Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,934,526 T→C V208A (GTT→GCT)  rbsB → D‑ribose periplasmic binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,934,5260TC100.0% 853.4 / NA 265V208A (GTT→GCT) rbsBD‑ribose periplasmic binding protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (162/103);  total (162/103)

Only 100 of 268 total aligned reads displayed.

AGTTTAATGTTCTTGCCAGCCAGCCAGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGTTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGTCGTCG  >  NC_000913/3934436‑3934615
                                                                                          |                                                                                         
 gTTTAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCa                                                                                        <  2:1090419/93‑1 (MQ=255)
 gTTTAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCa                                                                                        >  2:2538758/1‑93 (MQ=255)
 gTTTAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCa                                                                                        <  1:1272833/93‑1 (MQ=255)
  tttAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAg                                                                                       >  1:4468814/1‑93 (MQ=255)
  tttAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAg                                                                                       <  1:3546623/93‑1 (MQ=255)
    tAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGc                                                                                     <  2:128107/93‑1 (MQ=255)
    tAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGc                                                                                     <  2:3616528/93‑1 (MQ=255)
    tAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGc                                                                                     >  2:4433727/1‑93 (MQ=255)
    tAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGc                                                                                     >  2:1064668/1‑93 (MQ=255)
    tAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGc                                                                                     >  1:1244936/1‑93 (MQ=255)
     aaTGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCt                                                                                    >  1:1007310/1‑93 (MQ=255)
     aaTGTTCTTGCCAGCCAGCCGGCAGACTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCt                                                                                    >  2:1732284/1‑93 (MQ=255)
      aTGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTg                                                                                   >  2:4106218/1‑93 (MQ=255)
      aTGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTg                                                                                   >  2:3447758/1‑93 (MQ=255)
      aTGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTg                                                                                   <  1:2043953/93‑1 (MQ=255)
       tGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGt                                                                                  >  1:4617178/1‑93 (MQ=255)
        gTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTa                                                                                 >  1:3204447/1‑93 (MQ=255)
        gTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTa                                                                                 <  2:2378630/93‑1 (MQ=255)
         ttCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTAt                                                                                >  2:483195/1‑93 (MQ=255)
          tCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTAtt                                                                               <  1:586858/93‑1 (MQ=255)
            ttGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTcg                                                                             <  2:3300224/93‑1 (MQ=255)
             tGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTcgc                                                                            <  2:424462/93‑1 (MQ=255)
              gccagccagccgGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTcgcg                                                                           >  2:2023076/1‑93 (MQ=255)
                cagccagccggcAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCa                                                                         >  1:2937040/1‑93 (MQ=255)
                      gccggcAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAatga                                                                   <  2:1212215/93‑1 (MQ=255)
                      gccggcAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAatga                                                                   <  2:2829933/93‑1 (MQ=255)
                        cggcagATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAatgatg                                                                 >  1:823490/3‑93 (MQ=255)
                         ggcagATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAAtgatga                                                                <  2:1714925/92‑1 (MQ=255)
                         ggcagATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAAtgatga                                                                <  1:239541/92‑1 (MQ=255)
                         ggcagATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAAtgatga                                                                >  1:2252677/2‑93 (MQ=255)
                           cagATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGaaa                                                              <  2:3337509/93‑1 (MQ=255)
                           cagATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGaaa                                                              <  1:1072006/93‑1 (MQ=255)
                            agATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAAt                                                             >  1:730223/1‑93 (MQ=255)
                             gATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATg                                                            >  2:1875562/1‑93 (MQ=255)
                             gATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATg                                                            >  1:3885464/1‑93 (MQ=255)
                             gATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATg                                                            <  2:3848489/93‑1 (MQ=255)
                             gATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATg                                                            >  1:638050/1‑93 (MQ=255)
                              aTTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATgg                                                           <  1:376290/93‑1 (MQ=255)
                              aTTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATgg                                                           <  2:3575979/93‑1 (MQ=255)
                               ttttGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGgc                                                          >  1:3425948/1‑93 (MQ=255)
                                tttGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGgcg                                                         <  1:3269043/93‑1 (MQ=255)
                                  tGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCt                                                       >  1:2847670/1‑93 (MQ=255)
                                  tGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCt                                                       >  1:252829/1‑93 (MQ=255)
                                   gATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTg                                                      <  2:944875/93‑1 (MQ=255)
                                    aTCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTgg                                                     >  1:3351213/1‑93 (MQ=255)
                                     tCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTggg                                                    >  1:1489105/1‑93 (MQ=255)
                                     tCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTggg                                                    <  1:2719814/93‑1 (MQ=255)
                                       gCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGgcg                                                  >  1:2619792/1‑93 (MQ=255)
                                        cATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGgcgc                                                 <  1:4367700/93‑1 (MQ=255)
                                         aTTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGgcgcg                                                <  2:1524396/93‑1 (MQ=255)
                                         aTTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGgcgcg                                                >  1:2749801/1‑93 (MQ=255)
                                          ttAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGgcgcgc                                               >  2:2354602/1‑93 (MQ=255)
                                           tAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCt                                              >  2:4662098/1‑93 (MQ=255)
                                           tAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCt                                              >  2:2188132/1‑93 (MQ=255)
                                            aaaGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGAGCTGGGCGCGCTg                                             >  2:44164/1‑93 (MQ=255)
                                             aaGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTgc                                            >  1:1834343/1‑93 (MQ=255)
                                             aaGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTgc                                            <  2:3797385/93‑1 (MQ=255)
                                             aaGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTgc                                            >  2:4478668/1‑93 (MQ=255)
                                             aaGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTgc                                            >  2:2367371/1‑93 (MQ=255)
                                              aGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTgcg                                           <  1:3882916/93‑1 (MQ=255)
                                                gTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTgcgcg                                         >  1:1177898/1‑93 (MQ=255)
                                                 tttGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTgcgcgc                                        >  1:3057949/1‑93 (MQ=255)
                                                    gAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACt                                     >  2:2717747/1‑93 (MQ=255)
                                                      aCGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGc                                   <  1:4224550/93‑1 (MQ=255)
                                                       cGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCa                                  >  2:160997/1‑93 (MQ=255)
                                                        gTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCaa                                 >  2:2100578/1‑93 (MQ=255)
                                                        gTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCaa                                 <  2:2220681/93‑1 (MQ=255)
                                                        gTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCaa                                 >  2:2252052/1‑93 (MQ=255)
                                                         tAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCaaa                                <  2:3498771/93‑1 (MQ=255)
                                                         tAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGAGCTGGGCGCGCTGCGCGCACTGCaaa                                >  2:4324225/1‑93 (MQ=255)
                                                          aaTGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAAc                               <  2:3406248/93‑1 (MQ=255)
                                                          aaTGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAAc                               <  2:4177512/93‑1 (MQ=255)
                                                           aTGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACt                              >  2:2587588/1‑93 (MQ=255)
                                                           aTGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACt                              >  2:3247556/1‑93 (MQ=255)
                                                             gCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGc                            >  2:1352314/1‑93 (MQ=255)
                                                              cAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGcc                           <  1:2337881/93‑1 (MQ=255)
                                                              cAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGcc                           <  1:1998377/93‑1 (MQ=255)
                                                              cAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGcc                           >  2:1944130/1‑93 (MQ=255)
                                                                gAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCgg                         <  1:270865/93‑1 (MQ=255)
                                                                gAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCgg                         >  2:2005527/1‑93 (MQ=255)
                                                                gAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCgg                         >  1:91698/1‑93 (MQ=255)
                                                                 aaCCTGTTGACCGCTCATCCAGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGt                        >  2:2667667/1‑93 (MQ=255)
                                                                   ccTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTaa                      >  1:155261/1‑93 (MQ=255)
                                                                       ttGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCg                  <  1:67/93‑1 (MQ=255)
                                                                       ttGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCg                  >  2:805380/1‑93 (MQ=255)
                                                                         gACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGa                >  2:62396/1‑93 (MQ=255)
                                                                         gACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGa                >  1:3642545/1‑93 (MQ=255)
                                                                           ccGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGAtg              >  1:4614896/1‑93 (MQ=255)
                                                                            cGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGAtgt             <  1:1384810/93‑1 (MQ=255)
                                                                             gCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGAtgtg            >  2:3910041/1‑93 (MQ=255)
                                                                              cTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGa           >  2:4676465/1‑93 (MQ=255)
                                                                               tCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGAt          <  2:3204447/93‑1 (MQ=255)
                                                                               tCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGAt          <  2:2702254/93‑1 (MQ=255)
                                                                               tCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGAt          >  1:444184/1‑93 (MQ=255)
                                                                               tCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGAt          >  1:1582314/1‑93 (MQ=255)
                                                                                  tCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGgt       <  2:739832/93‑1 (MQ=255)
                                                                                  tCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGgt       <  1:3982014/93‑1 (MQ=255)
                                                                                  tCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGgt       >  1:484493/1‑93 (MQ=255)
                                                                                      gATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGgtcgtc   >  1:4308950/1‑93 (MQ=255)
                                                                                       aTGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGtcgtcg  >  1:1751855/1‑93 (MQ=255)
                                                                                          |                                                                                         
AGTTTAATGTTCTTGCCAGCCAGCCAGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGTTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGTCGTCG  >  NC_000913/3934436‑3934615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACAAGTTTAATGTTCTTGCCAGCCAGCCAGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGTTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGTCGTCGGATT  >  NC_000913/3934433‑3934619
                                                                                             |                                                                                             
ACAAGTTTAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGC                                                                                               >  SRR4302535.1709792/1‑94 (MQ=60)
 CAAGTTTAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCT                                                                                              >  SRR4302535.865116/1‑94 (MQ=60)
  AAGTTTAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTC                                                                                             <  SRR4302535.1478263/94‑1 (MQ=60)
   AGTTTAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCA                                                                                            >  SRR4302535.439378/1‑94 (MQ=60)
    GTTTAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAG                                                                                           <  SRR4302535.1281927/94‑1 (MQ=60)
    GTTTAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAG                                                                                           >  SRR4302535.4499477/1‑94 (MQ=60)
     TTTAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGG                                                                                          <  SRR4302535.1226057/94‑1 (MQ=60)
     TTTAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGG                                                                                          <  SRR4302535.3571246/94‑1 (MQ=60)
      TTAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGC                                                                                         >  SRR4302535.1253818/1‑94 (MQ=60)
       TAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCT                                                                                        >  SRR4302535.4647319/1‑94 (MQ=60)
       TAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCT                                                                                        >  SRR4302535.1768009/1‑94 (MQ=60)
       TAATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCT                                                                                        >  SRR4302535.1014468/1‑94 (MQ=60)
        AATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTG                                                                                       <  SRR4302535.439583/94‑1 (MQ=60)
        AATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTG                                                                                       >  SRR4302535.1978339/1‑94 (MQ=60)
         ATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGT                                                                                      >  SRR4302535.4154218/1‑94 (MQ=60)
         ATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGT                                                                                      >  SRR4302535.2309443/1‑94 (MQ=60)
         ATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGT                                                                                      <  SRR4302535.2058677/94‑1 (MQ=60)
         ATGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGT                                                                                      >  SRR4302535.4648554/1‑94 (MQ=60)
          TGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTA                                                                                     <  SRR4302535.1062488/94‑1 (MQ=60)
          TGTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTA                                                                                     >  SRR4302535.3226638/1‑94 (MQ=60)
           GTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTAT                                                                                    >  SRR4302535.1567253/1‑94 (MQ=60)
           GTTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTAT                                                                                    >  SRR4302535.4095846/1‑94 (MQ=60)
            TTCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATT                                                                                   >  SRR4302535.7610/1‑94 (MQ=60)
             TCTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTC                                                                                  <  SRR4302535.590969/94‑1 (MQ=60)
              CTTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCG                                                                                 >  SRR4302535.1706763/1‑94 (MQ=60)
               TTGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGC                                                                                <  SRR4302535.3084991/94‑1 (MQ=60)
                TGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCG                                                                               >  SRR4302535.657286/1‑94 (MQ=60)
                TGCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCG                                                                               >  SRR4302535.2553662/1‑94 (MQ=60)
                 GCCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGC                                                                              >  SRR4302535.4558924/1‑94 (MQ=60)
                  CCAGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCA                                                                             >  SRR4302535.2957704/1‑94 (MQ=60)
                    AGCCAGCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGA                                                                           >  SRR4302535.1266573/1‑94 (MQ=60)
                    AGCCAGCCGGCAGATTTTGATCGCATTAAAGGGTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGA                                                                           >  SRR4302535.3702875/1‑94 (MQ=60)
                         GCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGAT                                                                      <  SRR4302535.1673037/94‑1 (MQ=60)
                         GCCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGAT                                                                      <  SRR4302535.273146/94‑1 (MQ=60)
                          CCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCANGCTGTATTCGCGCAGNATGNTG                                                                     >  SRR4302535.3912794/1‑94 (MQ=60)
                          CCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATG                                                                     <  SRR4302535.2399755/94‑1 (MQ=60)
                          CCGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATG                                                                     >  SRR4302535.829263/1‑94 (MQ=60)
                           CGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGA                                                                    >  SRR4302535.2268717/1‑94 (MQ=60)
                           CGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGA                                                                    >  SRR4302535.3488519/1‑94 (MQ=60)
                           CGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGA                                                                    >  SRR4302535.440369/1‑94 (MQ=60)
                           CGGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGA                                                                    >  SRR4302535.3756010/1‑94 (MQ=60)
                            GGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAA                                                                   <  SRR4302535.241186/94‑1 (MQ=60)
                            GGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAA                                                                   >  SRR4302535.1527942/1‑94 (MQ=60)
                             GCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAA                                                                  <  SRR4302535.3480755/94‑1 (MQ=60)
                              CAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAAT                                                                 <  SRR4302535.1079620/94‑1 (MQ=60)
                              CAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAAT                                                                 >  SRR4302535.735350/1‑94 (MQ=60)
                               AGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATG                                                                >  SRR4302535.3912115/1‑94 (MQ=60)
                               AGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATG                                                                >  SRR4302535.642510/1‑94 (MQ=60)
                                GATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGG                                                               >  SRR4302535.734617/1‑94 (MQ=60)
                                 ATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGC                                                              >  SRR4302535.3449771/1‑94 (MQ=60)
                                 ATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGC                                                              <  SRR4302535.378900/94‑1 (MQ=60)
                                  TTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCG                                                             >  SRR4302535.4647941/1‑94 (MQ=60)
                                  TTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCG                                                             <  SRR4302535.3027450/94‑1 (MQ=60)
                                   TTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGC                                                            <  SRR4302535.733958/94‑1 (MQ=60)
                                   TTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGC                                                            <  SRR4302535.3291752/94‑1 (MQ=60)
                                    TTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCT                                                           >  SRR4302535.2867853/1‑94 (MQ=60)
                                    TTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCT                                                           <  SRR4302535.591072/94‑1 (MQ=60)
                                    TTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCT                                                           >  SRR4302535.254572/1‑94 (MQ=60)
                                    TTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCT                                                           >  SRR4302535.2047127/1‑94 (MQ=60)
                                      GATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGG                                                         >  SRR4302535.3374556/1‑94 (MQ=60)
                                       ATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGG                                                        <  SRR4302535.2587173/94‑1 (MQ=60)
                                       ATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGG                                                        <  SRR4302535.3436321/94‑1 (MQ=60)
                                       ATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGG                                                        >  SRR4302535.1499787/1‑94 (MQ=60)
                                        TCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGC                                                       <  SRR4302535.2739244/94‑1 (MQ=60)
                                         ctgATTAAAGGTTTGGACGTAATGCAGATCCTGTTGACCGCGCATCCGGATGCTCAGGCTGGATTCGCGCAGAATGATGAAATGGCGCTGGGCG                                                      <  SRR4302535.2308831/91‑1 (MQ=60)
                                         CGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCG                                                      >  SRR4302535.2638572/1‑94 (MQ=60)
                                         CGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCG                                                      <  SRR4302535.3911076/94‑1 (MQ=60)
                                           CATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCG                                                    >  SRR4302535.3637817/1‑94 (MQ=60)
                                           CATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCG                                                    <  SRR4302535.4397588/94‑1 (MQ=60)
                                           CATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCG                                                    >  SRR4302535.2769404/1‑94 (MQ=60)
                                            ATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGC                                                   >  SRR4302535.2391361/1‑94 (MQ=60)
                                             TTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCT                                                  >  SRR4302535.4424779/1‑94 (MQ=60)
                                               AAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGC                                                >  SRR4302535.1847580/1‑94 (MQ=60)
                                                AAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCG                                               <  SRR4302535.3878064/94‑1 (MQ=60)
                                                 AGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGC                                              <  SRR4302535.3909556/94‑1 (MQ=60)
                                                 AGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGC                                              >  SRR4302535.523723/1‑94 (MQ=60)
                                                  GGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCG                                             >  SRR4302535.1186301/1‑94 (MQ=60)
                                                   GTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGC                                            >  SRR4302535.3079341/1‑94 (MQ=60)
                                                   GTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGC                                            >  SRR4302535.2221222/1‑94 (MQ=60)
                                                       GAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTG                                        >  SRR4302535.3238774/1‑94 (MQ=60)
                                                        AACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGC                                       >  SRR4302535.4482772/1‑94 (MQ=60)
                                                         ACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCA                                      <  SRR4302535.4253455/94‑1 (MQ=60)
                                                         ACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCA                                      <  SRR4302535.613542/94‑1 (MQ=60)
                                                            TAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAAC                                   >  SRR4302535.2296546/1‑94 (MQ=60)
                                                            TAATGCAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAAC                                   >  SRR4302535.2500162/1‑94 (MQ=60)
                                                                 CAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCG                              <  SRR4302535.2012770/94‑1 (MQ=60)
                                                                 CAGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCG                              <  SRR4302535.2354609/94‑1 (MQ=60)
                                                                  AGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGG                             >  SRR4302535.473512/1‑94 (MQ=60)
                                                                  AGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGG                             >  SRR4302535.4518356/1‑94 (MQ=60)
                                                                  AGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGG                             >  SRR4302535.92346/1‑94 (MQ=60)
                                                                  AGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGG                             <  SRR4302535.1397335/94‑1 (MQ=60)
                                                                  AGAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGG                             >  SRR4302535.2891256/1‑94 (MQ=60)
                                                                   GAACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGT                            <  SRR4302535.272751/94‑1 (MQ=60)
                                                                    AACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTA                           >  SRR4302535.3077627/1‑94 (MQ=60)
                                                                     ACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAA                          >  SRR4302535.156355/1‑94 (MQ=60)
                                                                     ACCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAA                          >  SRR4302535.27427/1‑94 (MQ=60)
                                                                      CCTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAA                         <  SRR4302535.818959/94‑1 (MQ=60)
                                                                       CTGTTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAAT                        <  SRR4302535.494408/94‑1 (MQ=60)
                                                                          TTGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGG                     <  SRR4302535.69/94‑1 (MQ=60)
                                                                           TGACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGA                    >  SRR4302535.3667771/1‑94 (MQ=60)
                                                                           TGACCGCTCATCCGCATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGTGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGA                    <  SRR4302535.1384081/94‑1 (MQ=60)
                                                                            GACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGAT                   >  SRR4302535.1123383/1‑94 (MQ=60)
                                                                             gaCGCTCATCCGGATGCTCAGGCTGTAATCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATG                  <  SRR4302535.1856065/92‑1 (MQ=60)
                                                                             ACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATG                  >  SRR4302535.4646250/1‑94 (MQ=60)
                                                                             ACCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATG                  >  SRR4302535.1452228/1‑94 (MQ=60)
                                                                              CCGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGT                 <  SRR4302535.3404471/94‑1 (MQ=60)
                                                                               CGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTG                >  SRR4302535.316685/1‑94 (MQ=60)
                                                                               CGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTG                <  SRR4302535.11278/94‑1 (MQ=60)
                                                                               CGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTG                >  SRR4302535.2051892/1‑94 (MQ=60)
                                                                               CGCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTG                <  SRR4302535.1394695/94‑1 (MQ=60)
                                                                                GCTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGA               >  SRR4302535.3923553/1‑94 (MQ=60)
                                                                                 CTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGAT              >  SRR4302535.447293/1‑94 (MQ=60)
                                                                                 CTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGAT              <  SRR4302535.334864/94‑1 (MQ=60)
                                                                                 CTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGAT              >  SRR4302535.1291613/1‑94 (MQ=60)
                                                                                 CTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGAT              >  SRR4302535.1593735/1‑94 (MQ=60)
                                                                                 CTCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGAT              <  SRR4302535.285861/94‑1 (MQ=60)
                                                                                  TCATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGAGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATG             >  SRR4302535.932483/1‑94 (MQ=60)
                                                                                   CATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGG            <  SRR4302535.1570831/94‑1 (MQ=60)
                                                                                   CATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGG            >  SRR4302535.2795535/1‑94 (MQ=60)
                                                                                   CATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGG            >  SRR4302535.3270632/1‑94 (MQ=60)
                                                                                    ATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGT           >  SRR4302535.487889/1‑94 (MQ=60)
                                                                                    ATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGT           >  SRR4302535.2769345/1‑94 (MQ=60)
                                                                                    ATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGT           >  SRR4302535.4333013/1‑94 (MQ=60)
                                                                                    ATCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTG‑CGGTAAATCGGATGTGATGGTC          <  SRR4302535.2696120/94‑1 (MQ=60)
                                                                                     TCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAGATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGTC          <  SRR4302535.2706692/94‑1 (MQ=60)
                                                                                     TCCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGTC          <  SRR4302535.4009219/94‑1 (MQ=60)
                                                                                      CCGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGTCG         >  SRR4302535.85355/1‑94 (MQ=60)
                                                                                       CGGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCACACTGCCGGTAAATCGGATGTGATGGTCGT        >  SRR4302535.3811852/1‑94 (MQ=60)
                                                                                        GGATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGTCGTC       >  SRR4302535.4338430/1‑94 (MQ=60)
                                                                                         GATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGTCGTCG      <  SRR4302535.1252137/94‑1 (MQ=60)
                                                                                         GATGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGTCGTCG      >  SRR4302535.1764518/1‑94 (MQ=60)
                                                                                           TGCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGTCGTCGGT    >  SRR4302535.3811281/1‑94 (MQ=60)
                                                                                            GCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGTCGTCGGAT   <  SRR4302535.3216621/94‑1 (MQ=60)
                                                                                            GCTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGTCGTCGGAT   >  SRR4302535.4419839/1‑94 (MQ=60)
                                                                                             CTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGTCGTCGGATT  >  SRR4302535.3795981/1‑94 (MQ=60)
                                                                                             CTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGTCGTCGGATT  >  SRR4302535.4533371/1‑94 (MQ=60)
                                                                                             |                                                                                             
ACAAGTTTAATGTTCTTGCCAGCCAGCCAGCAGATTTTGATCGCATTAAAGGTTTGAACGTAATGCAGAACCTGTTGACCGCTCATCCGGATGTTCAGGCTGTATTCGCGCAGAATGATGAAATGGCGCTGGGCGCGCTGCGCGCACTGCAAACTGCCGGTAAATCGGATGTGATGGTCGTCGGATT  >  NC_000913/3934433‑3934619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑