93‑1 (MQ=255)
                            gACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgca                                                             >  1:3013891/1‑93 (MQ=255)
                            gACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgca                                                             <  2:1794522/93‑1 (MQ=255)
                            gACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgca                                                             >  1:2526327/1‑93 (MQ=255)
                                cTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgcattgc                                                         >  1:3354740/1‑93 (MQ=255)
                                 tGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgcattgca                                                        >  1:836763/1‑93 (MQ=255)
                                  ggAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgcattgcat                                                       <  2:2664632/93‑1 (MQ=255)
                                  ggAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgcattgcat                                                       >  1:3842936/1‑93 (MQ=255)
                                  ggAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCtgcattgcat                                                       <  2:3989781/93‑1 (MQ=255)
                                      tgtTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGAcc                                                   <  2:4161551/93‑1 (MQ=255)
                                        tttCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCg                                                 >  2:2109014/1‑93 (MQ=255)
                                        tttCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCg                                                 >  2:1661860/1‑93 (MQ=255)
                                        tttCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAAAGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCg                                                 >  1:2512732/1‑93 (MQ=255)
                                            gACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTAcc                                             >  1:3114202/1‑93 (MQ=255)
                                              cAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCa                                           >  2:865513/1‑93 (MQ=255)
                                              cAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCa                                           >  1:1396524/1‑93 (MQ=255)
                                                gagaTCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAgc                                         >  1:167684/1‑93 (MQ=255)
                                                gagaTCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAgc                                         >  1:196768/1‑93 (MQ=255)
                                                gagaTCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAgc                                         >  2:4034816/1‑93 (MQ=255)
                                                  gaTCAGCGGCACGTCGCCGTAGAGCATTAAAATGTATTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAgctg                                       >  1:2456949/1‑93 (MQ=255)
                                                    tCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAgctgct                                     <  2:2889749/93‑1 (MQ=255)
                                                     cAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGctc                                    <  1:373206/93‑1 (MQ=255)
                                                       gCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGctctc                                  >  1:1751884/1‑92 (MQ=255)
                                                       gCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTg                                  >  1:3653451/1‑93 (MQ=255)
                                                           cACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTg                              >  2:3940944/1‑93 (MQ=255)
                                                            aCGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGa                             >  1:3819006/1‑93 (MQ=255)
                                                             cGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGaa                            <  2:594466/93‑1 (MQ=255)
                                                              gTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAg                           <  1:1147174/93‑1 (MQ=255)
                                                                  ccGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGcccc                       >  1:2953369/1‑93 (MQ=255)
                                                                  ccGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCAcc                       >  1:2871092/1‑93 (MQ=255)
                                                                   cGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCAccc                      >  1:3856473/1‑93 (MQ=255)
                                                                   cGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCAccc                      >  1:4538641/1‑93 (MQ=255)
                                                                    gTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGCCCCGTACCCAGCTGCTCTGCCTGAAGCACCCa                     <  2:762076/93‑1 (MQ=255)
                                                                      agagCATTAAAATGTCTTGACCATCGGCAAAGAAAGGTGGGGCCTGCTGCATTGCATGATCCGTACCCAGCTGCTCTGCCTGAAGCACCCCGt                   >  2:4370600/1‑93 (MQ=255)
                                                                      agagCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGt                   <  2:4035763/93‑1 (MQ=255)
                                                                      agagCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGt                   <  2:4238386/93‑1 (MQ=255)
                                                                      agagCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGt                   <  1:653938/93‑1 (MQ=255)
                                                                      agagCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGt                   <  2:3447066/93‑1 (MQ=255)
                                                                       gagCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGtt                  >  2:1215394/1‑93 (MQ=255)
                                                                       gagCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGtt                  >  2:1137591/1‑93 (MQ=255)
                                                                       gagCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGtt                  <  2:293929/93‑1 (MQ=255)
                                                                        agCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTa                 >  2:3493703/1‑93 (MQ=255)
                                                                         gCATTAAAATGTCTTCACCCTCGGGAAAAAAAGGTCGGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTaa                <  1:4494346/93‑1 (MQ=255)
                                                                         gCATTAAAATGCCTTCACCATCGGCAAAGAAAGGTGCAGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGACTGAAGCACCCAGTTaa                >  2:138297/1‑93 (MQ=255)
                                                                         gCATTAAAAGGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTaa                <  1:43020/93‑1 (MQ=255)
                                                                          cATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAg               >  2:4404418/1‑93 (MQ=255)
                                                                           aTTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAgg              >  2:3706507/1‑93 (MQ=255)
                                                                            ttAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGt             <  2:2508067/93‑1 (MQ=255)
                                                                            ttAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGt             >  1:2082803/1‑93 (MQ=255)
                                                                            ttAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGt             >  2:2819074/1‑93 (MQ=255)
                                                                            ttAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGt             >  2:3111503/1‑93 (MQ=255)
                                                                             tAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGtt            >  1:1820942/1‑93 (MQ=255)
                                                                             tAAAATGTCTTCACCATCGGCAAAGAAAGGGGCGGGCTGCTGCATTGCATGACCCGTAGCCAGCTGCTCTGCCTGCAGCACCCAGTTAAGGtt            >  2:852337/1‑93 (MQ=255)
                                                                              aaaaTGTCTTCGCCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTg           <  2:1936663/93‑1 (MQ=255)
                                                                               aaaTGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTgt          <  2:4665289/93‑1 (MQ=255)
                                                                               aaaTGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTgt          <  1:2722475/93‑1 (MQ=255)
                                                                                 aTGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTgtcg        >  2:2422977/1‑93 (MQ=255)
                                                                                  tGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTgtcgt       >  1:61636/1‑93 (MQ=255)
                                                                                    tCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCt     >  2:2708482/1‑93 (MQ=255)
                                                                                    tCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCt     <  1:3670438/93‑1 (MQ=255)
                                                                                      ttCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCttt   >  1:2644990/1‑93 (MQ=255)
                                                                                       tcaccaTCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTc  >  1:477316/1‑93 (MQ=255)
                                                                                       tcaccaTCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTc  <  1:3071979/93‑1 (MQ=255)
                                                                                          |                                                                                         
ATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCATCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTC  >  NC_000913/3912452‑3912631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCATCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCAGCG  >  NC_000913/3912449‑3912635
                                                                                             |                                                                                             
CCAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCAC                                                                                               >  SRR4302535.1981044/1‑94 (MQ=60)
CCAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCAC                                                                                               >  SRR4302535.2816915/1‑94 (MQ=60)
CCAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCAC                                                                                               <  SRR4302535.4284241/94‑1 (MQ=60)
 CAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACC                                                                                              <  SRR4302535.2293540/94‑1 (MQ=60)
 CAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACC                                                                                              >  SRR4302535.2964900/1‑94 (MQ=60)
 CAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACC                                                                                              <  SRR4302535.2293539/94‑1 (MQ=60)
  AATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCA                                                                                             >  SRR4302535.4165841/1‑94 (MQ=60)
   ATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCAT                                                                                            >  SRR4302535.566666/1‑94 (MQ=60)
   ATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCAT                                                                                            >  SRR4302535.554629/1‑94 (MQ=60)
    TGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATC                                                                                           <  SRR4302535.131466/94‑1 (MQ=60)
      CCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGG                                                                                         <  SRR4302535.3692958/94‑1 (MQ=60)
       CACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGC                                                                                        <  SRR4302535.1692125/94‑1 (MQ=60)
        ACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCA                                                                                       >  SRR4302535.1437245/1‑94 (MQ=60)
          CCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAA                                                                                     <  SRR4302535.478616/94‑1 (MQ=60)
          CCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAA                                                                                     >  SRR4302535.3618681/1‑94 (MQ=60)
           CTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAG                                                                                    <  SRR4302535.1635413/94‑1 (MQ=60)
           CTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAG                                                                                    <  SRR4302535.4024941/94‑1 (MQ=60)
           CTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAG                                                                                    <  SRR4302535.627212/94‑1 (MQ=60)
              CGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAA                                                                                 >  SRR4302535.3776097/1‑94 (MQ=60)
               GGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAG                                                                                <  SRR4302535.3551139/94‑1 (MQ=60)
                GTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGG                                                                               >  SRR4302535.3907666/1‑94 (MQ=60)
                GTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGG                                                                               >  SRR4302535.1901751/1‑94 (MQ=60)
                GTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGG                                                                               >  SRR4302535.2168150/1‑94 (MQ=60)
                GTTTAGCATCACGCAGACGCTGCAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCCCCATCGGCAAAGAAAGG                                                                               <  SRR4302535.1094072/94‑1 (MQ=60)
                 TTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGT                                                                              >  SRR4302535.1944568/1‑94 (MQ=60)
                  TTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTG                                                                             <  SRR4302535.2491597/94‑1 (MQ=60)
                  TTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTG                                                                             <  SRR4302535.1941416/94‑1 (MQ=60)
                  TTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTG                                                                             >  SRR4302535.4623780/1‑94 (MQ=60)
                   TAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGC                                                                            <  SRR4302535.1437016/94‑1 (MQ=60)
                     GCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGG                                                                          <  SRR4302535.1922486/94‑1 (MQ=60)
                     GCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGG                                                                          <  SRR4302535.2336196/94‑1 (MQ=60)
                      CATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGC                                                                         <  SRR4302535.1133257/94‑1 (MQ=60)
                      CATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGC                                                                         <  SRR4302535.2650772/94‑1 (MQ=60)
                       ATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCC                                                                        >  SRR4302535.3741541/1‑94 (MQ=60)
                       ATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCC                                                                        >  SRR4302535.920558/1‑94 (MQ=60)
                        TCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCT                                                                       >  SRR4302535.4631331/1‑94 (MQ=60)
                         CACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTG                                                                      <  SRR4302535.4279848/94‑1 (MQ=60)
                           CGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCT                                                                    >  SRR4302535.3802107/1‑94 (MQ=60)
                           CGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCT                                                                    <  SRR4302535.3031103/94‑1 (MQ=60)
                             CAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGC                                                                  >  SRR4302535.3529124/1‑94 (MQ=60)
                              AGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCA                                                                 >  SRR4302535.3035015/1‑94 (MQ=60)
                              AGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCA                                                                 >  SRR4302535.2544527/1‑94 (MQ=60)
                              AGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCA                                                                 >  SRR4302535.4223673/1‑94 (MQ=60)
                              AGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCA                                                                 <  SRR4302535.494882/94‑1 (MQ=60)
                              AGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCA                                                                 >  SRR4302535.4296767/1‑94 (MQ=60)
                                 CGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTG                                                              <  SRR4302535.355039/94‑1 (MQ=60)
                                 CGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTG                                                              >  SRR4302535.3500365/1‑94 (MQ=60)
                                  GCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGC                                                             >  SRR4302535.3378100/1‑94 (MQ=60)
                                   CTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCA                                                            >  SRR4302535.842635/1‑94 (MQ=60)
                                    TGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCAT                                                           >  SRR4302535.2603262/1‑94 (MQ=60)
                                    TGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCAT                                                           >  SRR4302535.3869407/1‑94 (MQ=60)
                                     GGAGTGTTTCGACAGAGATCAGCGGCAAGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATG                                                          >  SRR4302535.352644/1‑94 (MQ=60)
                                      GAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGA                                                         >  SRR4302535.3088183/1‑94 (MQ=60)
                                          GTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCG                                                     >  SRR4302535.1854207/1‑94 (MQ=60)
                                          GTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAAAGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCG                                                     >  SRR4302535.2530849/1‑94 (MQ=60)
                                              CGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACC                                                 >  SRR4302535.3135882/1‑94 (MQ=60)
                                                ACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCA                                               >  SRR4302535.1406497/1‑94 (MQ=60)
                                                  AGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGC                                             >  SRR4302535.168848/1‑94 (MQ=60)
                                                  AGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGC                                             >  SRR4302535.198121/1‑94 (MQ=60)
                                                    AGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTG                                           <  SRR4302535.406376/94‑1 (MQ=60)
                                                    AGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTG                                           <  SRR4302535.1406506/94‑1 (MQ=60)
                                                    AGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTATTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTG                                           >  SRR4302535.2474668/1‑94 (MQ=60)
                                                     GATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGC                                          <  SRR4302535.3876027/94‑1 (MQ=60)
                                                     GATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGC                                          >  SRR4302535.2055915/1‑94 (MQ=60)
                                                      ATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCT                                         >  SRR4302535.2360893/1‑94 (MQ=60)
                                                        CAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCT                                       <  SRR4302535.375790/94‑1 (MQ=60)
                                                        CAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCT                                       <  SRR4302535.4029817/94‑1 (MQ=60)
                                                         AGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTG                                      >  SRR4302535.3678746/1‑94 (MQ=60)
                                                         AGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTC                                      >  SRR4302535.1764547/1‑94 (MQ=60)
                                                           CGGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCC                                    >  SRR4302535.1660761/1‑94 (MQ=60)
                                                            GGCACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCT                                   <  SRR4302535.1948540/94‑1 (MQ=60)
                                                              CACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGA                                 >  SRR4302535.3845359/1‑94 (MQ=60)
                                                              CACGTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGA                                 >  SRR4302535.485078/1‑94 (MQ=60)
                                                                 GTCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGC                              <  SRR4302535.1155347/94‑1 (MQ=60)
                                                                  TCGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCA                             <  SRR4302535.3866611/94‑1 (MQ=60)
                                                                   CGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCAC                            >  SRR4302535.298812/1‑94 (MQ=60)
                                                                   CGCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGAGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCAC                            >  SRR4302535.2533942/1‑94 (MQ=60)
                                                                    GCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCCCC                           >  SRR4302535.2974117/1‑94 (MQ=60)
                                                                    GCCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACC                           >  SRR4302535.2891433/1‑94 (MQ=60)
                                                                     CCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCC                          >  SRR4302535.3883025/1‑94 (MQ=60)
                                                                     CCGTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCC                          >  SRR4302535.4569688/1‑94 (MQ=60)
                                                                       GTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAG                        >  SRR4302535.272650/1‑94 (MQ=60)
                                                                       GTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAG                        <  SRR4302535.2322340/94‑1 (MQ=60)
                                                                       GTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAG                        <  SRR4302535.715175/94‑1 (MQ=60)
                                                                       GTAGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAG                        >  SRR4302535.447220/1‑94 (MQ=60)
                                                                         AGAGCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTT                      <  SRR4302535.658505/94‑1 (MQ=60)
                                                                            GCATTAAAATGTCTTCACCCTCGGGAAAAAAAGGTCGGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAG                   <  SRR4302535.4525197/94‑1 (MQ=60)
                                                                            GCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAG                   <  SRR4302535.1812871/94‑1 (MQ=60)
                                                                            GCATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAG                   <  SRR4302535.4525199/94‑1 (MQ=60)
                                                                            GCATTAAAAGGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAG                   <  SRR4302535.43344/94‑1 (MQ=60)
                                                                             CATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGG                  >  SRR4302535.2854877/1‑94 (MQ=60)
                                                                             CATGAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGG                  <  SRR4302535.2900073/94‑1 (MQ=60)
                                                                              ATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGT                 >  SRR4302535.2097805/1‑94 (MQ=60)
                                                                              ATTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGT                 >  SRR4302535.1602716/1‑94 (MQ=60)
                                                                               TTAAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTT                >  SRR4302535.1834098/1‑94 (MQ=60)
                                                                                 AAAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGT              <  SRR4302535.3220191/94‑1 (MQ=60)
                                                                                  AAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTC             <  SRR4302535.2741922/94‑1 (MQ=60)
                                                                                  AAATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTC             >  SRR4302535.133556/1‑94 (MQ=60)
                                                                                    ATGTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGT           >  SRR4302535.62099/1‑94 (MQ=60)
                                                                                      GTCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGCACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCT         <  SRR4302535.4526415/94‑1 (MQ=60)
                                                                                       TCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTT        >  SRR4302535.907594/1‑94 (MQ=60)
                                                                                       TCTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTT        <  SRR4302535.3695855/94‑1 (MQ=60)
                                                                                        CTTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTT       >  SRR4302535.2663933/1‑94 (MQ=60)
                                                                                         TTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTC      >  SRR4302535.480665/1‑94 (MQ=60)
                                                                                         TTCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTC      >  SRR4302535.1227727/1‑94 (MQ=60)
                                                                                          TCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCA     >  SRR4302535.915949/1‑94 (MQ=60)
                                                                                          TCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCA     <  SRR4302535.3093426/94‑1 (MQ=60)
                                                                                          TCACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCA     <  SRR4302535.3093427/94‑1 (MQ=60)
                                                                                           CACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCAG    <  SRR4302535.4386256/94‑1 (MQ=60)
                                                                                           CACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCAG    >  SRR4302535.3879996/1‑94 (MQ=60)
                                                                                            ACCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCAGC   >  SRR4302535.3098694/1‑94 (MQ=60)
                                                                                             CCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCAGCG  >  SRR4302535.1967580/1‑94 (MQ=60)
                                                                                             |                                                                                             
CCAATGCCACCCTGCGGTTTAGCATCACGCAGACGCTGGAGTGTTTCGACAGAGATCAGCGGCACGTCGCCGTAGAGCATTAAAATGTCTTCATCATCGGCAAAGAAAGGTGCGGCCTGCTGCATTGCATGACCCGTACCCAGCTGCTCTGCCTGAAGCACCCAGTTAAGGTTGTCGTCTTTCAGCG  >  NC_000913/3912449‑3912635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑