Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,923,857 T→C Q76R (CAG→CGG)  mioC ← MioC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,923,8570TC100.0% 767.2 / NA 238Q76R (CAG→CGG) mioCMioC
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (126/112);  total (126/112)

Only 100 of 242 total aligned reads displayed.

TCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCTGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAG  >  NC_000913/3923767‑3923946
                                                                                          |                                                                                         
tCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGt                                                                                         <  2:2358327/93‑1 (MQ=255)
tCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGt                                                                                         >  2:387427/1‑93 (MQ=255)
tCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGt                                                                                         >  2:4003822/1‑93 (MQ=255)
tCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGt                                                                                         >  1:1875099/1‑93 (MQ=255)
  gAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCGAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTc                                                                                       <  2:1392718/93‑1 (MQ=255)
   aGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTcc                                                                                      <  1:2744516/93‑1 (MQ=255)
     tttATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTg                                                                                    >  2:3958783/1‑93 (MQ=255)
          cGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATg                                                                               <  1:3591760/93‑1 (MQ=255)
             tAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCtt                                                                            >  1:2006988/1‑93 (MQ=255)
              aGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTc                                                                           >  2:2224521/1‑93 (MQ=255)
                 cccACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATa                                                                        <  1:1208999/93‑1 (MQ=255)
                 cccACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGACTTCCGTTCCTGCAATGCTTCATa                                                                        <  1:748168/93‑1 (MQ=255)
                  ccACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATag                                                                       <  2:2251591/93‑1 (MQ=255)
                  ccACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATag                                                                       >  1:3816093/1‑93 (MQ=255)
                     caAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaa                                                                    >  1:1693088/1‑93 (MQ=255)
                     caAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaa                                                                    <  2:3817095/93‑1 (MQ=255)
                      aaaaGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaag                                                                   >  1:4519539/1‑93 (MQ=255)
                        agggTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaagga                                                                 <  2:3747191/91‑1 (MQ=255)
                        aaGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaagga                                                                 <  2:1127878/93‑1 (MQ=255)
                        aaGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaagga                                                                 <  2:2913665/93‑1 (MQ=255)
                        aaGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaagga                                                                 <  1:2971092/93‑1 (MQ=255)
                         aGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggag                                                                <  1:41098/93‑1 (MQ=255)
                         aGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggag                                                                >  2:268210/1‑93 (MQ=255)
                         aGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGAGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggag                                                                >  1:46207/1‑93 (MQ=255)
                           gtgtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGATAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaa                                                              <  1:3300444/93‑1 (MQ=255)
                            tgtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaa                                                             <  2:477216/93‑1 (MQ=255)
                            tgtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaa                                                             <  2:326894/93‑1 (MQ=255)
                             gtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaag                                                            >  1:805477/1‑93 (MQ=255)
                             gtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaag                                                            <  2:855355/93‑1 (MQ=255)
                              tCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaagg                                                           >  1:4002803/1‑93 (MQ=255)
                              tCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaagg                                                           >  2:1005283/1‑93 (MQ=255)
                              tCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaagg                                                           <  2:1422646/93‑1 (MQ=255)
                               cATATTCACGACTGCCAATACCGATTGCGCCAAAGCGTACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCGTCATAGAAAGGAGAAAGGt                                                          <  2:4578286/93‑1 (MQ=255)
                               cATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGt                                                          >  2:1907184/1‑93 (MQ=255)
                               cATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGt                                                          <  2:696168/93‑1 (MQ=255)
                                 tatTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTg                                                        <  1:2150195/93‑1 (MQ=255)
                                 tatTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTg                                                        >  1:2853731/1‑93 (MQ=255)
                                  atTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGt                                                       <  1:1761509/93‑1 (MQ=255)
                                   ttCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTc                                                      <  1:1510399/93‑1 (MQ=255)
                                   ttCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTc                                                      >  2:2542354/1‑93 (MQ=255)
                                   ttCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTc                                                      >  2:3235518/1‑93 (MQ=255)
                                      aCGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCgg                                                   >  2:96960/1‑93 (MQ=255)
                                          cTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAata                                               <  2:274119/93‑1 (MQ=255)
                                          cTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAata                                               <  2:1652327/93‑1 (MQ=255)
                                           tGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAatat                                              >  2:526127/1‑93 (MQ=255)
                                           tGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAatat                                              <  1:2708882/93‑1 (MQ=255)
                                             ccAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATAtct                                            >  1:49191/1‑93 (MQ=255)
                                               aaTACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTcc                                          <  1:185208/93‑1 (MQ=255)
                                               aaTACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTcc                                          <  2:422213/93‑1 (MQ=255)
                                               aaTACCGATTGCGACAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTcc                                          <  2:3925497/93‑1 (MQ=255)
                                                 tgccGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCgg                                        >  2:2446690/3‑93 (MQ=255)
                                                 tACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCgg                                        >  1:1014205/1‑93 (MQ=255)
                                                   ccGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCa                                      <  1:353942/93‑1 (MQ=255)
                                                     gATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCAcc                                    >  1:715179/1‑93 (MQ=255)
                                                     gATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCAcc                                    >  1:1954013/1‑93 (MQ=255)
                                                      aTTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCg                                   >  2:1489527/1‑93 (MQ=255)
                                                      aTTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCg                                   <  1:1635072/93‑1 (MQ=255)
                                                      aTTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCg                                   <  1:4185162/93‑1 (MQ=255)
                                                         gcgcCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCgtgg                                <  2:4415540/93‑1 (MQ=255)
                                                         gcgcCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCgtgg                                <  1:1256703/93‑1 (MQ=255)
                                                           gcCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCgtgggt                              >  2:2973239/1‑93 (MQ=255)
                                                            ccAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCgtgggtg                             >  2:1299773/1‑93 (MQ=255)
                                                            ccAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCgtgggtg                             <  1:3317034/93‑1 (MQ=255)
                                                              aaaGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGa                           >  1:2260058/1‑93 (MQ=255)
                                                                aGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGc                         <  2:201618/93‑1 (MQ=255)
                                                                 gCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCt                        <  1:229729/93‑1 (MQ=255)
                                                                   ggACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGa                      <  1:1067096/93‑1 (MQ=255)
                                                                    gACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGAt                     >  2:1829402/1‑93 (MQ=255)
                                                                    gACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCAGAt                     >  2:1075668/1‑93 (MQ=255)
                                                                      cTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATaa                   >  2:307511/1‑93 (MQ=255)
                                                                       tGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAc                  <  1:3238720/93‑1 (MQ=255)
                                                                        gCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAcc                 >  2:4028046/1‑93 (MQ=255)
                                                                         cAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAcca                <  1:982327/93‑1 (MQ=255)
                                                                          aGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAccag               <  1:1373450/93‑1 (MQ=255)
                                                                          aGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAccag               >  1:2417934/1‑93 (MQ=255)
                                                                           gAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAccagc              >  2:2400999/1‑93 (MQ=255)
                                                                           gAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAccagc              >  1:605005/1‑93 (MQ=255)
                                                                             aaGATCGGTCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAccagcca            <  1:3172767/93‑1 (MQ=255)
                                                                             aaGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAccagcca            >  1:130787/1‑93 (MQ=255)
                                                                             aaGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAccagcca            <  2:4477898/93‑1 (MQ=255)
                                                                             aaGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAccagcca            <  1:3376805/93‑1 (MQ=255)
                                                                             aaGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAccagcca            <  2:2962832/93‑1 (MQ=255)
                                                                             aaGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTGGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAccagcca            <  1:23761/93‑1 (MQ=255)
                                                                               gATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGa          >  1:4129281/1‑93 (MQ=255)
                                                                               gATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGa          <  1:864508/93‑1 (MQ=255)
                                                                               gATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGa          <  1:2606385/93‑1 (MQ=255)
                                                                               gATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGa          >  2:4300408/1‑93 (MQ=255)
                                                                                aTCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGAt         <  2:3458501/93‑1 (MQ=255)
                                                                                aTCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGAt         <  1:4401149/93‑1 (MQ=255)
                                                                                 tCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATc        >  1:4233428/1‑93 (MQ=255)
                                                                                  cGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATcc       <  2:1121559/93‑1 (MQ=255)
                                                                                   gggCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATccc      <  2:3162490/93‑1 (MQ=255)
                                                                                   gggCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATccc      >  1:2049797/1‑93 (MQ=255)
                                                                                    ggCTTCCGTTCCTGCAATGCTTCATAGAAGGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCt     >  2:1747166/1‑93 (MQ=255)
                                                                                    ggCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACAAGCCAGATCCCt     >  2:45535/1‑93 (MQ=255)
                                                                                      cTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGa   >  1:4463979/1‑93 (MQ=255)
                                                                                      cTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGa   <  1:2204203/93‑1 (MQ=255)
                                                                                      cTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGa   <  2:2342250/93‑1 (MQ=255)
                                                                                       ttCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAg  >  1:3061343/1‑93 (MQ=255)
                                                                                       ttCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAg  <  1:3855054/93‑1 (MQ=255)
                                                                                          |                                                                                         
TCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCTGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAG  >  NC_000913/3923767‑3923946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCTGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGG  >  NC_000913/3923764‑3923947
                                                                                             |                                                                                          
GCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCC                                                                                            >  SRR4302535.4250761/1‑94 (MQ=60)
GCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCC                                                                                            <  SRR4302535.1480509/94‑1 (MQ=60)
GCCTCGAGTTTATCGATAGCCCCACAAAAGGCGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCC                                                                                            >  SRR4302535.4688567/1‑94 (MQ=60)
 CCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCG                                                                                           >  SRR4302535.3192164/1‑94 (MQ=60)
 CCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCG                                                                                           >  SRR4302535.3171421/1‑94 (MQ=60)
  CTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGT                                                                                          >  SRR4302535.1888604/1‑94 (MQ=60)
  CTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGT                                                                                          >  SRR4302535.1688548/1‑94 (MQ=60)
    CGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTC                                                                                        <  SRR4302535.2857179/94‑1 (MQ=60)
     GAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCC                                                                                       <  SRR4302535.3097521/94‑1 (MQ=60)
      AGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCT                                                                                      <  SRR4302535.3005994/94‑1 (MQ=60)
      AGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCT                                                                                      <  SRR4302535.2764080/94‑1 (MQ=60)
      AGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCT                                                                                      <  SRR4302535.1957742/94‑1 (MQ=60)
       GTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTG                                                                                     >  SRR4302535.4237001/1‑94 (MQ=60)
           ATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAAT                                                                                 <  SRR4302535.3363319/94‑1 (MQ=60)
             CGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGC                                                                               >  SRR4302535.1041935/1‑94 (MQ=60)
             CGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGC                                                                               <  SRR4302535.3616672/94‑1 (MQ=60)
              GATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCT                                                                              <  SRR4302535.2695817/94‑1 (MQ=60)
               ATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTT                                                                             >  SRR4302535.2021446/1‑94 (MQ=60)
                TAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTC                                                                            >  SRR4302535.1611517/1‑94 (MQ=60)
                TAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTC                                                                            >  SRR4302535.225070/1‑94 (MQ=60)
                 AGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCA                                                                           >  SRR4302535.2198202/1‑94 (MQ=60)
                 AGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCA                                                                           <  SRR4302535.4127410/94‑1 (MQ=60)
                  GCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCAT                                                                          <  SRR4302535.2756131/94‑1 (MQ=60)
                   CCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATA                                                                         >  SRR4302535.742793/1‑94 (MQ=60)
                    CCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAG                                                                        >  SRR4302535.4707775/1‑94 (MQ=60)
                    CCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAG                                                                        <  SRR4302535.1217687/94‑1 (MQ=60)
                    CCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAG                                                                        >  SRR4302535.3842421/1‑94 (MQ=60)
                    CCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGACTTCCGTTCCTGCAATGCTTCATAG                                                                        <  SRR4302535.753433/94‑1 (MQ=60)
                     CCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGA                                                                       <  SRR4302535.1674328/94‑1 (MQ=60)
                       ACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAA                                                                     >  SRR4302535.1705332/1‑94 (MQ=60)
                       ACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAA                                                                     >  SRR4302535.4496032/1‑94 (MQ=60)
                        CAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAG                                                                    <  SRR4302535.3230809/94‑1 (MQ=60)
                        CAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAG                                                                    <  SRR4302535.884166/94‑1 (MQ=60)
                        CAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAG                                                                    >  SRR4302535.4550514/1‑94 (MQ=60)
                         AAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGG                                                                   >  SRR4302535.537754/1‑94 (MQ=60)
                          AAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGA                                                                  >  SRR4302535.2026961/1‑94 (MQ=60)
                           AAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAG                                                                 <  SRR4302535.2991944/94‑1 (MQ=60)
                           AAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAG                                                                 >  SRR4302535.777145/1‑94 (MQ=60)
                           AAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGAGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAG                                                                 >  SRR4302535.46557/1‑94 (MQ=60)
                            AGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGA                                                                <  SRR4302535.41410/94‑1 (MQ=60)
                            AGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGA                                                                >  SRR4302535.436290/1‑94 (MQ=60)
                             GGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAA                                                               <  SRR4302535.1361635/94‑1 (MQ=60)
                              GTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGATAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAA                                                              <  SRR4302535.3323396/94‑1 (MQ=60)
                               TGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAG                                                             <  SRR4302535.1078256/94‑1 (MQ=60)
                               TGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAG                                                             >  SRR4302535.811128/1‑94 (MQ=60)
                               TGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAG                                                             >  SRR4302535.3377222/1‑94 (MQ=60)
                               TGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAG                                                             <  SRR4302535.3263877/94‑1 (MQ=60)
                               TGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAG                                                             <  SRR4302535.713162/94‑1 (MQ=60)
                               TGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAG                                                             <  SRR4302535.993461/94‑1 (MQ=60)
                                GTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGG                                                            >  SRR4302535.4030182/1‑94 (MQ=60)
                                   ATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTG                                                         >  SRR4302535.2873946/1‑94 (MQ=60)
                                    TATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGT                                                        <  SRR4302535.2165657/94‑1 (MQ=60)
                                     ATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTC                                                       >  SRR4302535.2093649/1‑94 (MQ=60)
                                     ATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTC                                                       <  SRR4302535.3299891/94‑1 (MQ=60)
                                     ATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTC                                                       <  SRR4302535.1774269/94‑1 (MQ=60)
                                      TTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCC                                                      <  SRR4302535.1521281/94‑1 (MQ=60)
                                      TTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCC                                                      >  SRR4302535.1251004/1‑94 (MQ=60)
                                       TCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCG                                                     >  SRR4302535.4527254/1‑94 (MQ=60)
                                             CTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATAT                                               >  SRR4302535.225834/1‑94 (MQ=60)
                                             CTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATAT                                               <  SRR4302535.3828645/94‑1 (MQ=60)
                                              TGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATC                                              <  SRR4302535.2728242/94‑1 (MQ=60)
                                               GCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCT                                             >  SRR4302535.2393887/1‑94 (MQ=60)
                                               GCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCT                                             >  SRR4302535.49561/1‑94 (MQ=60)
                                                 CAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTACGGAATATCTCC                                           >  SRR4302535.131325/1‑94 (MQ=60)
                                                  AATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCG                                          <  SRR4302535.186485/94‑1 (MQ=60)
                                                   ATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGG                                         >  SRR4302535.3702005/1‑94 (MQ=60)
                                                   ATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGG                                         >  SRR4302535.1021415/1‑94 (MQ=60)
                                                      CCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCAC                                      <  SRR4302535.356386/94‑1 (MQ=60)
                                                       CGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACC                                     <  SRR4302535.830583/94‑1 (MQ=60)
                                                       CGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACC                                     >  SRR4302535.3538401/1‑94 (MQ=60)
                                                       CGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACC                                     >  SRR4302535.720198/1‑94 (MQ=60)
                                                       CGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACC                                     >  SRR4302535.1818582/1‑94 (MQ=60)
                                                       CGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACC                                     >  SRR4302535.1968076/1‑94 (MQ=60)
                                                       CGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACC                                     >  SRR4302535.2893379/1‑94 (MQ=60)
                                                        GATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCG                                    >  SRR4302535.4152967/1‑94 (MQ=60)
                                                         ATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGT                                   <  SRR4302535.4213792/94‑1 (MQ=60)
                                                         ATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGT                                   <  SRR4302535.1646887/94‑1 (MQ=60)
                                                          TTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTG                                  <  SRR4302535.416826/94‑1 (MQ=60)
                                                          TTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTG                                  <  SRR4302535.4169901/94‑1 (MQ=60)
                                                           TGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGG                                 >  SRR4302535.4460546/1‑94 (MQ=60)
                                                            GCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGG                                <  SRR4302535.1265693/94‑1 (MQ=60)
                                                              GCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTG                              >  SRR4302535.1478962/1‑94 (MQ=60)
                                                              GCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTG                              >  SRR4302535.2143936/1‑94 (MQ=60)
                                                               CCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGG                             <  SRR4302535.3340114/94‑1 (MQ=60)
                                                                CAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGA                            >  SRR4302535.2276150/1‑94 (MQ=60)
                                                                  AAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGC                          >  SRR4302535.3170868/1‑94 (MQ=60)
                                                                  AAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGC                          >  SRR4302535.2473179/1‑94 (MQ=60)
                                                                   AGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCT                         <  SRR4302535.1759363/94‑1 (MQ=60)
                                                                   AGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCT                         <  SRR4302535.3904305/94‑1 (MQ=60)
                                                                    GCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTG                        <  SRR4302535.231312/94‑1 (MQ=60)
                                                                      GGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGAT                      <  SRR4302535.1074684/94‑1 (MQ=60)
                                                                       GACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATA                     <  SRR4302535.2724007/94‑1 (MQ=60)
                                                                       GACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATA                     <  SRR4302535.2296771/94‑1 (MQ=60)
                                                                        ACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAA                    >  SRR4302535.835612/1‑94 (MQ=60)
                                                                          TGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACC                  <  SRR4302535.1822289/94‑1 (MQ=60)
                                                                          TGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACC                  <  SRR4302535.3261207/94‑1 (MQ=60)
                                                                          TGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACC                  >  SRR4302535.3572781/1‑94 (MQ=60)
                                                                           GCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCA                 <  SRR4302535.332749/94‑1 (MQ=60)
                                                                           GCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCA                 <  SRR4302535.1919997/94‑1 (MQ=60)
                                                                            CAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAG                >  SRR4302535.2435339/1‑94 (MQ=60)
                                                                            CAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAG                <  SRR4302535.989307/94‑1 (MQ=60)
                                                                            CAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAG                <  SRR4302535.4274729/94‑1 (MQ=60)
                                                                            CAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAC                >  SRR4302535.2861391/1‑94 (MQ=60)
                                                                             AGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGC               <  SRR4302535.1234157/94‑1 (MQ=60)
                                                                             AGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGC               >  SRR4302535.609237/1‑94 (MQ=60)
                                                                             AGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGC               >  SRR4302535.3971187/1‑94 (MQ=60)
                                                                             AGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGC               <  SRR4302535.1383265/94‑1 (MQ=60)
                                                                               AAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCA             >  SRR4302535.131704/1‑94 (MQ=60)
                                                                               AAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCA             <  SRR4302535.1887177/94‑1 (MQ=60)
                                                                                AAGATCGGTCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAG            <  SRR4302535.3194730/94‑1 (MQ=60)
                                                                                AAGATCGGGCTTCCGTTCCTGGAATGCTTTATAGAAAAGAAGAAGGTTGGCCGGAATATCCTCGGCACCGTGGGTGGAGCTGATAACCAGCCAG            <  SRR4302535.1357680/94‑1 (MQ=53)
                                                                                AAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAG            <  SRR4302535.3400285/94‑1 (MQ=60)
                                                                                AAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTGGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAG            <  SRR4302535.23948/94‑1 (MQ=60)
                                                                                 AGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA           >  SRR4302535.4157535/1‑94 (MQ=60)
                                                                                  GATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGAT          <  SRR4302535.870617/94‑1 (MQ=60)
                                                                                  GATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGAT          <  SRR4302535.2625089/94‑1 (MQ=60)
                                                                                  AATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGAT          <  SRR4302535.722865/94‑1 (MQ=60)
                                                                                   ATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATC         <  SRR4302535.562570/94‑1 (MQ=60)
                                                                                   ATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATC         <  SRR4302535.4431267/94‑1 (MQ=60)
                                                                                   ATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATC         >  SRR4302535.4262398/1‑94 (MQ=60)
                                                                                    TCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCC        <  SRR4302535.4591052/94‑1 (MQ=60)
                                                                                     CGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCC       >  SRR4302535.240162/1‑94 (MQ=60)
                                                                                     CGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCC       >  SRR4302535.2064557/1‑94 (MQ=60)
                                                                                      GGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCT      >  SRR4302535.1348714/1‑94 (MQ=60)
                                                                                      GGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCT      <  SRR4302535.1978677/94‑1 (MQ=60)
                                                                                        GCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGA    <  SRR4302535.3874667/94‑1 (MQ=60)
                                                                                        GCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGA    >  SRR4302535.4494596/1‑94 (MQ=60)
                                                                                         CTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAG   >  SRR4302535.3082752/1‑94 (MQ=60)
                                                                                         CTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAG   <  SRR4302535.2219905/94‑1 (MQ=60)
                                                                                         CTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACAAGCCAGATCCCTGAG   >  SRR4302535.2359346/1‑94 (MQ=60)
                                                                                          TTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGG  <  SRR4302535.3881600/94‑1 (MQ=60)
                                                                                             |                                                                                          
GCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCTGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGG  >  NC_000913/3923764‑3923947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑