Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,929,188 |
(G)7→8 |
coding (246/1560 nt) |
kup → |
low affinity potassium transport system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,929,181 | 1 | . | G | 96.9%
| 595.6
/ 9.5
| 194 | coding (239/1560 nt) | kup | low affinity potassium transport system |
| Reads supporting (aligned to +/- strand): ref base . (5/1); new base G (101/87); total (106/88) |
| Fisher's exact test for biased strand distribution p-value = 2.24e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.69e-01 |
Only 100 of 238 total aligned reads displayed.
GTTTGGCTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑GGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGG > NC_000913/3929089‑3929268
|
gtTTGGCTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGa > 2:4508678/1‑93 (MQ=255)
tttGGCTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑g > 1:4258835/1‑93 (MQ=255)
tttGGCTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑g > 2:2914835/1‑93 (MQ=255)
tttGGCTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑g < 1:558792/93‑1 (MQ=255)
tttGGCTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑g > 1:4199983/1‑93 (MQ=255)
tGGCTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTTCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑ggg < 1:4585516/93‑1 (MQ=255)
tGGCTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑ggg < 2:2750239/93‑1 (MQ=255)
tGGCTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑ggg < 1:558089/93‑1 (MQ=255)
gCTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑ggg‑gg < 1:3262454/93‑1 (MQ=255)
cTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑ggg‑ggg < 1:1883963/93‑1 (MQ=255)
cTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGGGA‑ggg‑ggg > 1:2918950/1‑93 (MQ=255)
cTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGGGA‑ggg‑ggg < 2:4566052/93‑1 (MQ=255)
tttttATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑ggg‑ggg‑g > 2:2394174/1‑93 (MQ=255)
tttttATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑ggg‑ggg‑g > 1:2827178/1‑93 (MQ=255)
tttttATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑ggg‑ggg‑g > 2:1447765/1‑93 (MQ=255)
ttATCGCTGATCTTCTGTCTGCTAATCTTTGTGGTTTCCATTAAATATCTCCCCTTCGTGATGCGGGCAGATAACGCCGGTGA‑ggg‑ggg‑ggat < 2:363269/93‑4 (MQ=255)
tATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑ggg‑ggg‑ggatc > 1:92553/1‑89 (MQ=255)
tCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATACCGCCGGTGAGGGG‑GGG‑GATCCt < 2:2694140/93‑1 (MQ=255)
cTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGag > 2:395049/1‑92 (MQ=255)
cTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGAc > 1:2395781/1‑93 (MQ=255)
tGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACg > 1:2356359/1‑93 (MQ=255)
aTCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGtt > 2:1326996/1‑93 (MQ=255)
ttctGTCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGAt < 1:714253/93‑1 (MQ=255)
ttctGGCGGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGAGGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGAt < 1:2106566/93‑1 (MQ=255)
tctGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATg > 2:2447943/1‑93 (MQ=255)
tGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATACCGCCGTGGAGGGG‑GGG‑GATCCTGACGTTGATGTc < 1:2366666/93‑1 (MQ=255)
tGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTc > 1:452080/1‑93 (MQ=255)
ctgctAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCggt > 2:1050730/1‑91 (MQ=255)
tgctAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCtt > 2:3037119/1‑93 (MQ=255)
tgctAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCtt > 2:561416/1‑93 (MQ=255)
gctAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑ggg‑ggg‑ggat > 1:761338/1‑70 (MQ=255)
tAATCTTTGTGGTTTCCATTATATCTGTCACCTTCGTGATGCGGGAAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTGGCTTTcc > 2:1380127/1‑93 (MQ=255)
tAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GGTTCTGACGGTGATGTCGCTTGcc > 2:1238858/1‑93 (MQ=255)
atatttGTGGTTTCCATTAAATATCTCACATTCGTGATGCGGGCAGATAACGCCGGTGA‑GGG‑GGG‑GGTCCTGAAGTTGATCTCGCTTGCAggg > 2:2530057/4‑93 (MQ=255)
aTCTTTGTGGTTTCCATTAAATATCTCGCCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCgg < 1:697397/93‑1 (MQ=255)
aTCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCgg < 2:439533/93‑1 (MQ=255)
gtgGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTaa > 2:3212645/1‑93 (MQ=255)
tgGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGCTCACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAAt < 2:4687066/93‑1 (MQ=255)
tgGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAAt > 1:1522092/1‑93 (MQ=255)
tgGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAAt < 2:405683/93‑1 (MQ=255)
ggTTTCCATTAAATATCTCACGTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATa < 1:3037119/93‑1 (MQ=255)
ggTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATa > 1:336841/1‑93 (MQ=255)
gTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATAc > 1:3180451/1‑93 (MQ=255)
tttCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACg > 1:1334590/1‑93 (MQ=255)
ttCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGt > 1:2570202/1‑93 (MQ=255)
ttCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGt < 2:4420925/93‑1 (MQ=255)
tCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTc > 1:4455317/1‑93 (MQ=255)
ccATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCg > 1:795245/1‑93 (MQ=255)
cATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGAGAGGGG‑GGG‑GATCCTGACGTCGATGTCGCTTGCCGGGCGTAGTACGTCgg > 2:1840667/1‑93 (MQ=255)
ttAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGgcg > 1:4113658/1‑93 (MQ=255)
atatCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGaa < 1:1438253/93‑1 (MQ=255)
tatCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGGGTAATACGCCGGCGGGAAc > 1:1151036/1‑93 (MQ=255)
tatCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAAc > 2:648961/1‑93 (MQ=255)
atCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAAcc > 1:3630858/1‑93 (MQ=255)
tctcACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑GGG‑GGGAGATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACca > 1:2512729/1‑93 (MQ=255)
tcACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACcaca > 2:859040/1‑93 (MQ=255)
cACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACcacac > 2:3431591/1‑92 (MQ=255)
cACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACAt > 2:1142149/1‑93 (MQ=255)
cACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACAt < 1:1680668/93‑1 (MQ=255)
cACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACAt < 1:1713763/93‑1 (MQ=255)
cACCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACAt > 2:4183242/1‑93 (MQ=255)
cccTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATc < 2:1256104/92‑1 (MQ=255)
cccTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATc < 1:4389607/92‑1 (MQ=255)
cccTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATc < 1:1958943/92‑1 (MQ=255)
aCCTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATc > 2:4612004/1‑93 (MQ=255)
ccTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCa > 1:1839084/1‑93 (MQ=255)
cTTCGTGATGCGGGCCGATAACGCCGGTGAGGGG‑GGG‑GATCCTGGCGTTGATGTCGCTTGCCGGGCGTAATACGTGGGCGCGAACCACTTCaa > 2:3159980/1‑93 (MQ=255)
cTTCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCaa > 1:385363/1‑93 (MQ=255)
ttCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAAt < 2:2799099/93‑1 (MQ=255)
tCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATg > 1:2471307/1‑93 (MQ=255)
tCGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACAACATCaaac > 2:846542/1‑91 (MQ=255)
tCGTGATGCGGGCAGATAACGCCGGTGA‑GGGTGGC‑GACCCTTACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATg < 1:3087934/93‑1 (MQ=255)
cGTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGc < 2:180468/93‑1 (MQ=255)
gTGATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCt > 1:1047335/1‑93 (MQ=255)
gATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTgg > 2:3180485/1‑93 (MQ=255)
gATGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTgg > 1:1939492/1‑93 (MQ=255)
aTGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGt < 2:2567618/93‑1 (MQ=255)
tGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTg > 2:1564688/1‑93 (MQ=255)
tGCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTg > 2:3876438/1‑93 (MQ=255)
gCGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGa < 2:336180/93‑1 (MQ=255)
cGGGCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGAt > 1:3392274/1‑93 (MQ=255)
gggCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGAtt < 1:1097497/93‑1 (MQ=255)
ggCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTa > 1:4047402/1‑93 (MQ=255)
gCAGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTAt < 2:14875/93‑1 (MQ=255)
aGATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATgg < 1:2270947/93‑1 (MQ=255)
gATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATggg > 1:789677/1‑93 (MQ=255)
gATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATggg < 1:4180068/93‑1 (MQ=255)
gATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATggg < 2:2020162/93‑1 (MQ=255)
gATAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATggg > 1:3522402/1‑93 (MQ=255)
tAACGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGc < 1:2093824/93‑1 (MQ=255)
aCGCGGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTa < 2:2405170/93‑1 (MQ=255)
aCGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTa > 2:211469/1‑93 (MQ=255)
aCGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTa < 2:2302641/93‑1 (MQ=255)
cGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTaa < 1:186736/93‑1 (MQ=255)
cGCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTaa < 1:2642050/93‑1 (MQ=255)
gCCGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAAt < 1:4252543/93‑1 (MQ=255)
ccGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATc < 2:4117681/93‑1 (MQ=255)
ccGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATc < 1:2029451/93‑1 (MQ=255)
ccGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATc < 2:1714900/93‑1 (MQ=255)
ccGGTGAGGGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATc < 1:2874789/93‑1 (MQ=255)
|
GTTTGGCTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTGA‑GGG‑GGG‑GATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGG > NC_000913/3929089‑3929268
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑A‑GGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCTTTTTC > NC_000913/3929095‑3929281
|
gtttcTATCGCTGATCTCCTGGATGCTAATCTGTGTGGTTTCCATTAAATATCTCACCTTCGTGAGGCGGGCAGATAGCGCCGGTG‑A‑GGG‑GGG‑G < SRR4302535.4394246/89‑1 (MQ=60)
CTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑A‑GGG‑GGG‑G > SRR4302535.2410030/1‑94 (MQ=60)
CTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑A‑GGG‑GGG‑G > SRR4302535.2847243/1‑94 (MQ=60)
CTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑A‑GGG‑GGG‑G < SRR4302535.1881106/94‑1 (MQ=60)
CTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑A‑GGG‑GGG‑G < SRR4302535.3199590/94‑1 (MQ=60)
CTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑A‑GGG‑GGG‑G < SRR4302535.1897542/94‑1 (MQ=60)
CTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATCCGGGCAGATAACGCCGGTG‑A‑GGG‑GGG‑G > SRR4302535.684080/1‑94 (MQ=60)
TTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATC > SRR4302535.93208/1‑94 (MQ=60)
ATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCT < SRR4302535.132111/94‑1 (MQ=60)
ATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCT > SRR4302535.3671758/1‑94 (MQ=60)
ATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑A‑GGG‑GGG‑G‑ATCCTG > SRR4302535.2850052/1‑94 (MQ=60)
ATCACTGATCTTGTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCT < SRR4302535.4039322/94‑1 (MQ=60)
CGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGA > SRR4302535.1436971/1‑94 (MQ=60)
CGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGA < SRR4302535.7846/94‑1 (MQ=60)
GCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGAC > SRR4302535.2733238/1‑94 (MQ=60)
GCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGAC > SRR4302535.2413000/1‑94 (MQ=60)
CTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACG > SRR4302535.2373256/1‑94 (MQ=60)
TGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGT > SRR4302535.2192847/1‑94 (MQ=60)
GATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTT < SRR4302535.4462760/94‑1 (MQ=60)
GATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTT < SRR4302535.2978378/94‑1 (MQ=60)
GATCTTCTGGCTGCTAATCTTTGTGGTTGCCATTAAATATCTCTCCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTT < SRR4302535.2391166/94‑1 (MQ=60)
ATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTG > SRR4302535.4591731/1‑94 (MQ=60)
TTCTGTCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATG < SRR4302535.719269/94‑1 (MQ=60)
TTCTGGCGGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGAGGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATG < SRR4302535.2121761/94‑1 (MQ=60)
CTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTC > SRR4302535.2488581/1‑94 (MQ=60)
CTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTC < SRR4302535.3195646/94‑1 (MQ=60)
CTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTC > SRR4302535.455246/1‑94 (MQ=60)
CTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTC > SRR4302535.1922116/1‑94 (MQ=60)
TGNCNGNTNATCTNTGTGGNTTCCATTAAANATCTCACCTTCGTGATGCGGGCAGANAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCG < SRR4302535.695990/94‑1 (MQ=60)
TGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATACCGCCGTGG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCG < SRR4302535.2383655/94‑1 (MQ=60)
TGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCG < SRR4302535.3312409/94‑1 (MQ=60)
CTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAAGGCCGGTGCG‑GGG‑GGG‑G‑GTCCTGACGTTGATGTCGCTT > SRR4302535.1101138/1‑94 (MQ=60)
TGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTG > SRR4302535.4161459/1‑94 (MQ=60)
TGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑A‑GGG‑GGG‑Ggatcaccacgcagatcggaagag > SRR4302535.766704/1‑71 (MQ=60)
GCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGC < SRR4302535.4389035/94‑1 (MQ=60)
GCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑A‑GGG‑GGG‑GCATCCTGACGTTGATGTCGCTTGC > SRR4302535.715179/1‑94 (MQ=60)
AATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGG < SRR4302535.4509345/94‑1 (MQ=60)
ATCTTTGTGGTTTCCATTAAATATCTCGCCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGG < SRR4302535.702290/94‑1 (MQ=60)
ATCTTTGTGGTTTCCATTAAATATCTCCCCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGG < SRR4302535.1706947/94‑1 (MQ=60)
ATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGTAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGG > SRR4302535.2530935/1‑94 (MQ=60)
ATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGG < SRR4302535.1486844/94‑1 (MQ=60)
TTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGG > SRR4302535.1835318/1‑94 (MQ=60)
TGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAA > SRR4302535.4229344/1‑94 (MQ=60)
GTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAAT > SRR4302535.1533055/1‑94 (MQ=60)
GTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAAT < SRR4302535.4134622/94‑1 (MQ=60)
TGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATA > SRR4302535.339170/1‑94 (MQ=60)
GGTTTCCATTAAATATCTCACGTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATAC < SRR4302535.3058390/94‑1 (MQ=60)
GGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATAC > SRR4302535.3202436/1‑94 (MQ=60)
GGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATAC < SRR4302535.1876951/94‑1 (MQ=60)
GTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACG < SRR4302535.4433096/94‑1 (MQ=60)
GTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACG > SRR4302535.1344108/1‑94 (MQ=60)
TTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGT > SRR4302535.2588683/1‑94 (MQ=60)
TTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTC > SRR4302535.4485871/1‑94 (MQ=60)
TTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTC < SRR4302535.2537903/94‑1 (MQ=60)
TTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTC > SRR4302535.422319/1‑94 (MQ=60)
TCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCG > SRR4302535.800827/1‑94 (MQ=60)
TCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCG < SRR4302535.2979283/94‑1 (MQ=60)
TCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCG > SRR4302535.4587777/1‑94 (MQ=60)
CCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGG > SRR4302535.4095639/1‑94 (MQ=60)
CCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGG < SRR4302535.2772661/94‑1 (MQ=60)
CATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGC > SRR4302535.3429365/1‑94 (MQ=60)
ATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCG > SRR4302535.1307002/1‑94 (MQ=60)
ATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCG > SRR4302535.3401310/1‑94 (MQ=60)
ATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCG > SRR4302535.4141814/1‑94 (MQ=60)
AAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGA > SRR4302535.1105328/1‑94 (MQ=60)
AATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGGG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAA > SRR4302535.1549791/1‑94 (MQ=60)
ATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGGGTAATACGCCGGCGGGAAC > SRR4302535.1159257/1‑94 (MQ=60)
ATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAAC < SRR4302535.1448534/94‑1 (MQ=60)
ATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAAC < SRR4302535.4703335/94‑1 (MQ=60)
ATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAAC > SRR4302535.2080387/1‑94 (MQ=60)
TATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACC < SRR4302535.3266349/94‑1 (MQ=60)
TATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACC < SRR4302535.3402908/94‑1 (MQ=60)
TATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACC > SRR4302535.3656029/1‑94 (MQ=60)
ATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCA < SRR4302535.4285879/94‑1 (MQ=60)
ATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCA < SRR4302535.56226/94‑1 (MQ=60)
ATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑A‑GGG‑GGGAG‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCA > SRR4302535.2530846/1‑94 (MQ=60)
TCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACAT < SRR4302535.3587853/94‑1 (MQ=60)
CACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATC < SRR4302535.1692841/94‑1 (MQ=60)
CACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATC < SRR4302535.1726155/94‑1 (MQ=60)
CCCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCA < SRR4302535.4419641/94‑1 (MQ=60)
CCCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCA < SRR4302535.1973073/94‑1 (MQ=60)
ACCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCA > SRR4302535.1852349/1‑94 (MQ=60)
cccctcggtaatggggccaaaaacggcggtgagGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCA < SRR4302535.4208186/61‑1 (MQ=60)
CCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAA > SRR4302535.388041/1‑94 (MQ=60)
CCTTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAA > SRR4302535.2197012/1‑94 (MQ=60)
TTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATG > SRR4302535.2489122/1‑94 (MQ=60)
TTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATG > SRR4302535.199577/1‑94 (MQ=60)
TTCGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATG < SRR4302535.1906661/94‑1 (MQ=60)
TCGTGATGCGGGCAGATAACGCCGGTG‑A‑GGGTGGC‑G‑ACCCTTACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGC < SRR4302535.3109442/94‑1 (MQ=60)
CGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCT > SRR4302535.1054761/1‑94 (MQ=60)
CGTGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCT < SRR4302535.1558744/94‑1 (MQ=60)
TGATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGG > SRR4302535.1953461/1‑94 (MQ=60)
GATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGT < SRR4302535.2522664/94‑1 (MQ=60)
GATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGT > SRR4302535.2924717/1‑94 (MQ=60)
ATGCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTG > SRR4302535.805937/1‑94 (MQ=60)
GCGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGAT > SRR4302535.3415877/1‑94 (MQ=60)
CGGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATT > SRR4302535.864477/1‑94 (MQ=60)
GGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTA > SRR4302535.4075107/1‑94 (MQ=60)
GGGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTA < SRR4302535.1105309/94‑1 (MQ=60)
GGCAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTAT < SRR4302535.739564/94‑1 (MQ=60)
GCGGATAACGCCGGTG‑A‑GGG‑GGG‑GTATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATG < SRR4302535.799704/94‑1 (MQ=60)
CAGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGG < SRR4302535.936872/94‑1 (MQ=60)
ATATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGG < SRR4302535.3916295/94‑1 (MQ=60)
AGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGG > SRR4302535.795218/1‑94 (MQ=60)
AGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGG < SRR4302535.2287139/94‑1 (MQ=60)
AGATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGG > SRR4302535.3546865/1‑94 (MQ=60)
GATAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGG < SRR4302535.4208675/94‑1 (MQ=60)
GAGAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGCAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGG < SRR4302535.592401/94‑1 (MQ=60)
TAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCT < SRR4302535.2108917/94‑1 (MQ=60)
TAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCT < SRR4302535.2108918/94‑1 (MQ=60)
TAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCT < SRR4302535.3707684/94‑1 (MQ=60)
TAACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCT < SRR4302535.1971447/94‑1 (MQ=60)
ACGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAA > SRR4302535.4231939/1‑94 (MQ=60)
CGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAAT < SRR4302535.188024/94‑1 (MQ=60)
CGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAAT < SRR4302535.2660971/94‑1 (MQ=60)
AGCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAAT < SRR4302535.2660970/94‑1 (MQ=60)
GCCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATC < SRR4302535.4281680/94‑1 (MQ=60)
CCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCG < SRR4302535.2895157/94‑1 (MQ=60)
CCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCG < SRR4302535.2044079/94‑1 (MQ=60)
CCGGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCG < SRR4302535.2071160/94‑1 (MQ=60)
gcggtgagGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCG < SRR4302535.2300851/86‑1 (MQ=60)
GGTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGC < SRR4302535.1788357/94‑1 (MQ=60)
GTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCG < SRR4302535.780611/94‑1 (MQ=60)
GTG‑AGGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCG < SRR4302535.2757582/94‑1 (MQ=60)
agGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCA > SRR4302535.3811387/3‑94 (MQ=60)
agGGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCA < SRR4302535.547258/92‑1 (MQ=60)
GT‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCT < SRR4302535.3971463/94‑1 (MQ=60)
GG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCT < SRR4302535.1118008/94‑1 (MQ=60)
GG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCT < SRR4302535.4394167/94‑1 (MQ=60)
GG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCT < SRR4302535.4602858/94‑1 (MQ=60)
G‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCTT < SRR4302535.1901159/94‑1 (MQ=60)
GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCTTT < SRR4302535.3957655/94‑1 (MQ=60)
GG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCTTTT < SRR4302535.752408/94‑1 (MQ=60)
GG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCTTTT > SRR4302535.4681181/1‑94 (MQ=60)
GG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCTTTT < SRR4302535.828610/94‑1 (MQ=60)
G‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCTTTTT < SRR4302535.222776/94‑1 (MQ=60)
G‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCTTTTT < SRR4302535.876048/94‑1 (MQ=60)
G‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCTTTTT < SRR4302535.389508/94‑1 (MQ=60)
G‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCTTTTT < SRR4302535.4289936/94‑1 (MQ=60)
G‑ATCCTGACGTTTATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCTTTTTC < SRR4302535.1777594/94‑1 (MQ=60)
G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCGGCTTTTTT > SRR4302535.186421/1‑94 (MQ=60)
G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCTTTTTC < SRR4302535.1827022/94‑1 (MQ=60)
|
CTTTTTATCGCTGATCTTCTGGCTGCTAATCTTTGTGGTTTCCATTAAATATCTCACCTTCGTGATGCGGGCAGATAACGCCGGTG‑A‑GGG‑GGG‑G‑ATCCTGACGTTGATGTCGCTTGCCGGGCGTAATACGTCGGCGCGAACCACATCAATGCTGGTGATTATGGGGCTAATCGGCGGCAGCTTTTTC > NC_000913/3929095‑3929281
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
