Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,934,842 C→T intergenic (+48/‑78) rbsB → / → rbsK D‑ribose periplasmic binding protein/ribokinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,934,8420CT100.0% 832.1 / NA 227intergenic (+48/‑78)rbsB/rbsKD‑ribose periplasmic binding protein/ribokinase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (107/120);  total (107/120)

Only 100 of 231 total aligned reads displayed.

GGCTAAGTATCCGGTTGATCTGAAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGACAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCAAAACGCA  >  NC_000913/3934752‑3934931
                                                                                          |                                                                                         
ggCTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAg                                                                                         <  2:1489105/93‑1 (MQ=255)
 gCTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGa                                                                                        <  2:84759/93‑1 (MQ=255)
 gCTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGa                                                                                        <  2:82494/93‑1 (MQ=255)
 gCTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGa                                                                                        <  2:3216495/93‑1 (MQ=255)
  cTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGAt                                                                                       <  1:1485182/93‑1 (MQ=255)
  cTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGAt                                                                                       <  2:1964178/93‑1 (MQ=255)
   tAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATg                                                                                      <  2:4303568/93‑1 (MQ=255)
   tAAGCATCCGGATGATCTGGAACTGGTTGTTAAGAAATAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATg                                                                                      >  2:1853530/1‑93 (MQ=255)
     aGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGaa                                                                                    >  2:3395663/1‑93 (MQ=255)
     aGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGaa                                                                                    <  2:444184/93‑1 (MQ=255)
     aGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGaa                                                                                    >  1:2132172/1‑93 (MQ=255)
     aGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGaa                                                                                    <  2:729499/93‑1 (MQ=255)
      gTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAAc                                                                                   <  2:1220495/93‑1 (MQ=255)
      gTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAAc                                                                                   <  2:3943541/93‑1 (MQ=255)
       tATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACg                                                                                  <  2:466784/93‑1 (MQ=255)
        aTCCGGTTGATCTGGGACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACgt                                                                                 >  1:3658881/1‑93 (MQ=255)
        aTCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACgt                                                                                 <  1:3021716/93‑1 (MQ=255)
         tCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACgtg                                                                                <  2:2737953/93‑1 (MQ=255)
          ccGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACgtgt                                                                               <  2:2775773/93‑1 (MQ=255)
          ccGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACgtgt                                                                               <  1:2727385/93‑1 (MQ=255)
           cGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTa                                                                              >  1:3930114/1‑93 (MQ=255)
            ggTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTaa                                                                             >  2:476698/1‑93 (MQ=255)
             gTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAat                                                                            >  1:4597957/1‑93 (MQ=255)
             gTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAat                                                                            >  2:4203824/1‑93 (MQ=255)
              ttGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAata                                                                           <  2:2395171/93‑1 (MQ=255)
              ttGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAata                                                                           <  1:1208860/93‑1 (MQ=255)
                gATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAAtata                                                                         <  2:3609622/93‑1 (MQ=255)
                 aTCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATaa                                                                        >  2:540434/1‑93 (MQ=255)
                 aTCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATaa                                                                        >  2:3022227/1‑93 (MQ=255)
                  tCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATaaa                                                                       >  1:1329757/1‑93 (MQ=255)
                      gagcTGGTTGTTAAGCAGTAGTTTTAATCAGTTCGTATGCCCTGAGGATGACATAAATACGTGTTCGATAGCTGAACGTGTAATATAAAGaaa                                                                   <  1:3429347/90‑1 (MQ=255)
                       aaCTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGaaaa                                                                  <  2:3169327/93‑1 (MQ=255)
                       aaCTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGaaaa                                                                  <  1:267191/93‑1 (MQ=255)
                       aaCTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCAACGATAGATGAACGTGTAATATAAAGaaaa                                                                  >  1:1788205/1‑93 (MQ=255)
                        aCTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAg                                                                 <  1:3247556/93‑1 (MQ=255)
                         cTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGc                                                                >  1:1310295/1‑93 (MQ=255)
                         cTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGc                                                                <  1:495991/93‑1 (MQ=255)
                          tGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCa                                                               >  1:1897578/1‑93 (MQ=255)
                           ggTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAg                                                              <  2:3896849/93‑1 (MQ=255)
                           ggTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAg                                                              <  2:3785169/93‑1 (MQ=255)
                           ggTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAg                                                              >  2:3202425/1‑93 (MQ=255)
                           ggTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGATGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAg                                                              <  2:2784635/93‑1 (MQ=255)
                            gttgttAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAgg                                                             >  1:987562/1‑93 (MQ=255)
                            gttgttAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAgg                                                             >  2:632832/1‑93 (MQ=255)
                            gttgttAAGCAGTAGTTTTAATCAGGTTATATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAgg                                                             <  1:3835970/93‑1 (MQ=255)
                             ttgttAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAggg                                                            >  2:3463031/1‑93 (MQ=255)
                                ttAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCAc                                                         <  2:1930204/93‑1 (MQ=255)
                                  aaGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCAcgc                                                       >  1:2070968/1‑93 (MQ=255)
                                  aaGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCAcgc                                                       <  2:1834343/93‑1 (MQ=255)
                                      agtagtTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCa                                                   >  1:4657096/1‑93 (MQ=255)
                                      agtagtTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCa                                                   <  1:1883183/93‑1 (MQ=255)
                                       gtagtTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATTAACGTGTGATATAAAGAAAAGAAGGGGAAGCGacac                                                  >  2:1997626/1‑93 (MQ=255)
                                        tagtTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCcccc                                                 >  1:4099604/1‑93 (MQ=255)
                                            tttAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTaa                                             <  1:1130099/93‑1 (MQ=255)
                                            tttAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTaa                                             <  1:649034/93‑1 (MQ=255)
                                             ttAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAac                                            <  1:2500768/93‑1 (MQ=255)
                                              tAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAaca                                           <  2:4104321/93‑1 (MQ=255)
                                              tAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAaca                                           <  2:2882457/93‑1 (MQ=255)
                                                 tCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACgg                                        <  1:3185724/93‑1 (MQ=255)
                                                 tCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACgg                                        <  2:1120353/93‑1 (MQ=255)
                                                  cAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGt                                       <  1:1189337/93‑1 (MQ=255)
                                                     gTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGgc                                    >  1:591159/1‑93 (MQ=255)
                                                        gTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCa                                 >  1:725187/1‑93 (MQ=255)
                                                         tATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCAt                                >  1:3124931/1‑93 (MQ=255)
                                                          aTGACCTGATGTTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCAtt                               <  2:2585386/93‑1 (MQ=255)
                                                          aTGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCAtt                               <  2:1309379/93‑1 (MQ=255)
                                                            gACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCAtttt                             <  2:425506/93‑1 (MQ=255)
                                                             aCCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCAttttt                            >  2:3614658/1‑92 (MQ=255)
                                                             aCCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTa                            <  1:2454475/93‑1 (MQ=255)
                                                             aCCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTa                            >  1:4541288/1‑93 (MQ=255)
                                                             aCCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTa                            <  2:3056237/93‑1 (MQ=255)
                                                             aCCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTa                            >  1:1563862/1‑93 (MQ=255)
                                                             aCCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTa                            <  2:2059279/93‑1 (MQ=255)
                                                              ccTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGGGGCGCATTTTAt                           >  1:929292/1‑93 (MQ=255)
                                                               cTGATGGTGAAATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAATGCGGGGCGCGCGCCCCCCTAACACGGTGGCGCATTTTATg                          <  2:156761/93‑1 (MQ=255)
                                                                 gATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGa                        <  2:2171950/93‑1 (MQ=255)
                                                                 gATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGa                        >  2:1604457/1‑93 (MQ=255)
                                                                   tGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACa                      <  1:1049353/93‑1 (MQ=255)
                                                                    ggTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACAt                     >  2:4631891/1‑93 (MQ=255)
                                                                    ggTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACAt                     <  2:2709913/93‑1 (MQ=255)
                                                                      tGACATAAATACGTCATCGATAGATGAAAGTGGAATATAAAGAAAAGCAGGGCACGGGCCAACCTAACACGGTGGCGCATTTTATGGACATcc                   >  2:414295/1‑93 (MQ=255)
                                                                       gACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATccc                  <  1:2348646/93‑1 (MQ=255)
                                                                       gACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATccc                  <  1:3282697/93‑1 (MQ=255)
                                                                        aCATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCg                 <  2:4527914/93‑1 (MQ=255)
                                                                         cATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGGCACCCTCACACGGTGGGGCATTTTTTGGTCATcccca                >  2:981584/1‑91 (MQ=255)
                                                                         cATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCCAAAACCGTGGCGCATTTTTTGGACATcccca                >  2:3431740/1‑91 (MQ=255)
                                                                         cATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCCACCCCCTAACACCGTTGGCCCTTTTATTGGCATcccta                >  2:1032289/1‑91 (MQ=255)
                                                                          aTAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGACACCCTAACACGGTGGCGCATTTTATGGACATCCCGaa               >  1:3800118/1‑93 (MQ=255)
                                                                           tAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAat              >  1:3492636/1‑93 (MQ=255)
                                                                           tAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAat              <  2:1115433/93‑1 (MQ=255)
                                                                           tAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGAGCATTTTATGGACATCCCGAat              >  2:2244873/1‑93 (MQ=255)
                                                                           tAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGCGCACGCGCCTCCCTAACACGGTGTCGCATTTTATGGACATCCCGAat              <  1:3588169/93‑1 (MQ=255)
                                                                                 cGTCATCGATAGATGAACGTGTAATATAGAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCaa        <  2:2505438/93‑1 (MQ=255)
                                                                                  gTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCaaa       <  2:3663932/93‑1 (MQ=255)
                                                                                   tCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCaaaa      <  1:3391337/93‑1 (MQ=255)
                                                                                   tCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCaaaa      <  2:3241215/93‑1 (MQ=255)
                                                                                   tCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCaaaa      <  1:197217/93‑1 (MQ=255)
                                                                                   tCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCaaaa      <  1:1871874/93‑1 (MQ=255)
                                                                                    cATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGTGCCACCCTAACACGGGGGGGCATTTTATGGACATCCCGAACATGCaaagc     >  1:1273592/1‑91 (MQ=255)
                                                                                       cGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCAAAACgca  <  1:2188132/93‑1 (MQ=255)
                                                                                          |                                                                                         
GGCTAAGTATCCGGTTGATCTGAAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGACAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCAAAACGCA  >  NC_000913/3934752‑3934931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCAGGCTAAGTATCCGGTTGATCTGAAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGACAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCAAAACGCAGGC  >  NC_000913/3934749‑3934934
                                                                                             |                                                                                            
TCAGGCTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGAT                                                                                              <  SRR4302535.2484091/94‑1 (MQ=60)
TCAGGCTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGAT                                                                                              <  SRR4302535.4517854/94‑1 (MQ=60)
TCAGGCTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGAT                                                                                              <  SRR4302535.2220350/94‑1 (MQ=60)
 CAGGCTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATA                                                                                             >  SRR4302535.4107470/1‑94 (MQ=60)
 CAGGCTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATA                                                                                             <  SRR4302535.2255274/94‑1 (MQ=60)
 CAGGCTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATA                                                                                             >  SRR4302535.4379759/1‑94 (MQ=60)
 CAGGCTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATA                                                                                             <  SRR4302535.2137808/94‑1 (MQ=60)
  AGGCTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAG                                                                                            >  SRR4302535.1203734/1‑94 (MQ=60)
  AGGCTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAG                                                                                            <  SRR4302535.683058/94‑1 (MQ=60)
   GGCTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGA                                                                                           <  SRR4302535.990533/94‑1 (MQ=60)
     CTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATG                                                                                         <  SRR4302535.3083498/94‑1 (MQ=60)
     CTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATG                                                                                         >  SRR4302535.608253/1‑94 (MQ=60)
     CTAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATG                                                                                         <  SRR4302535.1495812/94‑1 (MQ=60)
      TAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGA                                                                                        >  SRR4302535.3573229/1‑94 (MQ=60)
      TAAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGA                                                                                        <  SRR4302535.2037658/94‑1 (MQ=60)
       AAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAA                                                                                       >  SRR4302535.2147542/1‑94 (MQ=60)
       AAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAA                                                                                       <  SRR4302535.2371484/94‑1 (MQ=60)
       AAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAA                                                                                       >  SRR4302535.1335340/1‑94 (MQ=60)
       AAGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAA                                                                                       <  SRR4302535.725582/94‑1 (MQ=60)
        AGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAAG                                                                                      >  SRR4302535.1947173/1‑94 (MQ=60)
        AGTATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAAC                                                                                      <  SRR4302535.1306261/94‑1 (MQ=60)
          TATCCGGTTGATCTGGGACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGT                                                                                    >  SRR4302535.3684207/1‑94 (MQ=60)
          TATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGT                                                                                    <  SRR4302535.1124778/94‑1 (MQ=60)
           ATCCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTG                                                                                   <  SRR4302535.3042875/94‑1 (MQ=60)
             CCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTA                                                                                 >  SRR4302535.3956953/1‑94 (MQ=60)
             CCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTA                                                                                 >  SRR4302535.3637222/1‑94 (MQ=60)
             CCGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTA                                                                                 <  SRR4302535.2746862/94‑1 (MQ=60)
              CGGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAA                                                                                <  SRR4302535.466655/94‑1 (MQ=60)
               GGTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAAT                                                                               >  SRR4302535.4629236/1‑94 (MQ=60)
                GTTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATA                                                                              <  SRR4302535.4714622/94‑1 (MQ=60)
                 TTGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATAT                                                                             <  SRR4302535.1217548/94‑1 (MQ=60)
                  TGATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATA                                                                            >  SRR4302535.845701/1‑94 (MQ=60)
                    ATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAA                                                                          >  SRR4302535.3600779/1‑94 (MQ=60)
                    ATCTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAA                                                                          >  SRR4302535.1339241/1‑94 (MQ=60)
                      CTGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGA                                                                        <  SRR4302535.1549644/94‑1 (MQ=60)
                       TGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAA                                                                       >  SRR4302535.3301192/1‑94 (MQ=60)
                       TGGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAA                                                                       <  SRR4302535.190390/94‑1 (MQ=60)
                        GGAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAA                                                                      >  SRR4302535.3276974/1‑94 (MQ=60)
                         gagCTGGTTGTTAAGCAGTAGTTTTAATCAGTTCGTATGCCCTGAGGATGACATAAATACGTGTTCGATAGCTGAACGTGTAATATAAAGAAAA                                                                     <  SRR4302535.3453184/91‑1 (MQ=47)
                         GAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCAACGATAGATGAACGTGTAATATAAAGAAAA                                                                     >  SRR4302535.1801143/1‑94 (MQ=60)
                          AACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAG                                                                    <  SRR4302535.269046/94‑1 (MQ=60)
                           ACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGC                                                                   <  SRR4302535.3270113/94‑1 (MQ=60)
                           ACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGC                                                                   >  SRR4302535.1319660/1‑94 (MQ=60)
                           ACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGC                                                                   <  SRR4302535.2141716/94‑1 (MQ=60)
                            CTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCA                                                                  <  SRR4302535.499474/94‑1 (MQ=60)
                            CTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCA                                                                  >  SRR4302535.1911229/1‑94 (MQ=60)
                              GGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGG                                                                >  SRR4302535.994578/1‑94 (MQ=60)
                               GTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGG                                                               <  SRR4302535.272912/94‑1 (MQ=60)
                               GTTGTTAAGCAGTAGTTTTAATCAGGTTATATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGG                                                               <  SRR4302535.3862420/94‑1 (MQ=60)
                                  GTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATATGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCAC                                                            <  SRR4302535.3327189/94‑1 (MQ=60)
                                    TAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGC                                                          >  SRR4302535.2085893/1‑94 (MQ=60)
                                    TAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGAACGC                                                          >  SRR4302535.127403/1‑94 (MQ=60)
                                       GCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCC                                                       >  SRR4302535.1448266/1‑94 (MQ=60)
                                        CAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCA                                                      >  SRR4302535.2183037/1‑94 (MQ=60)
                                        CAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCA                                                      >  SRR4302535.4688607/1‑94 (MQ=60)
                                         AGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCAC                                                     <  SRR4302535.1896756/94‑1 (MQ=60)
                                          GTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCCCC                                                    >  SRR4302535.4127673/1‑94 (MQ=60)
                                          GTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACC                                                    <  SRR4302535.2291629/94‑1 (MQ=60)
                                           TAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCC                                                   <  SRR4302535.512791/94‑1 (MQ=60)
                                            AGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCT                                                  <  SRR4302535.4576241/94‑1 (MQ=60)
                                             GTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTA                                                 <  SRR4302535.3936817/94‑1 (MQ=60)
                                              TTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAA                                                >  SRR4302535.3748583/1‑94 (MQ=60)
                                               TTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAAC                                               <  SRR4302535.1167627/94‑1 (MQ=60)
                                               TTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAAC                                               <  SRR4302535.653559/94‑1 (MQ=60)
                                               TTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAAC                                               <  SRR4302535.1138167/94‑1 (MQ=60)
                                                TTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACA                                              <  SRR4302535.2518802/94‑1 (MQ=60)
                                                 TAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACAC                                             <  SRR4302535.4407019/94‑1 (MQ=60)
                                                  AATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCCAACACG                                            >  SRR4302535.2684356/1‑94 (MQ=60)
                                                   ATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGG                                           >  SRR4302535.407527/1‑94 (MQ=60)
                                                   ATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGG                                           <  SRR4302535.2476203/94‑1 (MQ=60)
                                                    TCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGT                                          <  SRR4302535.3207749/94‑1 (MQ=60)
                                                     CAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTG                                         >  SRR4302535.1579169/1‑94 (MQ=60)
                                                     CAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTG                                         <  SRR4302535.1197855/94‑1 (MQ=60)
                                                     CAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGACACCCTAACACGGAG                                         >  SRR4302535.1248233/1‑94 (MQ=60)
                                                       GGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGC                                       >  SRR4302535.3027861/1‑94 (MQ=60)
                                                       GGTTGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGC                                       >  SRR4302535.595299/1‑94 (MQ=60)
                                                          TGTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCA                                    >  SRR4302535.730277/1‑94 (MQ=60)
                                                           GTATGACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCAT                                   >  SRR4302535.3146694/1‑94 (MQ=60)
                                                               GACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTA                               >  SRR4302535.1575150/1‑94 (MQ=60)
                                                               GACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTA                               >  SRR4302535.4572347/1‑94 (MQ=60)
                                                               GACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTA                               >  SRR4302535.3488752/1‑94 (MQ=60)
                                                                ACGTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAAGATAAAGAAAAGCAGGGCACGCGCCACCTTAACACGGTGGCGCATTTTAT                              <  SRR4302535.2260396/94‑1 (MQ=60)
                                                                ACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTAT                              <  SRR4302535.2472169/94‑1 (MQ=60)
                                                                ACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTAT                              >  SRR4302535.1875074/1‑94 (MQ=60)
                                                                ACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGGGGCGCATTTTAT                              >  SRR4302535.935869/1‑94 (MQ=60)
                                                                ACCTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCCAACACGGTGGCGCCTTTTAT                              >  SRR4302535.2585612/1‑94 (MQ=60)
                                                                  CTGATGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGG                            >  SRR4302535.3855863/1‑94 (MQ=60)
                                                                      TGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGGCACCCTAACACGGTGGCGCATTTTATGGACAT                        >  SRR4302535.1886630/1‑94 (MQ=60)
                                                                      TGGTGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACAT                        <  SRR4302535.1056818/94‑1 (MQ=60)
                                                                         TGACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCC                     <  SRR4302535.3161557/94‑1 (MQ=60)
                                                                          GACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCG                    <  SRR4302535.2365484/94‑1 (MQ=60)
                                                                          GACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCG                    <  SRR4302535.3305497/94‑1 (MQ=60)
                                                                           ACATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGA                   >  SRR4302535.3124649/1‑94 (MQ=60)
                                                                            CATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGACACCCTAACACGGTGGCGCATTTTATGGACATCCCGAA                  >  SRR4302535.3826313/1‑94 (MQ=60)
                                                                             ATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTCACACGGTGGggcgtttttttggcatcccgaaa                 >  SRR4302535.3429181/1‑71 (MQ=60)
                                                                             ATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAAT                 <  SRR4302535.4693432/94‑1 (MQ=60)
                                                                             ATAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAAT                 >  SRR4302535.3516909/1‑94 (MQ=60)
                                                                              TAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATA                <  SRR4302535.182508/94‑1 (MQ=60)
                                                                              TAAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGCGCACGCGCCTCCCTAACACGGTGTCGCATTTTATGGACATCCCGAATA                <  SRR4302535.3613058/94‑1 (MQ=60)
                                                                               AAATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATAT               <  SRR4302535.3837991/94‑1 (MQ=60)
                                                                                 ATACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGC             >  SRR4302535.3883390/1‑94 (MQ=60)
                                                                                   ACGTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCAA           <  SRR4302535.1964204/94‑1 (MQ=60)
                                                                                     GTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGGCACCCcacaccggtggggccatttttggacatcccgcaaagtaaaaa         >  SRR4302535.855711/1‑52 (MQ=60)
                                                                                     GTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCccccccacaccgtggggcgattttttggcatccccaatatgaaaaa         >  SRR4302535.3257786/1‑48 (MQ=60)
                                                                                     GTCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCcaaaaccggggggcaatttattggcatccccaaaattcaaaa         >  SRR4302535.140640/1‑52 (MQ=60)
                                                                                      TCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCAAAAC        <  SRR4302535.1885363/94‑1 (MQ=60)
                                                                                      TCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCAAAAC        <  SRR4302535.198574/94‑1 (MQ=60)
                                                                                      TCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCAAAAC        <  SRR4302535.703410/94‑1 (MQ=60)
                                                                                      TCATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCAAAAC        <  SRR4302535.3414931/94‑1 (MQ=60)
                                                                                      ACATCGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGTGCCACCCTAACACGGGGGGGCATTTTATGGACATCCCGAACATGCAAAGC        >  SRR4302535.1282687/1‑94 (MQ=60)
                                                                                       CATCTATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCAAAACG       <  SRR4302535.44497/94‑1 (MQ=60)
                                                                                          CGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCAAAACGCAG    <  SRR4302535.2203717/94‑1 (MQ=60)
                                                                                          CGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACAGCGGCGCAATTTATGGACCTCCCGAATATGCAAAAAGCAG    >  SRR4302535.3744296/1‑94 (MQ=60)
                                                                                          CGATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACACCGCACCCTAACACTGCGGGGCGTTTTATTGACATCCCGAATATGCACAACGCAG    >  SRR4302535.2730475/1‑94 (MQ=44)
                                                                                           GATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCccccccccaacacgggggcgtttttttttaacacccacaacaaaaaaaaaag   >  SRR4302535.3271179/1‑42 (MQ=60)
                                                                                           GATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCAAAACGCAGG   <  SRR4302535.4638585/94‑1 (MQ=60)
                                                                                           GATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCAAAACGCAGG   <  SRR4302535.4349270/94‑1 (MQ=60)
                                                                                            ATAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGGCACCCTAACACGGTGGGGCATTTTATTGAGATCCCGAATATGCAAAAAGCAGGG  >  SRR4302535.87072/1‑94 (MQ=60)
                                                                                             |                                                                                            
TCAGGCTAAGTATCCGGTTGATCTGAAACTGGTTGTTAAGCAGTAGTTTTAATCAGGTTGTATGACCTGATGGTGACATAAATACGTCATCGACAGATGAACGTGTAATATAAAGAAAAGCAGGGCACGCGCCACCCTAACACGGTGGCGCATTTTATGGACATCCCGAATATGCAAAACGCAGGC  >  NC_000913/3934749‑3934934

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑